Wall clock time and date at job start Tue Mar 31 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48496 * 109.47251 * 240.00090 * 3 2 1 5 5 H 1.48499 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46774 * 120.00094 * 3 2 1 7 7 C 1.38813 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99938 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.47588 * 134.48815 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11395 * 155.36001 * 10 9 7 12 12 N 1.46497 * 113.73951 * 137.95348 * 11 10 9 13 13 C 1.34778 * 119.99763 * 156.92548 * 12 11 10 14 14 O 1.21694 * 120.00334 * 359.97438 * 13 12 11 15 15 C 1.46583 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.36651 * 125.45930 * 179.97438 * 15 13 12 17 17 C 1.37472 * 113.29997 * 179.97438 * 16 15 13 18 18 C 1.33819 * 115.09820 * 359.97438 * 17 16 15 19 19 C 1.50706 * 124.52097 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.49668 * 240.00491 * 19 18 17 21 21 C 1.53000 * 60.02940 * 252.51929 * 20 19 18 22 22 S 1.70615 * 110.95576 * 0.23626 * 18 17 16 23 23 C 1.47811 * 134.46117 * 359.87274 * 9 7 2 24 24 H 0.96999 * 120.00042 * 359.97438 * 1 2 3 25 25 H 1.09000 * 113.76887 * 41.05665 * 10 9 7 26 26 H 1.09001 * 113.76761 * 269.65898 * 10 9 7 27 27 H 1.08999 * 113.73792 * 269.15030 * 11 10 9 28 28 H 0.97004 * 120.00022 * 336.91793 * 12 11 10 29 29 H 1.08000 * 123.34914 * 359.95903 * 16 15 13 30 30 H 1.07994 * 122.44964 * 180.02562 * 17 16 15 31 31 H 1.09000 * 115.55924 * 25.68896 * 19 18 17 32 32 H 1.09002 * 117.49918 * 145.01964 * 20 19 18 33 33 H 1.09002 * 117.49754 * 0.02562 * 20 19 18 34 34 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 35 35 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 36 36 H 1.09000 * 113.76915 * 90.37402 * 23 9 7 37 37 H 1.09000 * 113.83513 * 318.91611 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.7202 -3.8102 -0.0005 11 6 0.3470 -4.0829 0.6398 12 7 -0.3333 -5.2613 0.0969 13 6 -1.2733 -5.8930 0.8277 14 8 -1.5566 -5.4849 1.9386 15 6 -1.9544 -7.0718 0.2842 16 6 -2.9202 -7.7952 0.9255 17 6 -3.3896 -8.8532 0.1838 18 6 -2.8295 -8.9928 -1.0235 19 6 -3.1833 -10.0768 -2.0089 20 6 -2.0665 -11.0277 -2.4442 21 6 -2.5935 -9.9714 -3.4174 22 16 -1.6564 -7.7842 -1.2954 23 6 -0.1058 -2.7571 0.0023 24 1 -0.4850 0.8400 0.0004 25 1 2.5624 -4.0324 0.6547 26 1 1.8319 -4.2351 -0.9981 27 1 0.3595 -4.0639 1.7296 28 1 -0.1074 -5.5868 -0.7885 29 1 -3.2788 -7.5594 1.9166 30 1 -4.1550 -9.5222 0.5484 31 1 -4.1874 -10.4901 -1.9130 32 1 -2.3358 -12.0666 -2.6347 33 1 -1.0760 -10.8695 -2.0175 34 1 -1.9498 -9.1179 -3.6309 35 1 -3.2092 -10.3153 -4.2486 36 1 -0.5319 -2.8717 -0.9944 37 1 -0.7184 -2.1402 0.6597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031258513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:46 Heat of formation + Delta-G solvation = 57.448628 kcal Electronic energy + Delta-G solvation = -19929.121546 eV Core-core repulsion = 16799.950611 eV Total energy + Delta-G solvation = -3129.170936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09146 -39.61219 -39.00867 -37.31005 -35.23384 -33.82723 -30.90883 -29.37449 -26.69921 -26.60800 -24.85512 -23.30549 -22.69815 -22.44908 -21.50874 -20.19898 -19.06347 -18.78822 -17.55744 -17.00223 -16.85123 -16.38953 -16.10081 -15.82962 -15.71045 -15.12898 -14.68018 -14.28190 -14.05398 -13.70334 -13.39592 -13.29633 -13.26072 -13.01329 -12.80049 -12.65696 -12.42952 -12.36142 -12.00541 -11.92594 -11.64880 -11.56214 -11.33253 -11.18604 -10.89667 -10.13948 -9.57337 -9.49602 -9.00568 -7.93162 -5.29390 -0.55453 0.40872 0.86629 1.33987 1.45083 1.49627 1.55746 2.02184 2.14041 2.48556 2.96566 3.22182 3.36626 3.47963 3.76870 3.79896 3.86724 4.05322 4.27044 4.31182 4.34592 4.45129 4.50463 4.69832 4.77443 4.85891 4.98101 5.02127 5.05249 5.12486 5.19258 5.19479 5.21667 5.37063 5.44869 5.60921 5.86223 6.42505 6.85697 7.08721 7.56119 8.48382 9.23508 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.003031 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.276322 B = 9237.164875 C = 9632.938065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.986 3.014 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.637 5.637 10 C 0.123 3.877 11 C 0.118 3.882 12 N -0.700 5.700 13 C 0.586 3.414 14 O -0.578 6.578 15 C -0.303 4.303 16 C -0.051 4.051 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.104 4.104 20 C -0.159 4.159 21 C -0.177 4.177 22 S 0.234 5.766 23 C 0.152 3.848 24 H 0.249 0.751 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.408 0.592 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.026 0.974 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 -25.542 -7.127 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.366 4.366 8 H 0.110 0.890 9 N -0.364 5.364 10 C -0.002 4.002 11 C 0.012 3.988 12 N -0.351 5.351 13 C 0.374 3.626 14 O -0.459 6.459 15 C -0.423 4.423 16 C -0.085 4.085 17 C -0.188 4.188 18 C -0.275 4.275 19 C -0.124 4.124 20 C -0.197 4.197 21 C -0.214 4.214 22 S 0.503 5.497 23 C 0.025 3.975 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.245 0.755 29 H 0.166 0.834 30 H 0.186 0.814 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.044 0.956 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.725 -24.538 -7.551 26.105 hybrid contribution -0.777 0.945 1.013 1.588 sum -5.501 -23.593 -6.538 25.093 Atomic orbital electron populations 1.70042 1.06726 1.25865 1.57777 1.25758 0.96579 1.01329 1.02591 0.85053 0.77039 0.78167 0.78458 1.19838 1.22223 1.20042 1.19416 0.91038 0.82782 1.43335 0.88989 1.46018 1.03148 1.00821 1.86414 1.23017 0.94777 0.83652 0.98778 1.23292 0.93371 0.83270 0.98837 1.45769 1.39411 1.29840 1.20065 1.17422 0.78843 0.81945 0.84374 1.90793 1.65776 1.67796 1.21563 1.24477 1.09946 1.04889 1.02968 1.20934 0.93460 0.93175 1.00960 1.20031 1.04758 1.00290 0.93711 1.23912 1.02113 1.01733 0.99760 1.20682 1.00550 0.97324 0.93849 1.23236 0.97507 0.97048 1.01932 1.23241 1.03769 1.01800 0.92594 1.82723 1.35646 1.19731 1.11556 1.22588 0.87509 0.90854 0.96502 0.94225 0.91285 0.91605 0.88584 0.75512 0.83407 0.81351 0.84057 0.85994 0.88815 0.89042 0.86005 0.95639 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.73 11.39 21.65 0.25 -59.48 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.99 46.37 29.55 68.60 2.03 48.39 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.24 -13.51 10.70 84.03 0.90 -12.61 16 8 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 9 N -0.64 -33.38 3.70 -716.67 -2.65 -36.03 16 10 C 0.12 4.84 8.69 86.49 0.75 5.59 16 11 C 0.12 4.82 4.40 46.74 0.21 5.02 16 12 N -0.70 -23.23 5.37 -451.48 -2.42 -25.65 16 13 C 0.59 20.69 7.78 86.42 0.67 21.36 16 14 O -0.58 -25.27 16.46 -4.33 -0.07 -25.34 16 15 C -0.30 -8.28 6.45 24.08 0.16 -8.13 16 16 C -0.05 -1.24 10.01 21.72 0.22 -1.02 16 17 C -0.16 -2.86 10.00 21.08 0.21 -2.65 16 18 C -0.16 -2.61 5.93 24.68 0.15 -2.47 16 19 C -0.10 -1.17 6.20 -11.51 -0.07 -1.25 16 20 C -0.16 -1.44 10.23 30.60 0.31 -1.12 16 21 C -0.18 -1.70 10.01 30.62 0.31 -1.40 16 22 S 0.23 4.52 20.82 -56.49 -1.18 3.34 16 23 C 0.15 7.71 7.32 86.44 0.63 8.35 16 24 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 25 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 27 H 0.10 4.30 7.50 -2.39 -0.02 4.28 16 28 H 0.41 10.95 7.83 -92.71 -0.73 10.22 16 29 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.02 7.20 -2.38 -0.02 1.00 16 35 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.03 2.06 7.17 -2.39 -0.02 2.04 16 Total: -1.00 -74.53 330.75 1.22 -73.30 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.37 Total: 15.37 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 4.91 Total: 6.09 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -4.83 Total: -121.17 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.07 Total: -25.34 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.18 Total: 3.34 kcal Total: -74.53 1.22 -73.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031258513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.752 kcal (2) G-P(sol) polarization free energy of solvation -74.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds