Wall clock time and date at job start Tue Mar 31 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48504 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46816 * 299.99342 * 3 2 1 6 6 H 1.48494 * 109.47257 * 59.99145 * 3 2 1 7 7 C 1.38809 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00355 * 166.98604 * 7 2 1 9 9 N 1.36938 * 120.00238 * 346.98366 * 7 2 1 10 10 C 1.47165 * 120.71148 * 150.44893 * 9 7 2 11 11 C 1.53893 * 108.02920 * 132.74910 * 10 9 7 12 12 H 1.08996 * 112.58020 * 182.22306 * 11 10 9 13 13 C 1.54123 * 107.71283 * 306.33151 * 11 10 9 14 14 C 1.54280 * 104.89234 * 89.40714 * 13 11 10 15 15 C 1.54547 * 104.84939 * 359.80734 * 14 13 11 16 16 H 1.09004 * 112.18540 * 146.40582 * 15 14 13 17 17 C 1.49241 * 120.77123 * 330.53626 * 9 7 2 18 18 N 1.48312 * 107.20330 * 58.36743 * 11 10 9 19 19 C 1.34781 * 128.07610 * 106.70071 * 18 11 10 20 20 O 1.21643 * 119.99800 * 182.49212 * 19 18 11 21 21 C 1.47192 * 120.00041 * 2.48914 * 19 18 11 22 22 C 1.44427 * 123.45943 * 333.86242 * 21 19 18 23 23 C 1.32764 * 113.08057 * 180.30462 * 22 21 19 24 24 S 1.75502 * 110.57794 * 359.74592 * 23 22 21 25 25 C 1.36004 * 123.46097 * 153.68522 * 21 19 18 26 26 H 0.96998 * 120.00093 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.74996 * 13.12393 * 10 9 7 28 28 H 1.08994 * 109.79593 * 252.41058 * 10 9 7 29 29 H 1.08997 * 110.51100 * 330.46962 * 13 11 10 30 30 H 1.08996 * 110.27886 * 208.22577 * 13 11 10 31 31 H 1.08998 * 110.36815 * 240.96611 * 14 13 11 32 32 H 1.09000 * 110.45993 * 118.69392 * 14 13 11 33 33 H 1.08996 * 110.52173 * 107.81838 * 17 9 7 34 34 H 1.09003 * 109.74559 * 346.59580 * 17 9 7 35 35 H 1.08003 * 123.46017 * 0.03085 * 22 21 19 36 36 H 1.08001 * 124.71389 * 179.74558 * 23 22 21 37 37 H 1.07996 * 124.59062 * 359.97247 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0694 -1.2143 -0.2101 9 7 1.3519 -2.3727 0.2682 10 6 1.8099 -3.6432 -0.3166 11 6 1.8545 -4.6953 0.8056 12 1 2.2233 -5.6609 0.4595 13 6 2.7126 -4.1232 1.9509 14 6 1.7168 -3.3615 2.8500 15 6 0.3449 -3.5394 2.1610 16 1 -0.4724 -3.5968 2.8799 17 6 0.1534 -2.3887 1.1574 18 7 0.4879 -4.7885 1.3742 19 6 -0.4119 -5.7796 1.2172 20 8 -1.5163 -5.6833 1.7180 21 6 -0.0583 -6.9784 0.4399 22 6 0.9371 -6.9839 -0.6067 23 6 1.0867 -8.1736 -1.1765 24 16 0.0094 -9.3488 -0.4427 25 6 -0.6327 -8.1955 0.6356 26 1 -0.4850 0.8400 -0.0004 27 1 2.8056 -3.5154 -0.7414 28 1 1.1161 -3.9630 -1.0940 29 1 3.4675 -3.4417 1.5588 30 1 3.1855 -4.9315 2.5087 31 1 1.9820 -2.3054 2.8999 32 1 1.6979 -3.7948 3.8500 33 1 -0.7525 -2.5551 0.5746 34 1 0.0793 -1.4419 1.6924 35 1 1.4987 -6.1088 -0.8989 36 1 1.7756 -8.3885 -1.9800 37 1 -1.3956 -8.4022 1.3716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017333125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:28 Heat of formation + Delta-G solvation = 27.005652 kcal Electronic energy + Delta-G solvation = -21956.066907 eV Core-core repulsion = 18825.575865 eV Total energy + Delta-G solvation = -3130.491042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75477 -39.51771 -37.76199 -35.86162 -33.02542 -32.59438 -32.00801 -30.72001 -28.14400 -26.22641 -25.28019 -24.62403 -22.62069 -21.46675 -21.12738 -19.88411 -19.06860 -18.14643 -17.37142 -16.91463 -16.76476 -16.28516 -15.83695 -15.30819 -15.27083 -14.62621 -14.49024 -14.31871 -13.87261 -13.77636 -13.73930 -13.45348 -13.19413 -13.15205 -12.84399 -12.73017 -12.25985 -12.17676 -12.06400 -11.92080 -11.69179 -11.48006 -11.16894 -11.00669 -10.61264 -10.03520 -9.80343 -9.30953 -8.64110 -7.85191 -5.34700 -0.15825 0.63533 0.93235 1.04574 1.48272 1.50452 1.60315 2.04370 2.19786 2.51752 3.31520 3.44426 3.58749 3.82295 3.87284 3.99265 4.11647 4.18862 4.35231 4.41698 4.50295 4.56204 4.62710 4.80444 4.85015 4.96407 5.03015 5.07687 5.10990 5.14856 5.24254 5.27380 5.37707 5.52956 5.58964 5.67724 6.34911 6.65134 7.08158 7.10146 7.77817 8.36934 9.22043 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.004597 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.106070 B = 6089.800692 C = 6286.086745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.299 1.299 6 H -0.295 1.295 7 C -0.249 4.249 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.133 3.867 11 C 0.105 3.895 12 H 0.134 0.866 13 C -0.105 4.105 14 C -0.104 4.104 15 C 0.107 3.893 16 H 0.076 0.924 17 C 0.189 3.811 18 N -0.599 5.599 19 C 0.582 3.418 20 O -0.601 6.601 21 C -0.176 4.176 22 C -0.136 4.136 23 C -0.220 4.220 24 S 0.249 5.751 25 C -0.204 4.204 26 H 0.247 0.753 27 H 0.085 0.915 28 H 0.003 0.997 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.075 0.925 33 H -0.020 1.020 34 H 0.059 0.941 35 H 0.159 0.841 36 H 0.204 0.796 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -18.801 0.284 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.226 1.226 6 H -0.222 1.222 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.323 5.323 10 C 0.006 3.994 11 C 0.002 3.998 12 H 0.151 0.849 13 C -0.143 4.143 14 C -0.142 4.142 15 C 0.003 3.997 16 H 0.094 0.906 17 C 0.063 3.937 18 N -0.330 5.330 19 C 0.372 3.628 20 O -0.484 6.484 21 C -0.194 4.194 22 C -0.164 4.164 23 C -0.355 4.355 24 S 0.514 5.486 25 C -0.342 4.342 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.021 0.979 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.094 0.906 33 H -0.002 1.002 34 H 0.078 0.922 35 H 0.176 0.824 36 H 0.220 0.780 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.714 -20.223 0.251 21.310 hybrid contribution -0.438 3.215 0.241 3.253 sum 6.276 -17.009 0.492 18.136 Atomic orbital electron populations 1.70199 1.07051 1.25639 1.56234 1.25901 0.95883 1.01700 1.01221 0.85195 0.78987 0.79876 0.76310 1.18163 1.22630 1.22212 1.19589 0.91918 0.84621 1.41800 0.90135 1.44684 1.31562 1.03279 1.52806 1.21673 0.98675 0.86143 0.92867 1.23351 0.80856 1.00114 0.95480 0.84889 1.22254 0.97129 0.99609 0.95311 1.22230 0.92530 1.01388 0.98068 1.22979 0.99207 0.83985 0.93547 0.90613 1.21203 0.87457 0.94986 0.90056 1.49127 1.16142 1.18706 1.48982 1.17882 0.82936 0.82285 0.79731 1.90720 1.23049 1.81363 1.53317 1.20179 1.03313 0.93458 1.02440 1.21642 0.98394 1.00114 0.96296 1.25945 1.06525 0.96139 1.06865 1.82678 1.30921 1.09720 1.25242 1.25708 1.04788 0.97705 1.06032 0.94384 0.89646 0.97868 0.89930 0.89485 0.91268 0.90646 1.00239 0.92248 0.82376 0.77952 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.61 11.21 21.65 0.24 -56.37 16 2 C -0.05 -2.84 5.02 84.86 0.43 -2.42 16 3 Si 0.97 43.83 29.57 68.60 2.03 45.86 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.25 -12.86 9.63 84.03 0.81 -12.05 16 8 H 0.08 3.90 7.86 -2.91 -0.02 3.87 16 9 N -0.60 -28.73 2.30 -689.74 -1.59 -30.32 16 10 C 0.13 5.05 5.52 86.55 0.48 5.52 16 11 C 0.11 3.28 3.06 45.32 0.14 3.41 16 12 H 0.13 3.25 4.99 -2.39 -0.01 3.23 16 13 C -0.10 -3.00 6.16 31.41 0.19 -2.81 16 14 C -0.10 -3.50 6.19 31.55 0.20 -3.31 16 15 C 0.11 4.44 4.06 45.47 0.18 4.62 16 16 H 0.08 3.25 7.95 -2.38 -0.02 3.23 16 17 C 0.19 9.57 4.70 86.15 0.40 9.97 16 18 N -0.60 -22.73 2.74 -761.27 -2.08 -24.82 16 19 C 0.58 23.12 7.79 86.59 0.67 23.79 16 20 O -0.60 -28.53 17.21 -4.17 -0.07 -28.61 16 21 C -0.18 -5.35 5.80 -19.87 -0.12 -5.47 16 22 C -0.14 -3.25 8.44 22.67 0.19 -3.05 16 23 C -0.22 -3.67 11.12 66.64 0.74 -2.92 16 24 S 0.25 3.95 23.02 -56.49 -1.30 2.65 16 25 C -0.20 -5.09 10.61 67.30 0.71 -4.37 16 26 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.09 2.88 7.97 -2.38 -0.02 2.86 16 28 H 0.00 0.14 7.73 -2.39 -0.02 0.12 16 29 H 0.08 2.43 7.83 -2.39 -0.02 2.41 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 2.59 7.86 -2.39 -0.02 2.57 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 34 H 0.06 3.31 6.53 -2.39 -0.02 3.29 16 35 H 0.16 3.75 4.75 -2.91 -0.01 3.74 16 36 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.17 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -72.05 307.79 3.35 -68.70 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.09 Total: 11.99 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.04 Total: 10.92 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -3.43 Total: -111.51 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.07 Total: -28.61 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.30 Total: 2.65 kcal Total: -72.05 3.35 -68.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017333125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.702 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds