Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37468 * 123.35219 * 2 1 4 4 C 1.33814 * 115.10307 * 179.76997 * 3 2 1 5 5 S 1.70623 * 110.95032 * 0.48923 * 4 3 2 6 6 C 1.36653 * 123.34951 * 180.29618 * 2 1 3 7 7 C 1.46580 * 125.45779 * 359.96254 * 6 2 1 8 8 O 1.21698 * 120.00287 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99908 * 179.97438 * 7 6 2 10 10 C 1.47872 * 126.94236 * 359.68478 * 9 7 6 11 11 C 1.55964 * 105.13140 * 180.63483 * 10 9 7 12 12 H 1.09001 * 116.55565 * 160.09733 * 11 10 9 13 13 C 1.58974 * 98.69034 * 34.63779 * 11 10 9 14 14 C 1.49286 * 126.94817 * 180.02562 * 9 7 6 15 15 H 1.09001 * 116.14986 * 16.68128 * 14 9 7 16 16 C 1.56014 * 104.09480 * 247.53597 * 14 9 7 17 17 N 1.47870 * 105.10652 * 288.76833 * 16 14 9 18 18 C 1.36939 * 126.94384 * 182.02539 * 17 16 14 19 19 H 1.07995 * 119.99392 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99912 * 359.96741 * 18 17 16 21 21 N 1.31613 * 120.00031 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99549 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47093 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47082 * 120.00074 * 22 20 18 25 25 H 1.48502 * 109.47206 * 239.99901 * 22 20 18 26 26 H 1.09001 * 109.46953 * 269.70276 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.69873 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.70504 * 1 2 3 29 29 H 1.08007 * 122.44910 * 359.97438 * 3 2 1 30 30 H 1.07997 * 124.52829 * 180.23616 * 4 3 2 31 31 H 1.09006 * 110.31520 * 300.92767 * 10 9 7 32 32 H 1.08993 * 110.31742 * 63.11662 * 10 9 7 33 33 H 1.09000 * 112.08090 * 190.73663 * 13 11 10 34 34 H 1.09007 * 113.30258 * 62.75609 * 13 11 10 35 35 H 1.08999 * 110.31324 * 47.67277 * 16 14 9 36 36 H 1.08998 * 110.31914 * 169.75280 * 16 14 9 37 37 H 0.97008 * 119.99768 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9563 0.0049 5 16 3.9623 -0.7082 -0.0038 6 6 2.2583 -1.1415 -0.0059 7 6 1.7284 -2.5081 -0.0122 8 8 0.5258 -2.6945 -0.0129 9 7 2.5730 -3.5583 -0.0182 10 6 4.0510 -3.5102 -0.0259 11 6 4.5068 -5.0016 -0.0473 12 1 5.5241 -5.1954 -0.3874 13 6 3.3355 -5.5980 -0.9415 14 6 2.2057 -5.0053 -0.0256 15 1 1.1789 -5.2388 -0.3071 16 6 2.6735 -5.5231 1.3698 17 7 4.1506 -5.5350 1.3011 18 6 5.0166 -5.9516 2.2767 19 1 6.0822 -5.9115 2.1057 20 6 4.5247 -6.4251 3.4853 21 7 3.2261 -6.4742 3.6934 22 14 5.7062 -6.9927 4.8162 23 1 7.1032 -6.8366 4.3375 24 1 5.5073 -6.1717 6.0376 25 1 5.4472 -8.4205 5.1320 26 1 -0.3633 -0.0053 1.0277 27 1 -0.3634 0.8927 -0.5091 28 1 -0.3633 -0.8873 -0.5184 29 1 1.8201 2.1334 -0.0004 30 1 4.3206 1.7490 0.0092 31 1 4.4075 -2.9714 -0.9039 32 1 4.4189 -3.0373 0.8846 33 1 3.3374 -6.6879 -0.9454 34 1 3.3104 -5.1856 -1.9502 35 1 2.3367 -4.8479 2.1564 36 1 2.2933 -6.5292 1.5471 37 1 2.8824 -6.8048 4.5381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032250824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = 57.948657 kcal Electronic energy + Delta-G solvation = -21558.253392 eV Core-core repulsion = 18429.104140 eV Total energy + Delta-G solvation = -3129.149253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08903 -38.60243 -37.03525 -33.69187 -31.69375 -30.76177 -29.30928 -28.65342 -27.59154 -25.25459 -23.89614 -23.10580 -21.51108 -20.00045 -19.17123 -18.08486 -17.91310 -16.64602 -15.82813 -15.59424 -15.25078 -14.83538 -14.30536 -13.86679 -13.72911 -13.37612 -13.08962 -12.90661 -12.34019 -12.19180 -12.06414 -11.96570 -11.69593 -11.59212 -11.34679 -11.04035 -10.95902 -10.87837 -10.62340 -10.54544 -10.20096 -10.08036 -9.68545 -9.46828 -8.74676 -8.71319 -8.38258 -7.96206 -6.97306 -5.80344 -3.15342 0.68094 1.65962 2.06973 2.49812 3.32063 3.35575 3.40328 3.43632 3.55083 4.38644 4.77546 4.92475 5.08834 5.13916 5.29656 5.32330 5.41298 5.51215 5.57269 5.61050 5.73535 5.81861 5.86258 6.01675 6.08738 6.09447 6.25207 6.36563 6.37174 6.48599 6.53737 6.62926 6.66454 7.39373 7.46083 7.69440 8.01441 8.06576 8.53427 9.06417 9.67315 10.35755 11.31767 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.005091 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.164997 B = 5498.778878 C = 5811.265512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.034 4.034 3 C -0.149 4.149 4 C -0.256 4.256 5 S 0.221 5.779 6 C -0.259 4.259 7 C 0.601 3.399 8 O -0.543 6.543 9 N -0.602 5.602 10 C 0.069 3.931 11 C 0.148 3.852 12 H 0.109 0.891 13 C -0.155 4.155 14 C 0.101 3.899 15 H 0.114 0.886 16 C 0.173 3.827 17 N -0.594 5.594 18 C -0.233 4.233 19 H 0.082 0.918 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 11.488 -10.170 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.049 4.049 3 C -0.181 4.181 4 C -0.394 4.394 5 S 0.491 5.509 6 C -0.379 4.379 7 C 0.390 3.610 8 O -0.424 6.424 9 N -0.335 5.335 10 C -0.058 4.058 11 C 0.038 3.962 12 H 0.127 0.873 13 C -0.194 4.194 14 C -0.001 4.001 15 H 0.132 0.868 16 C 0.048 3.952 17 N -0.317 5.317 18 C -0.361 4.361 19 H 0.100 0.900 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.589 10.541 -9.871 14.529 hybrid contribution -0.618 0.932 0.957 1.472 sum 0.971 11.473 -8.914 14.561 Atomic orbital electron populations 1.20687 0.88950 1.03455 1.02924 1.19459 0.97722 0.90447 0.97313 1.19837 0.92653 0.99291 1.06303 1.25563 1.00649 1.03926 1.09240 1.83555 1.04365 0.95873 1.67085 1.24503 0.97121 0.97507 1.18808 1.16490 0.85430 0.82074 0.76985 1.90729 1.13972 1.84983 1.52667 1.49066 1.07021 1.06388 1.70989 1.23444 0.79824 1.01876 1.00635 1.23388 0.96609 0.88699 0.87457 0.87311 1.24503 0.97080 1.00994 0.96866 1.24363 0.98660 0.77778 0.99305 0.86767 1.21949 0.83431 0.99758 0.90036 1.45211 1.01964 1.73608 1.10934 1.19093 0.88577 1.35938 0.92513 0.89977 1.24832 0.96082 1.01268 0.97966 1.69927 1.10461 1.51408 1.24627 0.86038 0.79753 0.78088 0.81793 1.20392 1.21757 1.21674 0.90935 0.92124 0.88913 0.84458 0.81994 0.92070 0.90560 0.89655 0.91341 0.93357 0.92396 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.55 36.01 0.34 -1.05 16 2 C -0.03 -0.51 5.90 -105.47 -0.62 -1.13 16 3 C -0.15 -1.85 9.97 -41.42 -0.41 -2.27 16 4 C -0.26 -3.00 10.92 29.18 0.32 -2.69 16 5 S 0.22 3.00 18.68 -107.50 -2.01 0.99 16 6 C -0.26 -4.33 6.39 -36.79 -0.24 -4.57 16 7 C 0.60 11.75 7.85 -12.90 -0.10 11.65 16 8 O -0.54 -11.69 14.59 5.19 0.08 -11.61 16 9 N -0.60 -11.47 2.94 -158.39 -0.47 -11.94 16 10 C 0.07 1.19 4.58 -1.70 -0.01 1.18 16 11 C 0.15 2.70 5.55 -61.46 -0.34 2.36 16 12 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 13 C -0.15 -2.57 6.93 -21.21 -0.15 -2.72 16 14 C 0.10 1.96 5.18 -62.57 -0.32 1.64 16 15 H 0.11 2.14 8.06 -51.93 -0.42 1.72 16 16 C 0.17 4.15 4.79 -1.68 -0.01 4.14 16 17 N -0.59 -14.10 3.06 -155.16 -0.48 -14.57 16 18 C -0.23 -6.12 10.38 -15.06 -0.16 -6.28 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -26.61 10.56 55.49 0.59 -26.02 16 22 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 1.46 6.01 -51.93 -0.31 1.15 16 29 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.06 0.88 6.94 -51.93 -0.36 0.52 16 32 H 0.08 1.44 7.17 -51.93 -0.37 1.07 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16 36 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -31.09 310.47 -9.18 -40.26 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.75 Total: 1.67 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.79 Total: 0.05 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.35 Total: -52.53 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.01 Total: 0.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.09 -9.18 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032250824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.212 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds