Wall clock time and date at job start Tue Mar 31 2020 06:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00383 * 2 1 4 4 H 1.48498 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47020 * 299.99972 * 3 2 1 6 6 H 1.48496 * 109.46725 * 59.99837 * 3 2 1 7 7 C 1.38816 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49093 * 180.02562 * 9 7 2 11 11 C 1.53935 * 86.11549 * 155.35893 * 10 9 7 12 12 N 1.46501 * 113.74239 * 137.95239 * 11 10 9 13 13 C 1.34777 * 120.00364 * 154.99983 * 12 11 10 14 14 O 1.21280 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00217 * 180.02562 * 13 12 11 16 16 H 1.08999 * 115.56084 * 34.30444 * 15 13 12 17 17 C 1.52999 * 117.49296 * 248.62021 * 15 13 12 18 18 C 1.52994 * 117.50063 * 179.97438 * 15 13 12 19 19 H 1.09006 * 117.51476 * 0.02562 * 18 15 13 20 20 C 1.50693 * 117.50227 * 214.97469 * 18 15 13 21 21 C 1.38433 * 122.53989 * 119.93804 * 20 18 15 22 22 C 1.33389 * 114.92022 * 180.02562 * 21 20 18 23 23 S 1.75889 * 109.59326 * 359.97438 * 22 21 20 24 24 C 1.33388 * 122.54245 * 299.96485 * 20 18 15 25 25 C 1.47580 * 134.49353 * 0.02562 * 9 7 2 26 26 H 0.97003 * 119.99362 * 359.97438 * 1 2 3 27 27 H 1.09002 * 113.76605 * 41.05588 * 10 9 7 28 28 H 1.08999 * 113.76755 * 269.66514 * 10 9 7 29 29 H 1.09005 * 113.74572 * 269.15035 * 11 10 9 30 30 H 0.97006 * 120.00352 * 335.00082 * 12 11 10 31 31 H 1.09003 * 117.49676 * 145.02266 * 17 15 13 32 32 H 1.08994 * 117.52297 * 359.97438 * 17 15 13 33 33 H 1.07998 * 122.53579 * 0.04200 * 21 20 18 34 34 H 1.07995 * 125.20209 * 180.26467 * 22 21 20 35 35 H 1.08006 * 125.20143 * 359.97438 * 24 20 18 36 36 H 1.08994 * 113.77353 * 90.33949 * 25 9 7 37 37 H 1.09002 * 113.76826 * 318.93252 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7199 -3.8102 -0.0005 11 6 0.3469 -4.0829 0.6398 12 7 -0.3336 -5.2612 0.0969 13 6 -1.2456 -5.9160 0.8426 14 8 -1.5027 -5.5300 1.9632 15 6 -1.9452 -7.1285 0.2843 16 1 -1.3465 -7.7533 -0.3785 17 6 -3.4392 -7.0038 -0.0208 18 6 -2.9693 -7.8281 1.1801 19 1 -3.1377 -7.4113 2.1731 20 6 -3.0735 -9.3279 1.0781 21 6 -2.8439 -10.1653 2.1563 22 6 -2.9773 -11.4666 1.8957 23 16 -3.4171 -11.6880 0.2071 24 6 -3.3934 -9.9494 -0.0579 25 6 -0.1034 -2.7573 -0.0005 26 1 -0.4849 0.8401 0.0004 27 1 2.5622 -4.0324 0.6547 28 1 1.8317 -4.2351 -0.9981 29 1 0.3592 -4.0639 1.7296 30 1 -0.1278 -5.5703 -0.7992 31 1 -3.8235 -7.5468 -0.8844 32 1 -3.9166 -6.0453 0.1824 33 1 -2.5772 -9.7930 3.1344 34 1 -2.8411 -12.2624 2.6131 35 1 -3.6058 -9.4599 -0.9970 36 1 -0.5274 -2.8730 -0.9980 37 1 -0.7170 -2.1390 0.6548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030523797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:19 Heat of formation + Delta-G solvation = 81.234176 kcal Electronic energy + Delta-G solvation = -19895.287019 eV Core-core repulsion = 16767.147502 eV Total energy + Delta-G solvation = -3128.139517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12073 -38.76126 -37.52295 -35.50914 -33.48359 -31.79644 -29.56285 -27.60288 -25.52292 -24.83282 -24.55689 -22.50596 -21.62372 -19.98662 -19.45694 -18.75706 -18.25556 -16.83728 -16.77280 -15.97971 -15.55383 -14.97424 -14.54479 -14.26132 -13.90533 -13.71003 -13.40589 -12.93973 -12.93339 -12.69889 -12.30295 -11.93515 -11.90299 -11.48027 -11.45223 -11.02523 -10.93172 -10.82244 -10.76088 -10.61454 -10.43567 -10.03143 -9.59264 -9.51029 -9.02854 -8.82730 -8.53096 -8.42841 -6.93385 -5.78908 -3.12934 0.73346 1.40496 1.72239 2.31054 2.78963 3.37584 3.41705 3.46180 3.47975 3.88073 4.40742 4.47886 4.65587 4.76696 4.79968 4.99549 5.09423 5.17132 5.22028 5.37813 5.46957 5.55650 5.57694 5.66881 5.83539 5.98494 6.01742 6.12825 6.20788 6.30188 6.40596 6.55130 6.76352 7.22437 7.35533 7.54919 7.89130 7.95458 8.55736 9.01611 9.67623 10.54224 11.37873 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.051681 B = 0.002473 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.652475 B =11319.455392 C =11400.709692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.225 4.225 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.112 3.888 11 C 0.091 3.909 12 N -0.710 5.710 13 C 0.540 3.460 14 O -0.543 6.543 15 C -0.174 4.174 16 H 0.123 0.877 17 C -0.143 4.143 18 C -0.068 4.068 19 H 0.129 0.871 20 C -0.065 4.065 21 C -0.123 4.123 22 C -0.212 4.212 23 S 0.087 5.913 24 C -0.214 4.214 25 C 0.154 3.846 26 H 0.254 0.746 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.397 0.603 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.028 0.972 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 -23.532 -0.964 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.352 4.352 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.014 4.014 12 N -0.360 5.360 13 C 0.325 3.675 14 O -0.421 6.421 15 C -0.196 4.196 16 H 0.140 0.860 17 C -0.181 4.181 18 C -0.089 4.089 19 H 0.147 0.853 20 C -0.077 4.077 21 C -0.153 4.153 22 C -0.347 4.347 23 S 0.351 5.649 24 C -0.349 4.349 25 C 0.028 3.972 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.129 0.871 30 H 0.231 0.769 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.161 0.839 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.046 0.954 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.035 -24.167 -1.063 25.490 hybrid contribution 0.928 1.951 0.183 2.168 sum -7.106 -22.217 -0.879 23.342 Atomic orbital electron populations 1.69846 1.05054 1.25378 1.56225 1.24834 0.95717 0.97682 1.02183 0.86011 0.78707 0.83514 0.77299 1.20395 1.21704 1.21587 1.19033 0.90283 0.81595 1.44316 0.89984 1.45684 1.02465 0.99196 1.86030 1.22883 0.94728 0.86840 0.97068 1.23921 0.93333 0.84182 0.99952 1.46062 1.41281 1.30367 1.18276 1.19544 0.79465 0.83132 0.85352 1.90693 1.64155 1.67803 1.19444 1.22410 0.93295 0.99091 1.04777 0.85953 1.23104 0.93516 1.02342 0.99096 1.20732 1.01917 0.88490 0.97718 0.85343 1.18243 1.02082 0.94657 0.92753 1.20091 1.02686 0.92108 1.00443 1.25588 1.09708 1.00331 0.99101 1.84255 1.69019 1.05392 1.06254 1.25452 1.10595 0.96193 1.02681 1.22668 0.88187 0.89184 0.97177 0.93576 0.93252 0.94704 0.87104 0.76913 0.87814 0.87418 0.83892 0.81819 0.81757 0.95395 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 11.38 55.49 0.63 -26.97 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.69 3.70 -178.13 -0.66 -16.35 16 10 C 0.11 2.24 8.69 -2.98 -0.03 2.22 16 11 C 0.09 1.78 4.43 -70.16 -0.31 1.47 16 12 N -0.71 -10.95 5.36 -55.35 -0.30 -11.24 16 13 C 0.54 8.43 7.61 -10.98 -0.08 8.34 16 14 O -0.54 -10.70 15.86 5.56 0.09 -10.61 16 15 C -0.17 -1.96 5.85 -91.77 -0.54 -2.50 16 16 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.14 -1.41 9.63 -26.71 -0.26 -1.66 16 18 C -0.07 -0.73 5.66 -91.75 -0.52 -1.25 16 19 H 0.13 1.59 7.67 -51.93 -0.40 1.19 16 20 C -0.07 -0.64 5.52 -106.25 -0.59 -1.22 16 21 C -0.12 -1.14 9.98 -41.20 -0.41 -1.56 16 22 C -0.21 -1.70 11.23 29.04 0.33 -1.38 16 23 S 0.09 0.68 23.34 -107.50 -2.51 -1.83 16 24 C -0.21 -1.83 10.39 29.04 0.30 -1.53 16 25 C 0.15 3.71 7.32 -2.98 -0.02 3.69 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.11 2.38 7.46 -51.93 -0.39 1.99 16 30 H 0.40 4.93 8.73 -40.82 -0.36 4.58 16 31 H 0.10 0.77 6.54 -51.93 -0.34 0.43 16 32 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.17 1.13 6.64 -52.48 -0.35 0.78 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 2.10 7.15 -51.93 -0.37 1.73 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -33.28 330.18 -9.88 -43.16 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.71 Total: 3.84 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.38 Total: -2.20 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.32 Total: -54.56 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.28 -9.88 -43.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030523797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.399 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds