Wall clock time and date at job start Tue Mar 31 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47070 * 299.99805 * 3 2 1 6 6 H 1.48493 * 109.47287 * 60.00064 * 3 2 1 7 7 C 1.38815 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00334 * 192.43629 * 7 2 1 9 9 N 1.36944 * 119.99710 * 12.43859 * 7 2 1 10 10 C 1.47161 * 120.71319 * 26.60947 * 9 7 2 11 11 C 1.53882 * 108.03618 * 132.73152 * 10 9 7 12 12 H 1.09000 * 112.58023 * 182.22064 * 11 10 9 13 13 C 1.54545 * 107.82952 * 306.50532 * 11 10 9 14 14 C 1.54283 * 104.94720 * 89.01119 * 13 11 10 15 15 C 1.54795 * 104.72783 * 0.08278 * 14 13 11 16 16 H 1.09000 * 112.69037 * 146.63489 * 15 14 13 17 17 C 1.47171 * 120.70675 * 206.58584 * 9 7 2 18 18 N 1.48311 * 107.20478 * 58.35783 * 11 10 9 19 19 C 1.34776 * 128.07354 * 106.70983 * 18 11 10 20 20 O 1.21703 * 119.99887 * 173.57792 * 19 18 11 21 21 C 1.46580 * 120.00312 * 353.57726 * 19 18 11 22 22 C 1.36645 * 125.46120 * 173.14719 * 21 19 18 23 23 C 1.37470 * 113.29888 * 179.83879 * 22 21 19 24 24 C 1.33814 * 115.10019 * 0.44918 * 23 22 21 25 25 S 1.70619 * 110.95444 * 359.75399 * 24 23 22 26 26 H 0.96997 * 119.99749 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.74646 * 13.09554 * 10 9 7 28 28 H 1.09001 * 109.75085 * 252.37352 * 10 9 7 29 29 H 1.09007 * 110.36558 * 207.90358 * 13 11 10 30 30 H 1.09002 * 110.36603 * 330.10702 * 13 11 10 31 31 H 1.08996 * 110.36353 * 118.89757 * 14 13 11 32 32 H 1.09001 * 110.35886 * 241.21386 * 14 13 11 33 33 H 1.08998 * 109.74422 * 107.63568 * 17 9 7 34 34 H 1.08996 * 109.78842 * 346.92491 * 17 9 7 35 35 H 1.07996 * 123.35181 * 0.02562 * 22 21 19 36 36 H 1.08000 * 122.45121 * 180.23196 * 23 22 21 37 37 H 1.07998 * 124.52408 * 179.72730 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0711 -1.2131 0.2019 9 7 1.3495 -2.3743 -0.2544 10 6 0.1245 -2.3846 -1.0698 11 6 0.2530 -3.5127 -2.1084 12 1 -0.6033 -3.5619 -2.7810 13 6 1.5818 -3.3058 -2.8699 14 6 2.6358 -4.0758 -2.0474 15 6 1.8450 -4.6809 -0.8622 16 1 2.2369 -5.6473 -0.5449 17 6 1.8498 -3.6507 0.2808 18 7 0.4512 -4.7777 -1.3599 19 6 -0.4296 -5.7809 -1.1752 20 8 -0.0745 -6.8100 -0.6312 21 6 -1.8153 -5.6325 -1.6295 22 6 -2.7623 -6.6176 -1.6206 23 6 -3.9823 -6.2034 -2.1001 24 6 -4.0322 -4.9266 -2.4975 25 16 -2.5233 -4.1605 -2.2803 26 1 -0.4849 0.8400 -0.0004 27 1 0.0124 -1.4269 -1.5782 28 1 -0.7407 -2.5674 -0.4325 29 1 1.5106 -3.7185 -3.8763 30 1 1.8338 -2.2462 -2.9122 31 1 3.0828 -4.8670 -2.6493 32 1 3.4049 -3.3944 -1.6836 33 1 1.2002 -3.9918 1.0869 34 1 2.8650 -3.5211 0.6557 35 1 -2.5721 -7.6208 -1.2689 36 1 -4.8369 -6.8614 -2.1555 37 1 -4.9104 -4.4454 -2.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017312088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:39 Heat of formation + Delta-G solvation = 26.053494 kcal Electronic energy + Delta-G solvation = -22014.350321 eV Core-core repulsion = 18883.817990 eV Total energy + Delta-G solvation = -3130.532331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68358 -39.63855 -38.13933 -35.94917 -33.40483 -32.44282 -32.18504 -30.45964 -28.14504 -26.13499 -25.29637 -24.59010 -22.92878 -21.87051 -20.41351 -19.97485 -19.51122 -18.01491 -17.42539 -16.79649 -16.67710 -16.38706 -16.01928 -15.49520 -15.25705 -14.80470 -14.55151 -14.36080 -13.86123 -13.70790 -13.69600 -13.50751 -13.25045 -13.18166 -12.80541 -12.72485 -12.31727 -12.18360 -12.07732 -11.97378 -11.65968 -11.26752 -11.17024 -11.16280 -10.58815 -10.05533 -9.71517 -9.50551 -8.65774 -7.83327 -5.30847 -0.45501 0.52960 1.02930 1.43488 1.50640 1.53736 1.62553 1.87274 2.15473 2.53269 3.32281 3.39791 3.51669 3.82026 3.89602 4.10558 4.14607 4.16403 4.33891 4.39302 4.51246 4.56429 4.59778 4.76256 4.82878 4.98381 5.04409 5.06019 5.11399 5.21193 5.29353 5.36524 5.41632 5.55268 5.59992 5.68861 6.36533 6.52659 6.99215 7.14632 7.80634 8.35485 9.22822 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.005978 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.290455 B = 4682.662818 C = 5477.724571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.046 4.046 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.300 1.300 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.599 5.599 10 C 0.187 3.813 11 C 0.098 3.902 12 H 0.103 0.897 13 C -0.107 4.107 14 C -0.101 4.101 15 C 0.118 3.882 16 H 0.099 0.901 17 C 0.136 3.864 18 N -0.608 5.608 19 C 0.599 3.401 20 O -0.583 6.583 21 C -0.300 4.300 22 C -0.057 4.057 23 C -0.155 4.155 24 C -0.239 4.239 25 S 0.224 5.776 26 H 0.250 0.750 27 H 0.077 0.923 28 H -0.007 1.007 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.081 0.919 33 H -0.007 1.007 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -8.146 -9.260 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.227 1.227 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.322 5.322 10 C 0.060 3.940 11 C -0.008 4.008 12 H 0.120 0.880 13 C -0.145 4.145 14 C -0.140 4.140 15 C 0.014 3.986 16 H 0.117 0.883 17 C 0.009 3.991 18 N -0.339 5.339 19 C 0.390 3.610 20 O -0.467 6.467 21 C -0.420 4.420 22 C -0.092 4.092 23 C -0.185 4.185 24 C -0.376 4.376 25 S 0.492 5.508 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.011 0.989 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.011 0.989 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.191 0.809 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.769 -7.124 -9.234 12.257 hybrid contribution -0.542 -0.412 0.895 1.125 sum -4.311 -7.536 -8.339 12.038 Atomic orbital electron populations 1.70139 1.06484 1.25738 1.55990 1.25748 0.96088 1.01140 1.01193 0.85199 0.78631 0.80011 0.76526 1.19048 1.21508 1.22749 1.19544 0.91792 0.84530 1.42410 0.90801 1.44257 1.28426 1.02308 1.57219 1.21073 0.86991 0.95582 0.90322 1.23526 0.99496 0.83520 0.94220 0.87984 1.22304 0.92506 1.01626 0.98067 1.22305 0.97410 0.99285 0.94968 1.22949 0.80807 0.98800 0.96057 0.88288 1.21551 0.98199 0.86434 0.92898 1.49150 1.14197 1.18310 1.52252 1.16943 0.83849 0.81820 0.78414 1.90727 1.79660 1.29146 1.47156 1.24572 0.98291 1.01052 1.18092 1.21006 0.91755 0.99686 0.96734 1.20230 0.98581 0.96483 1.03225 1.26162 1.05046 0.99993 1.06402 1.83873 1.00788 1.10617 1.55517 0.94037 0.90473 0.98895 0.89830 0.90555 0.89942 0.90062 0.98880 0.90416 0.83003 0.80933 0.78599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.33 10.94 21.65 0.24 -52.09 16 2 C -0.05 -2.44 5.04 84.86 0.43 -2.01 16 3 Si 0.97 42.53 29.57 68.60 2.03 44.56 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 7 C -0.25 -12.91 9.66 84.03 0.81 -12.10 16 8 H 0.07 3.64 7.85 -2.91 -0.02 3.62 16 9 N -0.60 -28.42 2.29 -695.17 -1.59 -30.01 16 10 C 0.19 8.49 4.48 86.55 0.39 8.88 16 11 C 0.10 3.52 3.19 45.47 0.14 3.66 16 12 H 0.10 3.32 4.62 -17.58 -0.08 3.24 16 13 C -0.11 -3.37 6.18 31.55 0.19 -3.18 16 14 C -0.10 -3.11 6.20 31.64 0.20 -2.91 16 15 C 0.12 4.26 4.14 45.55 0.19 4.45 16 16 H 0.10 3.46 7.90 -2.39 -0.02 3.44 16 17 C 0.14 5.73 6.02 86.55 0.52 6.25 16 18 N -0.61 -23.05 2.75 -760.73 -2.09 -25.14 16 19 C 0.60 23.69 7.87 86.42 0.68 24.37 16 20 O -0.58 -25.89 17.15 -4.36 -0.07 -25.96 16 21 C -0.30 -10.01 6.37 24.07 0.15 -9.85 16 22 C -0.06 -1.59 10.02 21.72 0.22 -1.37 16 23 C -0.16 -3.33 10.15 21.08 0.21 -3.11 16 24 C -0.24 -5.08 10.92 66.81 0.73 -4.35 16 25 S 0.22 6.31 18.74 -56.49 -1.06 5.25 16 26 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 27 H 0.08 3.85 6.21 -2.38 -0.01 3.84 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.08 2.65 7.84 -2.39 -0.02 2.63 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.57 7.84 -2.39 -0.02 2.55 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.08 3.03 7.96 -2.39 -0.02 3.01 16 35 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -65.14 308.26 3.33 -61.81 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.01 Total: 12.85 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 4.87 Total: 8.72 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.44 Total: -107.24 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.07 Total: -25.96 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.06 Total: 5.25 kcal Total: -65.14 3.33 -61.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017312088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.866 kcal (2) G-P(sol) polarization free energy of solvation -65.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds