Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00185 * 2 1 4 4 H 1.48502 * 109.47102 * 274.99002 * 3 2 1 5 5 H 1.48494 * 109.47179 * 34.98713 * 3 2 1 6 6 H 1.48502 * 109.47256 * 154.98965 * 3 2 1 7 7 C 1.38818 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99994 * 185.06201 * 7 2 1 9 9 N 1.36939 * 119.99975 * 5.05620 * 7 2 1 10 10 C 1.47576 * 134.49233 * 173.48082 * 9 7 2 11 11 C 1.53951 * 86.11610 * 155.36473 * 10 9 7 12 12 N 1.46495 * 113.74195 * 137.95457 * 11 10 9 13 13 C 1.34778 * 120.00027 * 156.92311 * 12 11 10 14 14 O 1.21702 * 120.00055 * 0.02562 * 13 12 11 15 15 C 1.46580 * 119.99911 * 180.02562 * 13 12 11 16 16 S 1.75823 * 125.46166 * 0.32330 * 15 13 12 17 17 C 1.70620 * 91.56609 * 180.02562 * 16 15 13 18 18 C 1.33814 * 110.95307 * 359.65116 * 17 16 15 19 19 C 1.36651 * 125.45744 * 180.02562 * 15 13 12 20 20 C 1.50709 * 123.34969 * 359.97438 * 19 15 13 21 21 C 1.52994 * 117.49773 * 188.76205 * 20 19 15 22 22 C 1.52999 * 117.49817 * 120.10287 * 20 19 15 23 23 C 1.47811 * 134.45477 * 353.35668 * 9 7 2 24 24 H 0.96998 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09005 * 113.76770 * 41.06489 * 10 9 7 26 26 H 1.09002 * 113.77445 * 269.66395 * 10 9 7 27 27 H 1.09003 * 113.73615 * 269.15536 * 11 10 9 28 28 H 0.97005 * 120.00183 * 336.92383 * 12 11 10 29 29 H 1.07993 * 124.52408 * 179.97438 * 17 16 15 30 30 H 1.07997 * 122.44889 * 180.24377 * 18 17 16 31 31 H 1.09001 * 115.55038 * 334.42664 * 20 19 15 32 32 H 1.09008 * 117.49786 * 359.97438 * 21 20 19 33 33 H 1.08997 * 117.50209 * 145.01934 * 21 20 19 34 34 H 1.09004 * 117.49098 * 214.97922 * 22 20 19 35 35 H 1.08997 * 117.49996 * 359.97438 * 22 20 19 36 36 H 1.08998 * 113.76885 * 90.37325 * 23 9 7 37 37 H 1.08997 * 113.83588 * 318.91251 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0820 9 7 1.3295 -2.3858 -0.1056 10 6 1.7286 -3.7983 -0.2581 11 6 0.3708 -4.1420 0.3811 12 7 -0.3176 -5.2631 -0.2633 13 6 -1.2390 -5.9707 0.4200 14 8 -1.4994 -5.6779 1.5723 15 6 -1.9274 -7.0928 -0.2246 16 16 -1.6584 -7.6436 -1.8725 17 6 -2.8211 -8.8802 -1.6987 18 6 -3.3562 -8.8649 -0.4723 19 6 -2.8769 -7.8821 0.3609 20 6 -3.3493 -7.6957 1.7798 21 6 -4.2620 -8.7736 2.3678 22 6 -4.8354 -7.4037 1.9970 23 6 -0.1002 -2.7609 -0.1094 24 1 -0.4850 0.8400 0.0004 25 1 2.5859 -4.0811 0.3528 26 1 1.8195 -4.1197 -1.2957 27 1 0.4075 -4.2331 1.4667 28 1 -0.1103 -5.4963 -1.1818 29 1 -3.0857 -9.5847 -2.4731 30 1 -4.1106 -9.5720 -0.1604 31 1 -2.6385 -7.2162 2.4528 32 1 -4.5211 -9.6175 1.7283 33 1 -4.1520 -9.0030 3.4277 34 1 -5.1022 -6.7322 2.8132 35 1 -5.4713 -7.3459 1.1137 36 1 -0.5476 -2.7767 -1.1032 37 1 -0.7003 -2.2168 0.6200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031350067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = 81.500764 kcal Electronic energy + Delta-G solvation = -20364.814867 eV Core-core repulsion = 17236.686910 eV Total energy + Delta-G solvation = -3128.127957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.91922 -38.74516 -37.31223 -35.71365 -33.54483 -31.87575 -30.01508 -27.50581 -25.41160 -24.84087 -23.19773 -22.49889 -22.15885 -21.09500 -19.81105 -18.47191 -17.86954 -16.77855 -16.52735 -15.80513 -15.20743 -15.04093 -14.75278 -14.50867 -13.88824 -13.83954 -13.57622 -13.12078 -12.70995 -12.52068 -11.99953 -11.83170 -11.57570 -11.48318 -11.44212 -11.12176 -10.87568 -10.80326 -10.72587 -10.47310 -10.40238 -10.03677 -9.57313 -9.52171 -8.93202 -8.81211 -8.50322 -8.41162 -6.92172 -5.79618 -3.12866 0.43329 1.37354 1.75839 2.23756 3.34342 3.38239 3.41295 3.46443 3.47983 3.93995 4.45339 4.57589 4.71767 4.87942 4.93365 5.01637 5.13752 5.23735 5.36249 5.45256 5.53222 5.57172 5.72903 5.86648 5.93357 6.01051 6.03831 6.16071 6.19682 6.38143 6.44895 6.56263 6.73312 7.22828 7.33452 7.54422 7.81070 7.94614 8.46387 9.01377 9.67753 10.54913 11.37696 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.003462 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.505424 B = 8085.429668 C = 8691.884986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.112 3.888 11 C 0.092 3.908 12 N -0.711 5.711 13 C 0.587 3.413 14 O -0.526 6.526 15 C -0.256 4.256 16 S 0.198 5.802 17 C -0.234 4.234 18 C -0.146 4.146 19 C 0.003 3.997 20 C -0.100 4.100 21 C -0.179 4.179 22 C -0.162 4.162 23 C 0.157 3.843 24 H 0.255 0.745 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.113 0.887 28 H 0.393 0.607 29 H 0.167 0.833 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.031 0.969 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -20.560 -2.703 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.015 4.015 11 C -0.012 4.012 12 N -0.361 5.361 13 C 0.373 3.627 14 O -0.405 6.405 15 C -0.377 4.377 16 S 0.467 5.533 17 C -0.371 4.371 18 C -0.178 4.178 19 C -0.012 4.012 20 C -0.120 4.120 21 C -0.217 4.217 22 C -0.200 4.200 23 C 0.031 3.969 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.131 0.869 28 H 0.227 0.773 29 H 0.185 0.815 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.595 -19.499 -3.080 20.813 hybrid contribution -0.507 0.217 0.297 0.626 sum -7.102 -19.281 -2.783 20.735 Atomic orbital electron populations 1.69844 1.05106 1.25555 1.55705 1.24852 0.95682 0.97656 1.01974 0.86097 0.78748 0.83402 0.77506 1.21572 1.21623 1.20461 1.18991 0.90745 0.81665 1.44092 0.89976 1.45699 1.02382 1.00530 1.84693 1.22879 0.94643 0.86812 0.97152 1.23987 0.93351 0.85088 0.98814 1.46052 1.40674 1.33274 1.16072 1.16915 0.79292 0.80690 0.85808 1.90766 1.64483 1.68457 1.16779 1.24560 1.08285 1.05673 0.99142 1.83050 1.36602 1.24029 1.09620 1.25187 1.04267 1.05545 1.02120 1.19836 1.03764 1.01091 0.93075 1.18686 0.93966 0.93165 0.95355 1.21000 0.94433 1.03645 0.92948 1.23057 1.04405 0.92621 1.01578 1.22951 0.94930 0.98744 1.03374 1.22658 0.88079 0.87893 0.98285 0.93495 0.93128 0.94715 0.86906 0.77342 0.81504 0.83999 0.84445 0.88842 0.88421 0.88225 0.88871 0.95146 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 11.51 55.49 0.64 -26.91 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 22.19 29.56 -169.99 -5.02 17.17 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.42 10.70 -15.06 -0.16 -6.58 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.68 3.70 -177.88 -0.66 -16.34 16 10 C 0.11 2.26 8.69 -2.97 -0.03 2.23 16 11 C 0.09 1.82 4.40 -70.15 -0.31 1.52 16 12 N -0.71 -11.65 5.37 -56.68 -0.30 -11.95 16 13 C 0.59 9.96 7.78 -12.90 -0.10 9.86 16 14 O -0.53 -10.49 13.92 5.19 0.07 -10.42 16 15 C -0.26 -3.55 6.45 -36.79 -0.24 -3.79 16 16 S 0.20 2.02 22.16 -107.50 -2.38 -0.36 16 17 C -0.23 -2.09 10.92 29.18 0.32 -1.77 16 18 C -0.15 -1.47 9.46 -41.41 -0.39 -1.87 16 19 C 0.00 0.04 5.60 -105.47 -0.59 -0.55 16 20 C -0.10 -1.28 5.44 -91.77 -0.50 -1.78 16 21 C -0.18 -1.71 9.95 -26.70 -0.27 -1.97 16 22 C -0.16 -1.76 10.22 -26.69 -0.27 -2.03 16 23 C 0.16 3.81 7.24 -2.84 -0.02 3.79 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 27 H 0.11 2.38 7.51 -51.93 -0.39 1.99 16 28 H 0.39 5.45 7.83 -40.82 -0.32 5.13 16 29 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.13 6.61 -52.49 -0.35 0.78 16 31 H 0.14 2.09 6.17 -51.93 -0.32 1.77 16 32 H 0.09 0.75 6.56 -51.92 -0.34 0.41 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 2.02 7.37 -51.93 -0.38 1.64 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -32.66 324.92 -10.01 -42.67 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.60 Total: 4.39 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.65 Total: -3.16 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.32 Total: -55.20 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.66 -10.01 -42.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031350067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.175 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds