Wall clock time and date at job start Tue Mar 31 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33818 * 124.52047 * 2 1 4 4 C 1.37476 * 115.09663 * 179.74906 * 3 2 1 5 5 C 1.36647 * 113.29758 * 0.49721 * 4 3 2 6 6 C 1.46585 * 125.45748 * 179.80456 * 5 4 3 7 7 O 1.21703 * 119.99695 * 359.71164 * 6 5 4 8 8 N 1.34774 * 119.99667 * 179.71800 * 6 5 4 9 9 C 1.48040 * 126.96855 * 0.03822 * 8 6 5 10 10 C 1.56023 * 105.14305 * 181.92518 * 9 8 6 11 11 H 1.08999 * 116.89185 * 159.26762 * 10 9 8 12 12 C 1.57084 * 99.60632 * 32.86522 * 10 9 8 13 13 C 1.49295 * 126.93921 * 180.02562 * 8 6 5 14 14 H 1.08998 * 116.79187 * 16.29167 * 13 8 6 15 15 C 1.56027 * 104.08833 * 246.68750 * 13 8 6 16 16 N 1.47865 * 105.19053 * 288.81697 * 15 13 8 17 17 C 1.36944 * 126.94659 * 181.97228 * 16 15 13 18 18 H 1.07990 * 120.00392 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99334 * 359.97438 * 17 16 15 20 20 N 1.31614 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99548 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47192 * 60.00307 * 21 19 17 23 23 H 1.48501 * 109.46926 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47211 * 299.99812 * 21 19 17 25 25 S 1.70614 * 124.52056 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47004 * 299.99837 * 1 2 3 28 28 H 1.09005 * 109.46861 * 60.00194 * 1 2 3 29 29 H 1.07999 * 122.44992 * 359.97438 * 3 2 1 30 30 H 1.07998 * 123.34657 * 180.30036 * 4 3 2 31 31 H 1.08995 * 110.24614 * 63.03037 * 9 8 6 32 32 H 1.09004 * 110.34314 * 300.86885 * 9 8 6 33 33 H 1.08990 * 112.37302 * 64.27319 * 12 10 9 34 34 H 1.09005 * 112.36310 * 191.62982 * 12 10 9 35 35 H 1.09002 * 110.31597 * 169.85956 * 15 13 8 36 36 H 1.09004 * 110.31570 * 47.77489 * 15 13 8 37 37 H 0.96997 * 120.00028 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0055 5 6 3.9493 -0.4491 -0.0010 6 6 5.3124 -0.9883 -0.0015 7 8 6.2659 -0.2320 -0.0011 8 7 5.5096 -2.3215 -0.0024 9 6 4.4698 -3.3753 -0.0038 10 6 5.2550 -4.7227 0.0462 11 1 4.7093 -5.5985 0.3971 12 6 6.4901 -4.2746 0.9072 13 6 6.8213 -3.0345 -0.0025 14 1 7.6989 -2.4488 0.2712 15 6 6.8695 -3.7410 -1.3928 16 7 5.8756 -4.8324 -1.3074 17 6 5.5836 -5.7573 -2.2742 18 1 4.8321 -6.5109 -2.0912 19 6 6.2537 -5.7260 -3.4895 20 7 7.1699 -4.8078 -3.7124 21 14 5.8559 -6.9880 -4.8081 22 1 4.4240 -6.8757 -5.1850 23 1 6.7034 -6.7403 -6.0021 24 1 6.1247 -8.3517 -4.2852 25 16 2.4740 -1.4057 -0.0006 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8429 2.0965 -0.0004 30 1 4.3550 1.6703 0.0109 31 1 3.8753 -3.3173 -0.9155 32 1 3.8299 -3.2774 0.8732 33 1 6.2069 -3.9827 1.9184 34 1 7.2881 -5.0171 0.9054 35 1 7.8639 -4.1482 -1.5761 36 1 6.5963 -3.0412 -2.1826 37 1 7.6383 -4.7862 -4.5615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032254168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:29 Heat of formation + Delta-G solvation = 36.986828 kcal Electronic energy + Delta-G solvation = -21333.154194 eV Core-core repulsion = 18203.095968 eV Total energy + Delta-G solvation = -3130.058226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64367 -39.74165 -38.41801 -35.50773 -33.59779 -32.74614 -30.87773 -30.32108 -28.12120 -27.02831 -25.44109 -24.34718 -22.94671 -21.52222 -20.85570 -19.57764 -19.25584 -18.34616 -17.44843 -16.91869 -16.78331 -16.39107 -15.85549 -15.37762 -15.00074 -14.90803 -14.66374 -13.98869 -13.89635 -13.62982 -13.52186 -13.27364 -13.14657 -12.93695 -12.86897 -12.70164 -12.65905 -12.42430 -12.18606 -12.15614 -11.97760 -11.60172 -11.50284 -11.19431 -10.72817 -9.86503 -9.53625 -9.41833 -8.93096 -7.84403 -5.20905 -0.48136 0.50868 0.97147 1.38597 1.47631 1.50628 1.56685 1.84550 2.16915 2.48769 3.29720 3.34687 3.54831 3.77664 3.81368 3.90573 3.99107 4.17486 4.29647 4.40084 4.43822 4.57613 4.67583 4.75117 4.77047 4.83808 4.98246 5.08399 5.09384 5.10079 5.18967 5.22617 5.43247 5.44954 5.51287 5.64488 6.08370 6.50404 6.99720 7.01904 7.70152 8.40231 9.26785 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.005089 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.664072 B = 5500.693554 C = 6118.596946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.203 4.203 3 C -0.168 4.168 4 C -0.056 4.056 5 C -0.305 4.305 6 C 0.593 3.407 7 O -0.589 6.589 8 N -0.607 5.607 9 C 0.080 3.920 10 C 0.142 3.858 11 H 0.144 0.856 12 C -0.128 4.128 13 C 0.100 3.900 14 H 0.117 0.883 15 C 0.187 3.813 16 N -0.615 5.615 17 C -0.232 4.232 18 H 0.099 0.901 19 C -0.070 4.070 20 N -0.958 5.958 21 Si 0.978 3.022 22 H -0.276 1.276 23 H -0.304 1.304 24 H -0.272 1.272 25 S 0.242 5.758 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.145 0.855 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.023 0.977 36 H -0.006 1.006 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 5.912 12.066 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.323 4.323 3 C -0.197 4.197 4 C -0.090 4.090 5 C -0.425 4.425 6 C 0.384 3.616 7 O -0.473 6.473 8 N -0.338 5.338 9 C -0.046 4.046 10 C 0.035 3.965 11 H 0.161 0.839 12 C -0.167 4.167 13 C -0.002 4.002 14 H 0.135 0.865 15 C 0.061 3.939 16 N -0.339 5.339 17 C -0.360 4.360 18 H 0.117 0.883 19 C -0.263 4.263 20 N -0.607 5.607 21 Si 0.806 3.194 22 H -0.202 1.202 23 H -0.231 1.231 24 H -0.197 1.197 25 S 0.510 5.490 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.185 0.815 30 H 0.163 0.837 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.012 0.988 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.278 4.736 11.813 19.127 hybrid contribution 0.939 1.381 -1.481 2.232 sum -13.339 6.116 10.331 17.946 Atomic orbital electron populations 1.20527 0.84927 1.04181 1.04617 1.25100 1.03478 0.98458 1.05294 1.20065 0.91330 1.01043 1.07290 1.20905 0.97484 0.94442 0.96210 1.24462 0.96724 0.99282 1.22022 1.17054 0.87778 0.80767 0.76032 1.90734 1.43767 1.58152 1.54656 1.49156 1.09758 1.04153 1.70756 1.23397 0.90509 0.89167 1.01492 1.23587 0.93284 0.94608 0.85006 0.83854 1.24133 0.99283 0.95500 0.97816 1.24274 0.86534 0.92011 0.97427 0.86498 1.21526 0.92518 0.88485 0.91376 1.45499 1.43012 1.32647 1.12735 1.19529 1.17185 1.06454 0.92878 0.88336 1.25680 0.99191 1.00926 1.00477 1.70157 1.29060 1.37345 1.24174 0.85157 0.77222 0.78869 0.78114 1.20211 1.23104 1.19738 1.83309 0.92196 1.06471 1.66989 0.90454 0.88448 0.89117 0.81504 0.83715 0.92132 0.88442 0.87875 0.89367 0.95904 0.98771 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.33 71.24 0.74 -0.30 16 2 C -0.20 -4.14 6.28 24.68 0.15 -3.99 16 3 C -0.17 -3.67 10.00 21.08 0.21 -3.46 16 4 C -0.06 -1.61 10.01 21.72 0.22 -1.40 16 5 C -0.31 -10.13 6.40 24.08 0.15 -9.97 16 6 C 0.59 24.21 7.86 86.42 0.68 24.89 16 7 O -0.59 -27.85 17.20 -4.36 -0.07 -27.93 16 8 N -0.61 -23.50 2.95 -772.12 -2.28 -25.78 16 9 C 0.08 2.64 4.57 87.13 0.40 3.03 16 10 C 0.14 4.88 5.53 46.93 0.26 5.14 16 11 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 12 C -0.13 -4.03 6.81 33.55 0.23 -3.80 16 13 C 0.10 4.01 5.25 47.02 0.25 4.26 16 14 H 0.12 4.61 8.08 -2.39 -0.02 4.60 16 15 C 0.19 9.48 4.76 87.17 0.41 9.89 16 16 N -0.61 -29.44 3.02 -648.47 -1.96 -31.40 16 17 C -0.23 -12.17 10.38 84.03 0.87 -11.29 16 18 H 0.10 4.71 7.83 -2.92 -0.02 4.68 16 19 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 20 N -0.96 -58.67 10.56 21.65 0.23 -58.44 16 21 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 S 0.24 6.05 18.61 -56.49 -1.05 5.00 16 26 H 0.08 0.85 8.11 -2.39 -0.02 0.83 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.06 2.25 7.20 -2.39 -0.02 2.23 16 32 H 0.10 2.50 6.91 -2.38 -0.02 2.48 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.02 1.29 7.46 -2.39 -0.02 1.27 16 36 H -0.01 -0.36 7.67 -2.39 -0.02 -0.38 16 37 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -73.89 315.26 3.00 -70.89 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.07 Total: 11.13 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.04 Total: 9.55 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.01 Total: -115.62 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.07 Total: -27.93 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.05 Total: 5.00 kcal Total: -73.89 3.00 -70.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032254168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.874 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds