Wall clock time and date at job start Tue Mar 31 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47070 * 299.99805 * 3 2 1 6 6 H 1.48493 * 109.47287 * 60.00064 * 3 2 1 7 7 C 1.38815 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00334 * 192.43629 * 7 2 1 9 9 N 1.36944 * 119.99710 * 12.43859 * 7 2 1 10 10 C 1.47161 * 120.71319 * 26.60947 * 9 7 2 11 11 C 1.53882 * 108.03618 * 132.73152 * 10 9 7 12 12 H 1.09000 * 112.58023 * 182.22064 * 11 10 9 13 13 C 1.54545 * 107.82952 * 306.50532 * 11 10 9 14 14 C 1.54283 * 104.94720 * 89.01119 * 13 11 10 15 15 C 1.54795 * 104.72783 * 0.08278 * 14 13 11 16 16 H 1.09000 * 112.69037 * 146.63489 * 15 14 13 17 17 C 1.47171 * 120.70675 * 206.58584 * 9 7 2 18 18 N 1.48311 * 107.20478 * 58.35783 * 11 10 9 19 19 C 1.34776 * 128.07354 * 106.70983 * 18 11 10 20 20 O 1.21703 * 119.99887 * 173.57792 * 19 18 11 21 21 C 1.46580 * 120.00312 * 353.57726 * 19 18 11 22 22 C 1.36645 * 125.46120 * 173.14719 * 21 19 18 23 23 C 1.37470 * 113.29888 * 179.83879 * 22 21 19 24 24 C 1.33814 * 115.10019 * 0.44918 * 23 22 21 25 25 S 1.70619 * 110.95444 * 359.75399 * 24 23 22 26 26 H 0.96997 * 119.99749 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.74646 * 13.09554 * 10 9 7 28 28 H 1.09001 * 109.75085 * 252.37352 * 10 9 7 29 29 H 1.09007 * 110.36558 * 207.90358 * 13 11 10 30 30 H 1.09002 * 110.36603 * 330.10702 * 13 11 10 31 31 H 1.08996 * 110.36353 * 118.89757 * 14 13 11 32 32 H 1.09001 * 110.35886 * 241.21386 * 14 13 11 33 33 H 1.08998 * 109.74422 * 107.63568 * 17 9 7 34 34 H 1.08996 * 109.78842 * 346.92491 * 17 9 7 35 35 H 1.07996 * 123.35181 * 0.02562 * 22 21 19 36 36 H 1.08000 * 122.45121 * 180.23196 * 23 22 21 37 37 H 1.07998 * 124.52408 * 179.72730 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0711 -1.2131 0.2019 9 7 1.3495 -2.3743 -0.2544 10 6 0.1245 -2.3846 -1.0698 11 6 0.2530 -3.5127 -2.1084 12 1 -0.6033 -3.5619 -2.7810 13 6 1.5818 -3.3058 -2.8699 14 6 2.6358 -4.0758 -2.0474 15 6 1.8450 -4.6809 -0.8622 16 1 2.2369 -5.6473 -0.5449 17 6 1.8498 -3.6507 0.2808 18 7 0.4512 -4.7777 -1.3599 19 6 -0.4296 -5.7809 -1.1752 20 8 -0.0745 -6.8100 -0.6312 21 6 -1.8153 -5.6325 -1.6295 22 6 -2.7623 -6.6176 -1.6206 23 6 -3.9823 -6.2034 -2.1001 24 6 -4.0322 -4.9266 -2.4975 25 16 -2.5233 -4.1605 -2.2803 26 1 -0.4849 0.8400 -0.0004 27 1 0.0124 -1.4269 -1.5782 28 1 -0.7407 -2.5674 -0.4325 29 1 1.5106 -3.7185 -3.8763 30 1 1.8338 -2.2462 -2.9122 31 1 3.0828 -4.8670 -2.6493 32 1 3.4049 -3.3944 -1.6836 33 1 1.2002 -3.9918 1.0869 34 1 2.8650 -3.5211 0.6557 35 1 -2.5721 -7.6208 -1.2689 36 1 -4.8369 -6.8614 -2.1555 37 1 -4.9104 -4.4454 -2.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017312088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:39 Heat of formation + Delta-G solvation = 42.565570 kcal Electronic energy + Delta-G solvation = -22013.634304 eV Core-core repulsion = 18883.817990 eV Total energy + Delta-G solvation = -3129.816313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17408 -38.25103 -36.87299 -34.14698 -31.79156 -30.88054 -30.50089 -29.26398 -26.39378 -24.82862 -23.71612 -22.99109 -21.46798 -20.43663 -18.98836 -18.79769 -17.90329 -16.35143 -15.91337 -15.54977 -15.14689 -14.71883 -14.50164 -14.15428 -13.47122 -13.21013 -13.07934 -12.87105 -12.62660 -12.53746 -12.31885 -11.98896 -11.89466 -11.61405 -11.22990 -10.91754 -10.84481 -10.54804 -10.35835 -10.34067 -9.99409 -9.83820 -9.72695 -9.63748 -8.76942 -8.63842 -8.37986 -8.23071 -6.76061 -5.86916 -3.31119 0.71082 1.68969 2.12246 2.56359 3.29420 3.31907 3.39981 3.41203 3.53419 4.40404 4.77777 5.03040 5.08147 5.27881 5.31441 5.35164 5.43567 5.54749 5.58504 5.71226 5.78908 5.97596 6.07367 6.10537 6.22628 6.28868 6.36237 6.37608 6.45157 6.50756 6.70372 6.79504 6.91554 7.15043 7.44555 7.68739 8.00910 8.30408 8.48391 9.09768 9.71156 10.28302 11.21246 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.005978 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.290455 B = 4682.662818 C = 5477.724571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.173 3.827 11 C 0.089 3.911 12 H 0.084 0.916 13 C -0.110 4.110 14 C -0.111 4.111 15 C 0.117 3.883 16 H 0.093 0.907 17 C 0.136 3.864 18 N -0.604 5.604 19 C 0.605 3.395 20 O -0.550 6.550 21 C -0.257 4.257 22 C -0.068 4.068 23 C -0.154 4.154 24 C -0.264 4.264 25 S 0.246 5.754 26 H 0.255 0.745 27 H 0.100 0.900 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 -7.559 -7.569 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.017 4.017 12 H 0.101 0.899 13 C -0.148 4.148 14 C -0.149 4.149 15 C 0.013 3.987 16 H 0.111 0.889 17 C 0.009 3.991 18 N -0.336 5.336 19 C 0.393 3.607 20 O -0.431 6.431 21 C -0.378 4.378 22 C -0.102 4.102 23 C -0.185 4.185 24 C -0.401 4.401 25 S 0.515 5.485 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.343 -6.530 -7.530 10.513 hybrid contribution -0.557 -0.534 0.308 0.830 sum -3.900 -7.064 -7.222 10.829 Atomic orbital electron populations 1.69975 1.05173 1.25494 1.54497 1.25064 0.95420 0.98328 1.00771 0.86178 0.79228 0.83798 0.77300 1.20267 1.21558 1.21733 1.19240 0.91430 0.83730 1.43461 0.91230 1.44053 1.28327 1.01951 1.56713 1.21378 0.88594 0.95119 0.90277 1.23702 0.97454 0.85437 0.95113 0.89874 1.22307 0.93675 1.02157 0.96682 1.22344 0.97976 0.98791 0.95810 1.22991 0.80291 0.99339 0.96070 0.88937 1.21491 0.98444 0.86681 0.92504 1.49077 1.14021 1.18290 1.52239 1.16497 0.82805 0.82256 0.79099 1.90768 1.78781 1.27936 1.45589 1.24698 0.98986 0.99264 1.14851 1.20687 0.91293 0.99914 0.98298 1.19926 0.98562 0.95950 1.04044 1.25806 1.05614 1.00400 1.08305 1.83893 0.98698 1.10830 1.55104 0.93516 0.88205 0.95452 0.92876 0.89177 0.92695 0.89694 0.96050 0.91580 0.83393 0.84509 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.63 10.94 55.49 0.61 -24.03 16 2 C 0.00 0.06 5.04 -17.43 -0.09 -0.02 16 3 Si 0.90 20.52 29.57 -169.99 -5.03 15.49 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.30 9.66 -15.05 -0.15 -6.44 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 N -0.59 -13.64 2.29 -171.08 -0.39 -14.03 16 10 C 0.17 3.81 4.48 -3.22 -0.01 3.80 16 11 C 0.09 1.60 3.19 -65.66 -0.21 1.39 16 12 H 0.08 1.37 4.62 -28.04 -0.13 1.24 16 13 C -0.11 -1.82 6.18 -25.25 -0.16 -1.97 16 14 C -0.11 -1.79 6.20 -25.11 -0.16 -1.95 16 15 C 0.12 2.13 4.14 -65.53 -0.27 1.86 16 16 H 0.09 1.64 7.90 -51.93 -0.41 1.22 16 17 C 0.14 2.81 6.02 -3.21 -0.02 2.79 16 18 N -0.60 -11.43 2.75 -154.44 -0.42 -11.85 16 19 C 0.60 11.85 7.87 -12.90 -0.10 11.75 16 20 O -0.55 -12.02 17.15 5.19 0.09 -11.93 16 21 C -0.26 -4.35 6.37 -36.79 -0.23 -4.58 16 22 C -0.07 -1.01 10.02 -40.44 -0.41 -1.41 16 23 C -0.15 -1.90 10.15 -41.41 -0.42 -2.32 16 24 C -0.26 -3.24 10.92 29.18 0.32 -2.92 16 25 S 0.25 3.59 18.74 -107.50 -2.01 1.57 16 26 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.10 2.40 6.21 -51.92 -0.32 2.08 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.60 7.84 -51.93 -0.41 1.20 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.41 7.84 -51.93 -0.41 1.00 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 1.28 7.96 -51.93 -0.41 0.86 16 35 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -29.47 308.26 -9.01 -38.48 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.60 Total: 1.69 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.90 Total: -0.04 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.21 Total: -49.91 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -2.01 Total: 1.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.47 -9.01 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017312088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.048 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds