Wall clock time and date at job start Tue Mar 31 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48503 * 109.46943 * 274.98588 * 3 2 1 5 5 H 1.48501 * 109.46843 * 34.98412 * 3 2 1 6 6 H 1.48495 * 109.46977 * 154.98523 * 3 2 1 7 7 C 1.38807 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00258 * 186.42796 * 7 2 1 9 9 N 1.36936 * 120.00180 * 6.42271 * 7 2 1 10 10 C 1.47872 * 126.94402 * 353.70157 * 9 7 2 11 11 C 1.56014 * 105.10436 * 181.97986 * 10 9 7 12 12 H 1.09004 * 116.89558 * 159.20889 * 11 10 9 13 13 C 1.57085 * 99.60681 * 32.80768 * 11 10 9 14 14 C 1.49290 * 126.94481 * 173.67852 * 9 7 2 15 15 H 1.08998 * 116.15722 * 16.72357 * 14 9 7 16 16 C 1.56004 * 104.31761 * 246.63586 * 14 9 7 17 17 N 1.47870 * 105.11499 * 289.11297 * 16 14 9 18 18 C 1.34772 * 126.94463 * 181.86995 * 17 16 14 19 19 O 1.21278 * 120.00150 * 179.68636 * 18 17 16 20 20 C 1.50700 * 119.99832 * 359.69480 * 18 17 16 21 21 C 1.50707 * 109.46933 * 179.97438 * 20 18 17 22 22 C 1.33385 * 125.20293 * 89.99760 * 21 20 18 23 23 C 1.38425 * 114.91853 * 180.02562 * 22 21 20 24 24 C 1.33394 * 114.92336 * 359.97438 * 23 22 21 25 25 S 1.75885 * 125.19810 * 270.03579 * 21 20 18 26 26 H 0.97009 * 119.99947 * 359.97438 * 1 2 3 27 27 H 1.09004 * 110.30905 * 63.07525 * 10 9 7 28 28 H 1.08993 * 110.31478 * 300.89037 * 10 9 7 29 29 H 1.08999 * 112.36888 * 64.27215 * 13 11 10 30 30 H 1.09000 * 112.36684 * 191.71366 * 13 11 10 31 31 H 1.08994 * 110.41512 * 170.14367 * 16 14 9 32 32 H 1.09005 * 110.19908 * 47.96903 * 16 14 9 33 33 H 1.08996 * 109.47503 * 59.99433 * 20 18 17 34 34 H 1.09009 * 109.47016 * 299.99024 * 20 18 17 35 35 H 1.07994 * 122.54414 * 0.05542 * 22 21 20 36 36 H 1.08002 * 122.53902 * 180.02562 * 23 22 21 37 37 H 1.07998 * 125.20730 * 179.73626 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0851 -1.2052 0.1042 9 7 1.3320 -2.3842 -0.1337 10 6 -0.1349 -2.5696 -0.1568 11 6 -0.3482 -4.1104 -0.2769 12 1 -1.3179 -4.4996 0.0333 13 6 0.9005 -4.6119 0.5335 14 6 1.9241 -3.7463 -0.2855 15 1 2.9744 -3.8468 -0.0121 16 6 1.5285 -4.1801 -1.7308 17 7 0.0718 -4.4277 -1.6740 18 6 -0.7165 -4.8584 -2.6788 19 8 -1.9028 -5.0253 -2.4900 20 6 -0.1237 -5.1326 -4.0369 21 6 -1.2083 -5.5996 -4.9733 22 6 -1.9538 -4.8056 -5.7434 23 6 -2.8907 -5.4616 -6.5230 24 6 -2.9058 -6.7885 -6.3864 25 16 -1.6852 -7.2749 -5.2172 26 1 -0.4850 0.8401 0.0004 27 1 -0.5672 -2.0594 -1.0176 28 1 -0.5780 -2.1971 0.7668 29 1 0.8579 -4.3211 1.5831 30 1 1.0715 -5.6815 0.4122 31 1 2.0566 -5.0910 -2.0123 32 1 1.7491 -3.3800 -2.4376 33 1 0.6394 -5.9061 -3.9508 34 1 0.3263 -4.2200 -4.4280 35 1 -1.8350 -3.7323 -5.7579 36 1 -3.5585 -4.9389 -7.1918 37 1 -3.5696 -7.4608 -6.9097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032252973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:06 Heat of formation + Delta-G solvation = 41.154033 kcal Electronic energy + Delta-G solvation = -21097.258461 eV Core-core repulsion = 17967.380939 eV Total energy + Delta-G solvation = -3129.877522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58910 -39.66206 -38.38138 -35.45029 -33.68666 -32.75289 -30.70630 -30.23308 -28.02255 -26.96502 -25.27889 -24.19672 -22.19374 -21.41210 -20.25657 -19.97096 -18.87112 -18.12405 -17.83991 -17.31476 -16.53901 -16.42385 -16.11713 -15.69659 -14.98027 -14.86573 -14.05027 -13.92937 -13.70168 -13.61044 -13.45365 -13.39896 -13.18249 -13.11260 -12.82102 -12.72686 -12.48346 -12.31736 -12.12329 -12.02787 -11.85242 -11.68798 -11.53582 -10.99590 -10.70919 -9.58649 -9.52481 -9.34296 -8.89680 -7.85690 -5.20610 0.04981 0.72911 1.08894 1.47169 1.48277 1.57272 1.63944 1.77157 2.12514 2.48678 3.32336 3.39010 3.60465 3.70003 3.88673 3.91283 4.05457 4.16951 4.22517 4.24874 4.46401 4.62388 4.65145 4.71292 4.74997 4.86081 4.95739 5.02744 5.15211 5.20117 5.25727 5.37801 5.45560 5.55500 5.57424 5.65483 6.10099 6.67861 7.02704 7.17556 7.71284 8.42308 9.26035 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.004015 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.974010 B = 6971.534181 C = 7529.450496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.260 1.260 7 C -0.230 4.230 8 H 0.097 0.903 9 N -0.617 5.617 10 C 0.188 3.812 11 C 0.100 3.900 12 H 0.110 0.890 13 C -0.130 4.130 14 C 0.135 3.865 15 H 0.137 0.863 16 C 0.089 3.911 17 N -0.610 5.610 18 C 0.522 3.478 19 O -0.586 6.586 20 C -0.057 4.057 21 C -0.172 4.172 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.212 4.212 25 S 0.102 5.898 26 H 0.243 0.757 27 H -0.001 1.001 28 H 0.011 0.989 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -15.689 -10.175 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.219 1.219 5 H -0.230 1.230 6 H -0.184 1.184 7 C -0.359 4.359 8 H 0.115 0.885 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.003 4.003 12 H 0.128 0.872 13 C -0.170 4.170 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.035 4.035 17 N -0.343 5.343 18 C 0.312 3.688 19 O -0.466 6.466 20 C -0.099 4.099 21 C -0.290 4.290 22 C -0.177 4.177 23 C -0.175 4.175 24 C -0.347 4.347 25 S 0.366 5.634 26 H 0.052 0.948 27 H 0.018 0.982 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.177 0.823 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.122 -16.945 -9.557 19.569 hybrid contribution -0.788 3.028 -0.411 3.156 sum 1.333 -13.916 -9.968 17.170 Atomic orbital electron populations 1.70181 1.06717 1.25120 1.58564 1.25669 0.96313 1.01188 1.03070 0.85102 0.78130 0.79431 0.76961 1.21921 1.23027 1.18394 1.19549 0.91838 0.83199 1.41286 0.88534 1.45504 1.01357 1.02317 1.84997 1.21496 0.85127 0.90263 0.96946 1.24124 0.99261 0.95350 0.81575 0.87235 1.24084 0.93919 1.00233 0.98722 1.23607 0.98218 0.83420 0.91919 0.84526 1.23243 0.78975 1.00944 1.00292 1.49300 1.10445 1.64138 1.10455 1.20678 0.85821 0.76315 0.86018 1.90661 1.17067 1.55138 1.83779 1.20132 0.96181 1.04915 0.88640 1.23997 1.04265 0.97080 1.03665 1.20352 0.97337 1.01217 0.98758 1.20361 1.00787 0.94050 1.02264 1.25939 1.04823 0.99575 1.04407 1.83994 1.33040 1.06279 1.40114 0.94776 0.98247 0.97080 0.90279 0.87805 0.87557 0.92546 0.85210 0.86319 0.84785 0.82350 0.79211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.37 10.61 21.65 0.23 -58.14 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.97 44.88 29.56 68.60 2.03 46.91 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.23 -12.02 10.36 84.03 0.87 -11.15 16 8 H 0.10 4.63 7.84 -2.91 -0.02 4.61 16 9 N -0.62 -29.15 3.03 -648.58 -1.96 -31.12 16 10 C 0.19 9.36 4.77 87.16 0.42 9.78 16 11 C 0.10 3.86 5.24 46.93 0.25 4.11 16 12 H 0.11 4.26 8.06 -2.39 -0.02 4.24 16 13 C -0.13 -3.98 6.80 33.47 0.23 -3.75 16 14 C 0.13 4.45 5.52 46.93 0.26 4.71 16 15 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 16 C 0.09 2.64 6.01 87.16 0.52 3.17 16 17 N -0.61 -21.34 2.95 -768.36 -2.26 -23.61 16 18 C 0.52 18.50 7.89 87.66 0.69 19.20 16 19 O -0.59 -25.42 16.38 -3.02 -0.05 -25.47 16 20 C -0.06 -1.50 5.48 29.10 0.16 -1.34 16 21 C -0.17 -4.69 5.00 24.59 0.12 -4.57 16 22 C -0.15 -3.95 10.05 21.22 0.21 -3.73 16 23 C -0.14 -3.27 10.18 21.22 0.22 -3.05 16 24 C -0.21 -4.36 11.23 66.72 0.75 -3.62 16 25 S 0.10 2.38 23.33 -56.49 -1.32 1.07 16 26 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 27 H 0.00 -0.04 7.53 -2.39 -0.02 -0.06 16 28 H 0.01 0.63 7.64 -2.39 -0.02 0.61 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 35 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.34 321.74 2.89 -70.45 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.07 Total: 13.58 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.16 Total: 6.33 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -4.00 Total: -112.86 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.32 Total: 1.07 kcal Total: -73.34 2.89 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032252973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.601 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds