Wall clock time and date at job start Tue Mar 31 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48496 * 109.47251 * 240.00090 * 3 2 1 5 5 H 1.48499 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46774 * 120.00094 * 3 2 1 7 7 C 1.38813 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99938 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.47588 * 134.48815 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11395 * 155.36001 * 10 9 7 12 12 N 1.46497 * 113.73951 * 137.95348 * 11 10 9 13 13 C 1.34778 * 119.99763 * 156.92548 * 12 11 10 14 14 O 1.21694 * 120.00334 * 359.97438 * 13 12 11 15 15 C 1.46583 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.36651 * 125.45930 * 179.97438 * 15 13 12 17 17 C 1.37472 * 113.29997 * 179.97438 * 16 15 13 18 18 C 1.33819 * 115.09820 * 359.97438 * 17 16 15 19 19 C 1.50706 * 124.52097 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.49668 * 240.00491 * 19 18 17 21 21 C 1.53000 * 60.02940 * 252.51929 * 20 19 18 22 22 S 1.70615 * 110.95576 * 0.23626 * 18 17 16 23 23 C 1.47811 * 134.46117 * 359.87274 * 9 7 2 24 24 H 0.96999 * 120.00042 * 359.97438 * 1 2 3 25 25 H 1.09000 * 113.76887 * 41.05665 * 10 9 7 26 26 H 1.09001 * 113.76761 * 269.65898 * 10 9 7 27 27 H 1.08999 * 113.73792 * 269.15030 * 11 10 9 28 28 H 0.97004 * 120.00022 * 336.91793 * 12 11 10 29 29 H 1.08000 * 123.34914 * 359.95903 * 16 15 13 30 30 H 1.07994 * 122.44964 * 180.02562 * 17 16 15 31 31 H 1.09000 * 115.55924 * 25.68896 * 19 18 17 32 32 H 1.09002 * 117.49918 * 145.01964 * 20 19 18 33 33 H 1.09002 * 117.49754 * 0.02562 * 20 19 18 34 34 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 35 35 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 36 36 H 1.09000 * 113.76915 * 90.37402 * 23 9 7 37 37 H 1.09000 * 113.83513 * 318.91611 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.7202 -3.8102 -0.0005 11 6 0.3470 -4.0829 0.6398 12 7 -0.3333 -5.2613 0.0969 13 6 -1.2733 -5.8930 0.8277 14 8 -1.5566 -5.4849 1.9386 15 6 -1.9544 -7.0718 0.2842 16 6 -2.9202 -7.7952 0.9255 17 6 -3.3896 -8.8532 0.1838 18 6 -2.8295 -8.9928 -1.0235 19 6 -3.1833 -10.0768 -2.0089 20 6 -2.0665 -11.0277 -2.4442 21 6 -2.5935 -9.9714 -3.4174 22 16 -1.6564 -7.7842 -1.2954 23 6 -0.1058 -2.7571 0.0023 24 1 -0.4850 0.8400 0.0004 25 1 2.5624 -4.0324 0.6547 26 1 1.8319 -4.2351 -0.9981 27 1 0.3595 -4.0639 1.7296 28 1 -0.1074 -5.5868 -0.7885 29 1 -3.2788 -7.5594 1.9166 30 1 -4.1550 -9.5222 0.5484 31 1 -4.1874 -10.4901 -1.9130 32 1 -2.3358 -12.0666 -2.6347 33 1 -1.0760 -10.8695 -2.0175 34 1 -1.9498 -9.1179 -3.6309 35 1 -3.2092 -10.3153 -4.2486 36 1 -0.5319 -2.8717 -0.9944 37 1 -0.7184 -2.1402 0.6597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031258513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:47 Heat of formation + Delta-G solvation = 78.638058 kcal Electronic energy + Delta-G solvation = -19928.202704 eV Core-core repulsion = 16799.950611 eV Total energy + Delta-G solvation = -3128.252093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64625 -38.64109 -37.58473 -36.48947 -33.55980 -31.86220 -29.87045 -27.51299 -25.51303 -24.84231 -23.18264 -22.82551 -21.99428 -21.16172 -19.88973 -19.05858 -17.93643 -16.80805 -16.35622 -15.77263 -15.43196 -15.06811 -15.01131 -14.57328 -14.04324 -13.84395 -13.37928 -13.14989 -12.70533 -12.57452 -12.30930 -11.98982 -11.85228 -11.48092 -11.46164 -11.15008 -11.00219 -10.88360 -10.78661 -10.77900 -10.47379 -10.07961 -9.74356 -9.54282 -8.81303 -8.75219 -8.72466 -8.43038 -6.93237 -5.77534 -3.11943 0.39739 1.29600 1.73948 2.27636 3.36252 3.39284 3.41907 3.45385 3.47245 3.48826 4.09869 4.38880 4.45421 4.53923 4.84799 4.93420 5.16026 5.18741 5.20963 5.32295 5.46066 5.47086 5.55222 5.60775 5.65984 5.85823 5.96105 6.07370 6.19480 6.22805 6.38123 6.53729 6.70114 7.22425 7.33477 7.54325 7.79006 7.95560 8.43546 9.02036 9.68479 10.54630 11.39097 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.003031 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.276322 B = 9237.164875 C = 9632.938065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.092 3.908 12 N -0.710 5.710 13 C 0.586 3.414 14 O -0.530 6.530 15 C -0.258 4.258 16 C -0.058 4.058 17 C -0.148 4.148 18 C -0.170 4.170 19 C -0.090 4.090 20 C -0.167 4.167 21 C -0.176 4.176 22 S 0.201 5.799 23 C 0.154 3.846 24 H 0.256 0.744 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.113 0.887 28 H 0.393 0.607 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.029 0.971 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -23.043 -5.501 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.013 4.013 12 N -0.360 5.360 13 C 0.371 3.629 14 O -0.409 6.409 15 C -0.378 4.378 16 C -0.091 4.091 17 C -0.179 4.179 18 C -0.289 4.289 19 C -0.110 4.110 20 C -0.205 4.205 21 C -0.214 4.214 22 S 0.470 5.530 23 C 0.028 3.972 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.131 0.869 28 H 0.227 0.773 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.047 0.953 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.315 -21.983 -5.890 23.371 hybrid contribution -0.554 0.347 0.572 0.869 sum -5.869 -21.636 -5.317 23.040 Atomic orbital electron populations 1.69822 1.05054 1.25651 1.55940 1.24829 0.95703 0.97666 1.02088 0.86159 0.78447 0.82932 0.77946 1.21133 1.21504 1.20967 1.18935 0.90228 0.81583 1.44716 0.90052 1.45699 1.02366 0.99124 1.86095 1.22875 0.94557 0.86912 0.97079 1.23989 0.93398 0.83826 1.00074 1.46053 1.39580 1.31005 1.19380 1.16971 0.79477 0.81412 0.85048 1.90827 1.64401 1.66162 1.19490 1.24804 1.08066 1.04695 1.00242 1.20736 0.94305 0.93036 1.00990 1.19866 1.03870 1.00430 0.93751 1.23461 1.03710 1.02154 0.99589 1.20488 0.99158 0.97465 0.93905 1.23139 0.98343 0.96159 1.02851 1.23132 1.03843 1.01850 0.92551 1.82909 1.35682 1.20162 1.14295 1.22718 0.88190 0.89015 0.97285 0.93442 0.93067 0.94711 0.86870 0.77339 0.82886 0.83937 0.85870 0.87928 0.88258 0.88353 0.87699 0.95298 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 11.39 55.49 0.63 -27.07 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.92 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.75 3.70 -177.87 -0.66 -16.40 16 10 C 0.11 2.28 8.69 -2.96 -0.03 2.26 16 11 C 0.09 1.84 4.40 -70.15 -0.31 1.53 16 12 N -0.71 -11.79 5.37 -56.69 -0.30 -12.09 16 13 C 0.59 10.12 7.78 -12.89 -0.10 10.02 16 14 O -0.53 -11.10 16.46 5.19 0.09 -11.01 16 15 C -0.26 -3.56 6.45 -36.79 -0.24 -3.80 16 16 C -0.06 -0.72 10.01 -40.43 -0.40 -1.12 16 17 C -0.15 -1.50 10.00 -41.41 -0.41 -1.91 16 18 C -0.17 -1.65 5.93 -35.86 -0.21 -1.86 16 19 C -0.09 -0.66 6.20 -91.73 -0.57 -1.23 16 20 C -0.17 -1.04 10.23 -26.73 -0.27 -1.32 16 21 C -0.18 -1.14 10.01 -26.70 -0.27 -1.41 16 22 S 0.20 2.12 20.82 -107.50 -2.24 -0.12 16 23 C 0.15 3.77 7.32 -2.85 -0.02 3.75 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 27 H 0.11 2.44 7.50 -51.93 -0.39 2.05 16 28 H 0.39 5.48 7.83 -40.82 -0.32 5.16 16 29 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.68 7.20 -51.92 -0.37 0.31 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 2.17 7.17 -51.93 -0.37 1.80 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -33.29 330.75 -10.42 -43.70 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.80 Total: 2.69 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.09 Total: -1.94 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.33 Total: -55.57 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.24 Total: -0.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.29 -10.42 -43.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031258513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.343 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds