Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32773 * 123.45873 * 2 1 4 4 S 1.75504 * 110.57749 * 180.23033 * 3 2 1 5 5 C 1.70456 * 92.44383 * 359.73924 * 4 3 2 6 6 C 1.36003 * 110.81242 * 0.02562 * 5 4 3 7 7 C 1.47193 * 123.45756 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00109 * 185.40582 * 7 6 5 9 9 N 1.34773 * 120.00051 * 5.40623 * 7 6 5 10 10 C 1.47869 * 126.94381 * 354.66371 * 9 7 6 11 11 C 1.56018 * 105.10796 * 181.96724 * 10 9 7 12 12 H 1.09000 * 116.25649 * 159.68323 * 11 10 9 13 13 C 1.57084 * 99.60490 * 32.80571 * 11 10 9 14 14 C 1.49293 * 126.94960 * 174.62754 * 9 7 6 15 15 H 1.09000 * 116.14537 * 15.87226 * 14 9 7 16 16 C 1.56022 * 104.09109 * 246.73561 * 14 9 7 17 17 N 1.47872 * 105.09857 * 288.76113 * 16 14 9 18 18 C 1.36941 * 126.93975 * 182.02565 * 17 16 14 19 19 H 1.08001 * 119.99844 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99931 * 359.97243 * 18 17 16 21 21 N 1.31608 * 120.00388 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99680 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47131 * 60.00334 * 22 20 18 24 24 H 1.48500 * 109.47231 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47249 * 300.00379 * 22 20 18 26 26 H 1.09000 * 109.47336 * 270.23488 * 1 2 3 27 27 H 1.09008 * 109.47200 * 30.23667 * 1 2 3 28 28 H 1.08996 * 109.46972 * 150.22837 * 1 2 3 29 29 H 1.08000 * 124.71392 * 359.93689 * 3 2 1 30 30 H 1.07997 * 124.59073 * 179.97438 * 5 4 3 31 31 H 1.09000 * 110.31387 * 63.06529 * 10 9 7 32 32 H 1.08999 * 110.32286 * 300.87641 * 10 9 7 33 33 H 1.09004 * 112.36922 * 64.27540 * 13 11 10 34 34 H 1.09006 * 112.37128 * 191.71180 * 13 11 10 35 35 H 1.08990 * 110.31715 * 47.66782 * 16 14 9 36 36 H 1.09005 * 110.31113 * 169.75846 * 16 14 9 37 37 H 0.96999 * 120.00720 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 -0.0066 5 6 3.6411 -0.9599 -0.0015 6 6 2.3033 -1.2048 0.0043 7 6 1.7262 -2.5589 0.0091 8 8 0.5227 -2.7075 -0.0850 9 7 2.5314 -3.6342 0.1179 10 6 4.0100 -3.6396 0.1305 11 6 4.4104 -5.1446 0.2248 12 1 5.4229 -5.3950 -0.0917 13 6 3.2264 -5.7821 -0.5872 14 6 2.1109 -5.0605 0.2507 15 1 1.0746 -5.2815 -0.0050 16 6 2.5667 -5.4586 1.6887 17 7 4.0419 -5.5321 1.6186 18 6 4.8973 -5.8848 2.6282 19 1 5.9627 -5.9013 2.4523 20 6 4.3949 -6.2211 3.8778 21 7 3.0965 -6.2014 4.0921 22 14 5.5616 -6.7029 5.2547 23 1 6.4908 -5.5783 5.5325 24 1 4.7809 -7.0132 6.4793 25 1 6.3408 -7.8996 4.8473 26 1 -0.3634 0.0042 1.0276 27 1 -0.3634 0.8879 -0.5175 28 1 -0.3633 -0.8920 -0.5103 29 1 1.8374 2.1103 -0.0010 30 1 4.4043 -1.7239 -0.0036 31 1 4.3831 -3.0939 0.9971 32 1 4.3981 -3.2018 -0.7892 33 1 3.2259 -5.4723 -1.6323 34 1 3.1879 -6.8665 -0.4823 35 1 2.2594 -4.6987 2.4071 36 1 2.1506 -6.4281 1.9628 37 1 2.7454 -6.4360 4.9654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032337446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = 67.072710 kcal Electronic energy + Delta-G solvation = -21599.394305 eV Core-core repulsion = 18470.640700 eV Total energy + Delta-G solvation = -3128.753604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30747 -38.43843 -36.61587 -33.79730 -32.08899 -30.58532 -29.01269 -28.60819 -27.42138 -25.49852 -24.53503 -22.81385 -21.33255 -19.89701 -19.12386 -18.51656 -17.31501 -17.03274 -16.03319 -15.64504 -15.02229 -14.68877 -14.15774 -13.77390 -13.63127 -13.46280 -13.10395 -12.95362 -12.52273 -12.06006 -11.96864 -11.89748 -11.71456 -11.66512 -11.32733 -11.04825 -10.88650 -10.83595 -10.71030 -10.63479 -10.26191 -10.11810 -9.67250 -9.37934 -8.81941 -8.72748 -8.32459 -7.97854 -6.96507 -5.79822 -3.14879 0.90571 1.63430 1.99087 2.13847 3.34712 3.36361 3.39754 3.42002 3.69807 4.38858 4.76665 4.86244 5.08795 5.14029 5.26090 5.31605 5.45549 5.52617 5.57970 5.60711 5.73161 5.79840 5.82730 5.87631 6.04753 6.07848 6.27155 6.30348 6.37151 6.44177 6.54564 6.64668 6.67810 7.38571 7.45835 7.68640 8.04485 8.07940 8.59887 9.06617 9.67659 10.36301 11.32172 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.004978 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.024344 B = 5623.259874 C = 6057.442869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.049 4.049 3 C -0.250 4.250 4 S 0.158 5.842 5 C -0.219 4.219 6 C -0.145 4.145 7 C 0.590 3.410 8 O -0.549 6.549 9 N -0.599 5.599 10 C 0.075 3.925 11 C 0.140 3.860 12 H 0.108 0.892 13 C -0.150 4.150 14 C 0.100 3.900 15 H 0.116 0.884 16 C 0.173 3.827 17 N -0.596 5.596 18 C -0.235 4.235 19 H 0.080 0.920 20 C -0.004 4.004 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.189 0.811 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 11.039 -10.590 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.060 4.060 3 C -0.384 4.384 4 S 0.425 5.575 5 C -0.356 4.356 6 C -0.163 4.163 7 C 0.378 3.622 8 O -0.430 6.430 9 N -0.331 5.331 10 C -0.051 4.051 11 C 0.031 3.969 12 H 0.126 0.874 13 C -0.190 4.190 14 C -0.003 4.003 15 H 0.134 0.866 16 C 0.048 3.952 17 N -0.320 5.320 18 C -0.363 4.363 19 H 0.098 0.902 20 C -0.201 4.201 21 N -0.565 5.565 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.182 0.818 30 H 0.206 0.794 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.623 11.833 -10.341 15.798 hybrid contribution -0.568 -0.984 0.984 1.503 sum 1.055 10.849 -9.358 14.366 Atomic orbital electron populations 1.20668 0.88844 1.03616 1.02864 1.19880 0.97480 0.89936 0.98747 1.25214 0.96352 1.02343 1.14537 1.82879 1.05998 0.97988 1.70654 1.26627 1.00880 1.02497 1.05628 1.20220 0.92120 0.94435 1.09505 1.17162 0.85575 0.82656 0.76798 1.90680 1.14083 1.85958 1.52280 1.49037 1.07167 1.06662 1.70225 1.23610 0.80142 1.01749 0.99558 1.23219 0.96691 0.89760 0.87242 0.87436 1.24148 0.96918 1.00516 0.97380 1.24384 0.98425 0.78163 0.99289 0.86617 1.21948 0.83588 1.00317 0.89324 1.45234 1.02140 1.79000 1.05658 1.18995 0.88797 1.39533 0.88936 0.90175 1.24820 0.96059 1.01540 0.97692 1.69896 1.10306 1.53681 1.22627 0.86195 0.79585 0.78372 0.81541 1.21150 1.21588 1.21055 0.91149 0.92200 0.88663 0.81779 0.79409 0.90555 0.92456 0.91584 0.89628 0.93445 0.92478 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.61 36.00 0.35 -1.04 16 2 C -0.05 -0.73 6.01 -104.07 -0.63 -1.35 16 3 C -0.25 -3.04 10.91 28.86 0.31 -2.73 16 4 S 0.16 1.82 23.02 -107.50 -2.48 -0.66 16 5 C -0.22 -3.13 9.57 29.93 0.29 -2.84 16 6 C -0.15 -2.42 5.98 -104.63 -0.63 -3.05 16 7 C 0.59 11.44 7.86 -12.63 -0.10 11.34 16 8 O -0.55 -11.74 14.53 5.25 0.08 -11.66 16 9 N -0.60 -11.27 2.95 -158.11 -0.47 -11.74 16 10 C 0.07 1.26 4.30 -1.68 -0.01 1.25 16 11 C 0.14 2.53 5.53 -62.55 -0.35 2.19 16 12 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 13 C -0.15 -2.50 6.81 -22.30 -0.15 -2.66 16 14 C 0.10 1.93 5.25 -62.55 -0.33 1.60 16 15 H 0.12 2.18 8.03 -51.93 -0.42 1.76 16 16 C 0.17 4.13 4.76 -1.67 -0.01 4.12 16 17 N -0.60 -14.10 3.02 -156.34 -0.47 -14.57 16 18 C -0.23 -6.15 10.37 -15.06 -0.16 -6.31 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 20 C 0.00 -0.11 5.49 -17.44 -0.10 -0.21 16 21 N -0.92 -26.63 10.56 55.49 0.59 -26.05 16 22 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.65 8.13 -51.92 -0.42 0.23 16 28 H 0.09 1.51 5.91 -51.93 -0.31 1.20 16 29 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.19 2.54 3.79 -52.49 -0.20 2.34 16 31 H 0.08 1.40 6.97 -51.93 -0.36 1.04 16 32 H 0.06 0.79 6.97 -51.93 -0.36 0.43 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 36 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -31.01 309.12 -9.13 -40.14 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.51 Total: 3.06 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.50 Total: 0.32 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.35 Total: -52.36 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.48 Total: -0.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.01 -9.13 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032337446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.213 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds