Wall clock time and date at job start Tue Mar 31 2020 06:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48504 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46816 * 299.99342 * 3 2 1 6 6 H 1.48494 * 109.47257 * 59.99145 * 3 2 1 7 7 C 1.38809 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00355 * 166.98604 * 7 2 1 9 9 N 1.36938 * 120.00238 * 346.98366 * 7 2 1 10 10 C 1.47165 * 120.71148 * 150.44893 * 9 7 2 11 11 C 1.53893 * 108.02920 * 132.74910 * 10 9 7 12 12 H 1.08996 * 112.58020 * 182.22306 * 11 10 9 13 13 C 1.54123 * 107.71283 * 306.33151 * 11 10 9 14 14 C 1.54280 * 104.89234 * 89.40714 * 13 11 10 15 15 C 1.54547 * 104.84939 * 359.80734 * 14 13 11 16 16 H 1.09004 * 112.18540 * 146.40582 * 15 14 13 17 17 C 1.49241 * 120.77123 * 330.53626 * 9 7 2 18 18 N 1.48312 * 107.20330 * 58.36743 * 11 10 9 19 19 C 1.34781 * 128.07610 * 106.70071 * 18 11 10 20 20 O 1.21643 * 119.99800 * 182.49212 * 19 18 11 21 21 C 1.47192 * 120.00041 * 2.48914 * 19 18 11 22 22 C 1.44427 * 123.45943 * 333.86242 * 21 19 18 23 23 C 1.32764 * 113.08057 * 180.30462 * 22 21 19 24 24 S 1.75502 * 110.57794 * 359.74592 * 23 22 21 25 25 C 1.36004 * 123.46097 * 153.68522 * 21 19 18 26 26 H 0.96998 * 120.00093 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.74996 * 13.12393 * 10 9 7 28 28 H 1.08994 * 109.79593 * 252.41058 * 10 9 7 29 29 H 1.08997 * 110.51100 * 330.46962 * 13 11 10 30 30 H 1.08996 * 110.27886 * 208.22577 * 13 11 10 31 31 H 1.08998 * 110.36815 * 240.96611 * 14 13 11 32 32 H 1.09000 * 110.45993 * 118.69392 * 14 13 11 33 33 H 1.08996 * 110.52173 * 107.81838 * 17 9 7 34 34 H 1.09003 * 109.74559 * 346.59580 * 17 9 7 35 35 H 1.08003 * 123.46017 * 0.03085 * 22 21 19 36 36 H 1.08001 * 124.71389 * 179.74558 * 23 22 21 37 37 H 1.07996 * 124.59062 * 359.97247 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0694 -1.2143 -0.2101 9 7 1.3519 -2.3727 0.2682 10 6 1.8099 -3.6432 -0.3166 11 6 1.8545 -4.6953 0.8056 12 1 2.2233 -5.6609 0.4595 13 6 2.7126 -4.1232 1.9509 14 6 1.7168 -3.3615 2.8500 15 6 0.3449 -3.5394 2.1610 16 1 -0.4724 -3.5968 2.8799 17 6 0.1534 -2.3887 1.1574 18 7 0.4879 -4.7885 1.3742 19 6 -0.4119 -5.7796 1.2172 20 8 -1.5163 -5.6833 1.7180 21 6 -0.0583 -6.9784 0.4399 22 6 0.9371 -6.9839 -0.6067 23 6 1.0867 -8.1736 -1.1765 24 16 0.0094 -9.3488 -0.4427 25 6 -0.6327 -8.1955 0.6356 26 1 -0.4850 0.8400 -0.0004 27 1 2.8056 -3.5154 -0.7414 28 1 1.1161 -3.9630 -1.0940 29 1 3.4675 -3.4417 1.5588 30 1 3.1855 -4.9315 2.5087 31 1 1.9820 -2.3054 2.8999 32 1 1.6979 -3.7948 3.8500 33 1 -0.7525 -2.5551 0.5746 34 1 0.0793 -1.4419 1.6924 35 1 1.4987 -6.1088 -0.8989 36 1 1.7756 -8.3885 -1.9800 37 1 -1.3956 -8.4022 1.3716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017333125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:29 Heat of formation + Delta-G solvation = 45.646140 kcal Electronic energy + Delta-G solvation = -21955.258595 eV Core-core repulsion = 18825.575865 eV Total energy + Delta-G solvation = -3129.682730 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28110 -38.09020 -36.56124 -34.00753 -31.24020 -31.10202 -30.33841 -29.73427 -26.35530 -24.91732 -23.66326 -23.03482 -21.18386 -20.09817 -19.82280 -18.45822 -17.79117 -16.57190 -15.85573 -15.62533 -15.13187 -14.58334 -14.37443 -13.99421 -13.45701 -13.14872 -13.07429 -12.88326 -12.71926 -12.69520 -12.25854 -11.99828 -11.83965 -11.48813 -11.16852 -11.05267 -10.88030 -10.51453 -10.44167 -10.32964 -9.98099 -9.86410 -9.69040 -9.49239 -9.04900 -8.58938 -8.47171 -8.15592 -6.68964 -5.82891 -3.29245 0.85533 1.51938 1.85658 2.12480 3.33437 3.41117 3.43030 3.46605 3.56038 4.42890 4.72778 4.90824 5.06721 5.19810 5.34842 5.35500 5.42036 5.45319 5.53975 5.73562 5.77919 5.87892 6.04134 6.10054 6.19084 6.24304 6.35073 6.38965 6.43507 6.57812 6.63436 6.75251 6.95163 7.26566 7.53003 7.72859 8.10549 8.33784 8.58715 9.09977 9.73684 10.34047 11.25683 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.004597 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.106070 B = 6089.800692 C = 6286.086745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.136 3.864 11 C 0.095 3.905 12 H 0.096 0.904 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.106 3.894 16 H 0.087 0.913 17 C 0.174 3.826 18 N -0.596 5.596 19 C 0.590 3.410 20 O -0.553 6.553 21 C -0.144 4.144 22 C -0.115 4.115 23 C -0.233 4.233 24 S 0.162 5.838 25 C -0.189 4.189 26 H 0.255 0.745 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.089 0.911 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 -15.882 0.937 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.009 3.991 11 C -0.010 4.010 12 H 0.114 0.886 13 C -0.150 4.150 14 C -0.150 4.150 15 C 0.002 3.998 16 H 0.105 0.895 17 C 0.049 3.951 18 N -0.328 5.328 19 C 0.378 3.622 20 O -0.434 6.434 21 C -0.161 4.161 22 C -0.144 4.144 23 C -0.368 4.368 24 S 0.426 5.574 25 C -0.327 4.327 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.660 -17.263 0.920 17.670 hybrid contribution 0.558 2.480 0.122 2.545 sum 4.218 -14.783 1.043 15.408 Atomic orbital electron populations 1.70005 1.05279 1.25539 1.53821 1.25131 0.95309 0.98395 1.00472 0.86227 0.79249 0.83980 0.77307 1.20234 1.21730 1.21564 1.19166 0.91277 0.83906 1.43958 0.91488 1.44499 1.32185 1.02126 1.52374 1.21475 0.98340 0.87218 0.92070 1.23302 0.81898 0.99409 0.96407 0.88592 1.22234 0.97921 0.98885 0.95919 1.22309 0.94168 1.01872 0.96654 1.23238 0.97532 0.84522 0.94476 0.89485 1.21608 0.88853 0.94673 0.89976 1.49040 1.15138 1.19412 1.49164 1.17137 0.83683 0.81230 0.80160 1.90766 1.21187 1.80188 1.51212 1.20341 1.00549 0.94456 1.00730 1.21789 0.97861 0.98933 0.95778 1.25484 1.06994 0.97003 1.07279 1.82903 1.33426 1.12595 1.28465 1.25444 1.05090 0.96967 1.05245 0.93531 0.91780 0.96325 0.89860 0.92940 0.89478 0.93080 0.95203 0.89299 0.82072 0.81423 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.21 55.49 0.62 -25.07 16 2 C 0.01 0.16 5.02 -17.43 -0.09 0.08 16 3 Si 0.90 20.95 29.57 -169.99 -5.03 15.92 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.51 9.63 -15.06 -0.14 -6.65 16 8 H 0.07 1.67 7.86 -52.48 -0.41 1.26 16 9 N -0.59 -13.81 2.30 -169.36 -0.39 -14.20 16 10 C 0.14 2.64 5.52 -3.21 -0.02 2.63 16 11 C 0.09 1.55 3.06 -65.88 -0.20 1.35 16 12 H 0.10 1.33 4.99 -51.93 -0.26 1.07 16 13 C -0.11 -1.75 6.16 -25.47 -0.16 -1.90 16 14 C -0.11 -1.93 6.19 -25.25 -0.16 -2.08 16 15 C 0.11 2.11 4.06 -65.66 -0.27 1.84 16 16 H 0.09 1.74 7.95 -51.93 -0.41 1.33 16 17 C 0.17 4.14 4.70 -2.06 -0.01 4.13 16 18 N -0.60 -11.20 2.74 -154.60 -0.42 -11.62 16 19 C 0.59 11.46 7.79 -12.62 -0.10 11.36 16 20 O -0.55 -12.48 17.21 5.24 0.09 -12.39 16 21 C -0.14 -2.25 5.80 -104.63 -0.61 -2.86 16 22 C -0.11 -1.51 8.44 -39.02 -0.33 -1.84 16 23 C -0.23 -2.46 11.12 28.86 0.32 -2.14 16 24 S 0.16 1.61 23.02 -107.50 -2.48 -0.86 16 25 C -0.19 -2.52 10.61 29.93 0.32 -2.21 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.06 1.15 7.97 -51.92 -0.41 0.74 16 28 H 0.02 0.39 7.73 -51.93 -0.40 -0.01 16 29 H 0.08 1.36 7.83 -51.93 -0.41 0.95 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.63 7.86 -51.93 -0.41 1.22 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 2.29 6.53 -51.93 -0.34 1.95 16 35 H 0.16 2.11 4.75 -52.48 -0.25 1.86 16 36 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 307.79 15.07 4.64 4.64 Total: -1.00 -30.89 307.79 -8.95 -39.84 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.55 Total: 2.05 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.44 Total: 1.70 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.19 Total: -50.89 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.48 Total: -0.86 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.89 -8.95 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017333125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.485 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds