Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33818 * 124.52047 * 2 1 4 4 C 1.37476 * 115.09663 * 179.74906 * 3 2 1 5 5 C 1.36647 * 113.29758 * 0.49721 * 4 3 2 6 6 C 1.46585 * 125.45748 * 179.80456 * 5 4 3 7 7 O 1.21703 * 119.99695 * 359.71164 * 6 5 4 8 8 N 1.34774 * 119.99667 * 179.71800 * 6 5 4 9 9 C 1.48040 * 126.96855 * 0.03822 * 8 6 5 10 10 C 1.56023 * 105.14305 * 181.92518 * 9 8 6 11 11 H 1.08999 * 116.89185 * 159.26762 * 10 9 8 12 12 C 1.57084 * 99.60632 * 32.86522 * 10 9 8 13 13 C 1.49295 * 126.93921 * 180.02562 * 8 6 5 14 14 H 1.08998 * 116.79187 * 16.29167 * 13 8 6 15 15 C 1.56027 * 104.08833 * 246.68750 * 13 8 6 16 16 N 1.47865 * 105.19053 * 288.81697 * 15 13 8 17 17 C 1.36944 * 126.94659 * 181.97228 * 16 15 13 18 18 H 1.07990 * 120.00392 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99334 * 359.97438 * 17 16 15 20 20 N 1.31614 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99548 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47192 * 60.00307 * 21 19 17 23 23 H 1.48501 * 109.46926 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47211 * 299.99812 * 21 19 17 25 25 S 1.70614 * 124.52056 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47004 * 299.99837 * 1 2 3 28 28 H 1.09005 * 109.46861 * 60.00194 * 1 2 3 29 29 H 1.07999 * 122.44992 * 359.97438 * 3 2 1 30 30 H 1.07998 * 123.34657 * 180.30036 * 4 3 2 31 31 H 1.08995 * 110.24614 * 63.03037 * 9 8 6 32 32 H 1.09004 * 110.34314 * 300.86885 * 9 8 6 33 33 H 1.08990 * 112.37302 * 64.27319 * 12 10 9 34 34 H 1.09005 * 112.36310 * 191.62982 * 12 10 9 35 35 H 1.09002 * 110.31597 * 169.85956 * 15 13 8 36 36 H 1.09004 * 110.31570 * 47.77489 * 15 13 8 37 37 H 0.96997 * 120.00028 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0055 5 6 3.9493 -0.4491 -0.0010 6 6 5.3124 -0.9883 -0.0015 7 8 6.2659 -0.2320 -0.0011 8 7 5.5096 -2.3215 -0.0024 9 6 4.4698 -3.3753 -0.0038 10 6 5.2550 -4.7227 0.0462 11 1 4.7093 -5.5985 0.3971 12 6 6.4901 -4.2746 0.9072 13 6 6.8213 -3.0345 -0.0025 14 1 7.6989 -2.4488 0.2712 15 6 6.8695 -3.7410 -1.3928 16 7 5.8756 -4.8324 -1.3074 17 6 5.5836 -5.7573 -2.2742 18 1 4.8321 -6.5109 -2.0912 19 6 6.2537 -5.7260 -3.4895 20 7 7.1699 -4.8078 -3.7124 21 14 5.8559 -6.9880 -4.8081 22 1 4.4240 -6.8757 -5.1850 23 1 6.7034 -6.7403 -6.0021 24 1 6.1247 -8.3517 -4.2852 25 16 2.4740 -1.4057 -0.0006 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8429 2.0965 -0.0004 30 1 4.3550 1.6703 0.0109 31 1 3.8753 -3.3173 -0.9155 32 1 3.8299 -3.2774 0.8732 33 1 6.2069 -3.9827 1.9184 34 1 7.2881 -5.0171 0.9054 35 1 7.8639 -4.1482 -1.5761 36 1 6.5963 -3.0412 -2.1826 37 1 7.6383 -4.7862 -4.5615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032254168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = 56.241423 kcal Electronic energy + Delta-G solvation = -21332.319252 eV Core-core repulsion = 18203.095968 eV Total energy + Delta-G solvation = -3129.223284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08708 -38.38379 -37.14154 -33.67751 -32.18019 -31.41476 -29.23874 -28.62091 -27.02023 -25.26358 -23.94288 -23.11090 -21.54520 -19.96049 -19.32691 -18.17180 -17.89625 -16.63082 -15.88473 -15.67099 -15.30459 -14.77998 -14.27048 -14.02089 -13.84082 -13.41746 -13.22395 -13.11430 -12.40518 -12.30653 -12.05593 -11.97157 -11.79662 -11.63748 -11.35923 -11.05591 -11.01583 -10.87503 -10.63596 -10.54325 -10.23173 -10.11249 -9.67630 -9.62729 -8.73319 -8.60716 -8.48435 -8.00464 -6.96418 -5.78924 -3.14046 0.65402 1.60416 2.02886 2.50228 3.30100 3.36506 3.40566 3.42850 3.56556 4.39582 4.72398 4.79546 5.08746 5.10908 5.13174 5.32221 5.33786 5.36737 5.52233 5.57469 5.58807 5.73673 5.77325 5.82396 6.01222 6.08864 6.18311 6.27013 6.35818 6.44249 6.46910 6.54036 6.64960 7.39215 7.46088 7.69569 7.99478 8.07430 8.51238 9.07337 9.68338 10.36772 11.33044 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.005089 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.664072 B = 5500.693554 C = 6118.596946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.225 4.225 3 C -0.158 4.158 4 C -0.063 4.063 5 C -0.255 4.255 6 C 0.600 3.400 7 O -0.546 6.546 8 N -0.602 5.602 9 C 0.072 3.928 10 C 0.146 3.854 11 H 0.110 0.890 12 C -0.152 4.152 13 C 0.100 3.900 14 H 0.117 0.883 15 C 0.173 3.827 16 N -0.596 5.596 17 C -0.235 4.235 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 S 0.228 5.772 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 6.420 10.125 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.344 4.344 3 C -0.189 4.189 4 C -0.096 4.096 5 C -0.375 4.375 6 C 0.389 3.611 7 O -0.427 6.427 8 N -0.334 5.334 9 C -0.055 4.055 10 C 0.037 3.963 11 H 0.128 0.872 12 C -0.191 4.191 13 C -0.002 4.002 14 H 0.135 0.865 15 C 0.048 3.952 16 N -0.320 5.320 17 C -0.363 4.363 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.565 5.565 21 Si 0.743 3.257 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 S 0.497 5.503 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.743 5.279 9.819 15.482 hybrid contribution -0.013 1.139 -0.914 1.460 sum -10.757 6.419 8.906 15.369 Atomic orbital electron populations 1.20325 0.87880 1.02891 1.02885 1.24606 1.01718 0.99706 1.08406 1.19840 0.92625 0.99335 1.07074 1.20658 0.96046 0.95119 0.97825 1.24655 0.97079 0.97892 1.17904 1.16537 0.86649 0.80946 0.77008 1.90783 1.42019 1.57273 1.52639 1.49089 1.09674 1.03760 1.70904 1.23491 0.90935 0.90474 1.00598 1.23139 0.92508 0.92998 0.87675 0.87230 1.24224 1.00246 0.97648 0.97016 1.24404 0.85598 0.90768 0.99420 0.86537 1.21954 0.94133 0.89038 0.90107 1.45255 1.42647 1.33358 1.10723 1.19001 1.18140 1.06520 0.92595 0.90108 1.24825 0.98576 0.98778 0.97907 1.69901 1.27225 1.35004 1.24349 0.86193 0.77559 0.80706 0.81217 1.21131 1.21602 1.21060 1.83555 0.93705 1.05945 1.67093 0.91432 0.90679 0.90612 0.84497 0.83326 0.90345 0.92301 0.91541 0.89488 0.92373 0.93377 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.33 36.01 0.37 -0.32 16 2 C -0.23 -2.67 6.28 -35.86 -0.23 -2.90 16 3 C -0.16 -1.95 10.00 -41.41 -0.41 -2.36 16 4 C -0.06 -0.94 10.01 -40.43 -0.40 -1.34 16 5 C -0.25 -4.27 6.40 -36.79 -0.24 -4.50 16 6 C 0.60 11.95 7.86 -12.90 -0.10 11.85 16 7 O -0.55 -12.33 17.20 5.19 0.09 -12.24 16 8 N -0.60 -11.59 2.95 -158.04 -0.47 -12.05 16 9 C 0.07 1.24 4.57 -1.58 -0.01 1.24 16 10 C 0.15 2.67 5.53 -62.54 -0.35 2.32 16 11 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 12 C -0.15 -2.54 6.81 -22.16 -0.15 -2.69 16 13 C 0.10 1.96 5.25 -62.41 -0.33 1.64 16 14 H 0.12 2.20 8.08 -51.93 -0.42 1.78 16 15 C 0.17 4.14 4.76 -1.67 -0.01 4.14 16 16 N -0.60 -14.17 3.02 -156.32 -0.47 -14.64 16 17 C -0.23 -6.16 10.38 -15.05 -0.16 -6.31 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 20 N -0.92 -26.64 10.56 55.49 0.59 -26.05 16 21 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 S 0.23 3.11 18.61 -107.50 -2.00 1.11 16 26 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 31 H 0.08 1.49 7.20 -51.93 -0.37 1.12 16 32 H 0.06 0.85 6.91 -51.93 -0.36 0.50 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.52 7.46 -51.93 -0.39 1.14 16 36 H 0.05 1.34 7.67 -51.93 -0.40 0.94 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -31.67 315.26 -9.50 -41.17 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.86 Total: 0.92 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.10 Total: 0.55 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.35 Total: -52.75 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.00 Total: 1.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.67 -9.50 -41.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032254168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.410 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds