Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37468 * 123.35219 * 2 1 4 4 C 1.33814 * 115.10307 * 179.76997 * 3 2 1 5 5 S 1.70623 * 110.95032 * 0.48923 * 4 3 2 6 6 C 1.36653 * 123.34951 * 180.29618 * 2 1 3 7 7 C 1.46580 * 125.45779 * 359.96254 * 6 2 1 8 8 O 1.21698 * 120.00287 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99908 * 179.97438 * 7 6 2 10 10 C 1.47872 * 126.94236 * 359.68478 * 9 7 6 11 11 C 1.55964 * 105.13140 * 180.63483 * 10 9 7 12 12 H 1.09001 * 116.55565 * 160.09733 * 11 10 9 13 13 C 1.58974 * 98.69034 * 34.63779 * 11 10 9 14 14 C 1.49286 * 126.94817 * 180.02562 * 9 7 6 15 15 H 1.09001 * 116.14986 * 16.68128 * 14 9 7 16 16 C 1.56014 * 104.09480 * 247.53597 * 14 9 7 17 17 N 1.47870 * 105.10652 * 288.76833 * 16 14 9 18 18 C 1.36939 * 126.94384 * 182.02539 * 17 16 14 19 19 H 1.07995 * 119.99392 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99912 * 359.96741 * 18 17 16 21 21 N 1.31613 * 120.00031 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99549 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47093 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47082 * 120.00074 * 22 20 18 25 25 H 1.48502 * 109.47206 * 239.99901 * 22 20 18 26 26 H 1.09001 * 109.46953 * 269.70276 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.69873 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.70504 * 1 2 3 29 29 H 1.08007 * 122.44910 * 359.97438 * 3 2 1 30 30 H 1.07997 * 124.52829 * 180.23616 * 4 3 2 31 31 H 1.09006 * 110.31520 * 300.92767 * 10 9 7 32 32 H 1.08993 * 110.31742 * 63.11662 * 10 9 7 33 33 H 1.09000 * 112.08090 * 190.73663 * 13 11 10 34 34 H 1.09007 * 113.30258 * 62.75609 * 13 11 10 35 35 H 1.08999 * 110.31324 * 47.67277 * 16 14 9 36 36 H 1.08998 * 110.31914 * 169.75280 * 16 14 9 37 37 H 0.97008 * 119.99768 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9563 0.0049 5 16 3.9623 -0.7082 -0.0038 6 6 2.2583 -1.1415 -0.0059 7 6 1.7284 -2.5081 -0.0122 8 8 0.5258 -2.6945 -0.0129 9 7 2.5730 -3.5583 -0.0182 10 6 4.0510 -3.5102 -0.0259 11 6 4.5068 -5.0016 -0.0473 12 1 5.5241 -5.1954 -0.3874 13 6 3.3355 -5.5980 -0.9415 14 6 2.2057 -5.0053 -0.0256 15 1 1.1789 -5.2388 -0.3071 16 6 2.6735 -5.5231 1.3698 17 7 4.1506 -5.5350 1.3011 18 6 5.0166 -5.9516 2.2767 19 1 6.0822 -5.9115 2.1057 20 6 4.5247 -6.4251 3.4853 21 7 3.2261 -6.4742 3.6934 22 14 5.7062 -6.9927 4.8162 23 1 7.1032 -6.8366 4.3375 24 1 5.5073 -6.1717 6.0376 25 1 5.4472 -8.4205 5.1320 26 1 -0.3633 -0.0053 1.0277 27 1 -0.3634 0.8927 -0.5091 28 1 -0.3633 -0.8873 -0.5184 29 1 1.8201 2.1334 -0.0004 30 1 4.3206 1.7490 0.0092 31 1 4.4075 -2.9714 -0.9039 32 1 4.4189 -3.0373 0.8846 33 1 3.3374 -6.6879 -0.9454 34 1 3.3104 -5.1856 -1.9502 35 1 2.3367 -4.8479 2.1564 36 1 2.2933 -6.5292 1.5471 37 1 2.8824 -6.8048 4.5381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032250824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = 39.087742 kcal Electronic energy + Delta-G solvation = -21559.071263 eV Core-core repulsion = 18429.104140 eV Total energy + Delta-G solvation = -3129.967123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60823 -39.91080 -38.35203 -35.51356 -33.42800 -31.88166 -30.92812 -30.31027 -28.84645 -27.02401 -25.43927 -24.33457 -22.92684 -21.55203 -20.72489 -19.50250 -19.16976 -18.35574 -17.35156 -17.07589 -16.55109 -16.33005 -15.84528 -15.44983 -15.08781 -14.85573 -14.38493 -14.17752 -13.80215 -13.58009 -13.54126 -13.22410 -13.16435 -13.00751 -12.86825 -12.75361 -12.66490 -12.32425 -12.16494 -12.04364 -11.93510 -11.59382 -11.53158 -10.96759 -10.73514 -9.90888 -9.58506 -9.27247 -8.93595 -7.85661 -5.22065 -0.43625 0.57355 1.04380 1.42171 1.47291 1.47773 1.58160 1.89121 2.17554 2.47752 3.28747 3.36161 3.56806 3.79315 3.83600 3.99011 4.00722 4.16478 4.27041 4.40032 4.45029 4.60764 4.66378 4.76492 4.79555 4.84517 4.99098 5.02871 5.08493 5.11444 5.21397 5.39197 5.43717 5.52609 5.54713 5.64661 6.07834 6.55797 7.01313 7.06314 7.69276 8.39516 9.25942 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.005091 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.164997 B = 5498.778878 C = 5811.265512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.032 4.032 3 C -0.158 4.158 4 C -0.232 4.232 5 S 0.233 5.767 6 C -0.310 4.310 7 C 0.593 3.407 8 O -0.578 6.578 9 N -0.608 5.608 10 C 0.078 3.922 11 C 0.142 3.858 12 H 0.142 0.858 13 C -0.130 4.130 14 C 0.102 3.898 15 H 0.115 0.885 16 C 0.188 3.812 17 N -0.613 5.613 18 C -0.229 4.229 19 H 0.099 0.901 20 C -0.071 4.071 21 N -0.958 5.958 22 Si 0.977 3.023 23 H -0.256 1.256 24 H -0.301 1.301 25 H -0.296 1.296 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.170 0.830 30 H 0.200 0.800 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.105 0.895 35 H -0.006 1.006 36 H 0.022 0.978 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 13.825 -12.154 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.048 4.048 3 C -0.189 4.189 4 C -0.369 4.369 5 S 0.503 5.497 6 C -0.429 4.429 7 C 0.384 3.616 8 O -0.461 6.461 9 N -0.340 5.340 10 C -0.047 4.047 11 C 0.035 3.965 12 H 0.160 0.840 13 C -0.169 4.169 14 C -0.001 4.001 15 H 0.133 0.867 16 C 0.062 3.938 17 N -0.337 5.337 18 C -0.358 4.358 19 H 0.117 0.883 20 C -0.264 4.264 21 N -0.608 5.608 22 Si 0.806 3.194 23 H -0.179 1.179 24 H -0.229 1.229 25 H -0.223 1.223 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.187 0.813 30 H 0.217 0.783 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.012 0.988 36 H 0.040 0.960 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.105 12.894 -11.910 18.027 hybrid contribution -1.383 0.338 1.537 2.096 sum 2.722 13.232 -10.373 17.032 Atomic orbital electron populations 1.20679 0.88827 1.03793 1.02683 1.19841 0.98276 0.90997 0.95732 1.20084 0.92766 0.99665 1.06358 1.26002 1.01216 1.03504 1.06212 1.83343 1.01968 0.97451 1.66968 1.24389 0.99544 0.96314 1.22675 1.17005 0.85148 0.83331 0.76144 1.90695 1.15414 1.85811 1.54229 1.49136 1.07895 1.05932 1.71078 1.23344 0.78664 1.01213 1.01491 1.23820 0.98828 0.88970 0.84861 0.84048 1.24416 0.93932 1.00982 0.97593 1.24208 0.99831 0.78810 0.97208 0.86732 1.21518 0.84299 0.96615 0.91407 1.45446 1.01514 1.73801 1.12910 1.19602 0.89704 1.33672 0.92793 0.88298 1.25682 0.97383 1.02728 1.00571 1.70173 1.12499 1.53541 1.24553 0.85016 0.78966 0.76719 0.78682 1.17944 1.22892 1.22349 0.91363 0.88816 0.91512 0.81311 0.78279 0.88264 0.92380 0.89590 0.87703 0.98750 0.96001 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.73 9.55 71.24 0.68 -2.05 16 2 C -0.03 -0.91 5.90 -20.42 -0.12 -1.03 16 3 C -0.16 -3.35 9.97 21.08 0.21 -3.14 16 4 C -0.23 -4.45 10.92 66.81 0.73 -3.72 16 5 S 0.23 5.71 18.68 -56.49 -1.06 4.65 16 6 C -0.31 -10.13 6.39 24.08 0.15 -9.98 16 7 C 0.59 23.66 7.85 86.42 0.68 24.34 16 8 O -0.58 -26.09 14.59 -4.34 -0.06 -26.15 16 9 N -0.61 -23.28 2.94 -773.25 -2.27 -25.55 16 10 C 0.08 2.57 4.58 87.14 0.40 2.97 16 11 C 0.14 4.90 5.55 47.62 0.26 5.16 16 12 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 13 C -0.13 -4.06 6.93 34.17 0.24 -3.83 16 14 C 0.10 4.06 5.18 46.92 0.24 4.30 16 15 H 0.11 4.49 8.06 -2.39 -0.02 4.47 16 16 C 0.19 9.50 4.79 87.16 0.42 9.91 16 17 N -0.61 -29.38 3.06 -644.81 -1.98 -31.35 16 18 C -0.23 -12.04 10.38 84.03 0.87 -11.16 16 19 H 0.10 4.75 7.83 -2.91 -0.02 4.73 16 20 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 21 N -0.96 -58.74 10.56 21.65 0.23 -58.51 16 22 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 2.17 6.01 -2.39 -0.01 2.15 16 29 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.10 2.53 6.94 -2.38 -0.02 2.51 16 32 H 0.06 2.15 7.17 -2.39 -0.02 2.13 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 35 H -0.01 -0.35 7.68 -2.39 -0.02 -0.36 16 36 H 0.02 1.24 7.46 -2.39 -0.02 1.22 16 37 H 0.24 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -72.95 310.47 3.20 -69.75 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.08 Total: 11.80 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 5.23 Total: 8.26 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -4.02 Total: -115.42 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 5.71 SS G_CDS: -1.06 Total: 4.65 kcal Total: -72.95 3.20 -69.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032250824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.839 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds