Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32773 * 123.45873 * 2 1 4 4 S 1.75504 * 110.57749 * 180.23033 * 3 2 1 5 5 C 1.70456 * 92.44383 * 359.73924 * 4 3 2 6 6 C 1.36003 * 110.81242 * 0.02562 * 5 4 3 7 7 C 1.47193 * 123.45756 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00109 * 185.40582 * 7 6 5 9 9 N 1.34773 * 120.00051 * 5.40623 * 7 6 5 10 10 C 1.47869 * 126.94381 * 354.66371 * 9 7 6 11 11 C 1.56018 * 105.10796 * 181.96724 * 10 9 7 12 12 H 1.09000 * 116.25649 * 159.68323 * 11 10 9 13 13 C 1.57084 * 99.60490 * 32.80571 * 11 10 9 14 14 C 1.49293 * 126.94960 * 174.62754 * 9 7 6 15 15 H 1.09000 * 116.14537 * 15.87226 * 14 9 7 16 16 C 1.56022 * 104.09109 * 246.73561 * 14 9 7 17 17 N 1.47872 * 105.09857 * 288.76113 * 16 14 9 18 18 C 1.36941 * 126.93975 * 182.02565 * 17 16 14 19 19 H 1.08001 * 119.99844 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99931 * 359.97243 * 18 17 16 21 21 N 1.31608 * 120.00388 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99680 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47131 * 60.00334 * 22 20 18 24 24 H 1.48500 * 109.47231 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47249 * 300.00379 * 22 20 18 26 26 H 1.09000 * 109.47336 * 270.23488 * 1 2 3 27 27 H 1.09008 * 109.47200 * 30.23667 * 1 2 3 28 28 H 1.08996 * 109.46972 * 150.22837 * 1 2 3 29 29 H 1.08000 * 124.71392 * 359.93689 * 3 2 1 30 30 H 1.07997 * 124.59073 * 179.97438 * 5 4 3 31 31 H 1.09000 * 110.31387 * 63.06529 * 10 9 7 32 32 H 1.08999 * 110.32286 * 300.87641 * 10 9 7 33 33 H 1.09004 * 112.36922 * 64.27540 * 13 11 10 34 34 H 1.09006 * 112.37128 * 191.71180 * 13 11 10 35 35 H 1.08990 * 110.31715 * 47.66782 * 16 14 9 36 36 H 1.09005 * 110.31113 * 169.75846 * 16 14 9 37 37 H 0.96999 * 120.00720 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 -0.0066 5 6 3.6411 -0.9599 -0.0015 6 6 2.3033 -1.2048 0.0043 7 6 1.7262 -2.5589 0.0091 8 8 0.5227 -2.7075 -0.0850 9 7 2.5314 -3.6342 0.1179 10 6 4.0100 -3.6396 0.1305 11 6 4.4104 -5.1446 0.2248 12 1 5.4229 -5.3950 -0.0917 13 6 3.2264 -5.7821 -0.5872 14 6 2.1109 -5.0605 0.2507 15 1 1.0746 -5.2815 -0.0050 16 6 2.5667 -5.4586 1.6887 17 7 4.0419 -5.5321 1.6186 18 6 4.8973 -5.8848 2.6282 19 1 5.9627 -5.9013 2.4523 20 6 4.3949 -6.2211 3.8778 21 7 3.0965 -6.2014 4.0921 22 14 5.5616 -6.7029 5.2547 23 1 6.4908 -5.5783 5.5325 24 1 4.7809 -7.0132 6.4793 25 1 6.3408 -7.8996 4.8473 26 1 -0.3634 0.0042 1.0276 27 1 -0.3634 0.8879 -0.5175 28 1 -0.3633 -0.8920 -0.5103 29 1 1.8374 2.1103 -0.0010 30 1 4.4043 -1.7239 -0.0036 31 1 4.3831 -3.0939 0.9971 32 1 4.3981 -3.2018 -0.7892 33 1 3.2259 -5.4723 -1.6323 34 1 3.1879 -6.8665 -0.4823 35 1 2.2594 -4.6987 2.4071 36 1 2.1506 -6.4281 1.9628 37 1 2.7454 -6.4360 4.9654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032337446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = 48.183644 kcal Electronic energy + Delta-G solvation = -21600.213396 eV Core-core repulsion = 18470.640700 eV Total energy + Delta-G solvation = -3129.572695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78880 -39.82413 -37.90254 -35.56614 -33.69615 -32.00373 -30.51821 -30.30432 -28.50424 -27.12425 -26.14279 -24.28909 -22.71659 -21.43457 -20.66723 -19.79303 -18.79253 -18.39818 -17.51777 -17.25330 -16.45676 -16.31411 -15.82250 -15.11989 -15.00272 -14.88661 -14.36964 -14.26395 -13.72319 -13.62742 -13.48162 -13.23656 -13.09950 -13.00049 -12.86741 -12.76190 -12.67115 -12.27404 -12.19400 -12.08166 -11.86652 -11.78932 -11.54605 -10.90483 -10.65623 -9.86606 -9.64470 -9.19107 -8.92103 -7.85102 -5.21306 -0.19793 0.65215 0.96508 0.98221 1.46632 1.49467 1.55616 1.93724 2.33105 2.48067 3.31547 3.35918 3.61937 3.72063 3.86758 3.88088 4.00384 4.17412 4.23468 4.38209 4.48734 4.59302 4.64108 4.72438 4.79873 4.80892 4.87456 4.97780 5.05079 5.11318 5.20479 5.27766 5.43200 5.52104 5.58256 5.64448 6.08376 6.61088 7.01528 7.14068 7.69949 8.40310 9.26054 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.004978 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.024344 B = 5623.259874 C = 6057.442869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.080 4.080 3 C -0.241 4.241 4 S 0.237 5.763 5 C -0.228 4.228 6 C -0.180 4.180 7 C 0.580 3.420 8 O -0.583 6.583 9 N -0.604 5.604 10 C 0.083 3.917 11 C 0.136 3.864 12 H 0.141 0.859 13 C -0.127 4.127 14 C 0.101 3.899 15 H 0.115 0.885 16 C 0.188 3.812 17 N -0.615 5.615 18 C -0.231 4.231 19 H 0.098 0.902 20 C -0.071 4.071 21 N -0.959 5.959 22 Si 0.977 3.023 23 H -0.276 1.276 24 H -0.304 1.304 25 H -0.272 1.272 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.197 0.803 30 H 0.194 0.806 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.084 0.916 35 H -0.006 1.006 36 H 0.020 0.980 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 13.054 -12.582 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.375 4.375 4 S 0.504 5.496 5 C -0.366 4.366 6 C -0.198 4.198 7 C 0.370 3.630 8 O -0.466 6.466 9 N -0.336 5.336 10 C -0.042 4.042 11 C 0.029 3.971 12 H 0.158 0.842 13 C -0.167 4.167 14 C -0.002 4.002 15 H 0.133 0.867 16 C 0.062 3.938 17 N -0.339 5.339 18 C -0.360 4.360 19 H 0.115 0.885 20 C -0.264 4.264 21 N -0.608 5.608 22 Si 0.806 3.194 23 H -0.202 1.202 24 H -0.231 1.231 25 H -0.198 1.198 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.214 0.786 30 H 0.211 0.789 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.013 0.987 36 H 0.038 0.962 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.382 13.868 -12.387 19.104 hybrid contribution -1.345 -1.496 1.559 2.545 sum 3.037 12.372 -10.827 16.719 Atomic orbital electron populations 1.20587 0.88941 1.03665 1.02360 1.19984 0.97889 0.90196 1.00987 1.25640 0.97032 1.03002 1.11873 1.82645 1.04429 0.94589 1.67937 1.26795 1.00052 1.05146 1.04563 1.20176 0.93468 0.93405 1.12783 1.17751 0.85356 0.83874 0.76028 1.90652 1.15509 1.86642 1.53782 1.49113 1.08125 1.06156 1.70207 1.23553 0.78910 1.00686 1.01005 1.23659 0.98776 0.90449 0.84183 0.84186 1.24050 0.94054 1.00034 0.98518 1.24213 0.99486 0.79625 0.96842 0.86741 1.21517 0.84456 0.96728 0.91131 1.45479 1.01695 1.78962 1.07806 1.19519 0.89940 1.37112 0.89432 0.88451 1.25673 0.97319 1.02940 1.00419 1.70152 1.12317 1.56012 1.22288 0.85161 0.77584 0.78476 0.78173 1.20227 1.23083 1.19799 0.92003 0.89183 0.91480 0.78622 0.78887 0.92234 0.88014 0.87981 0.89779 0.98743 0.96199 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 9.61 71.23 0.68 -1.97 16 2 C -0.08 -2.27 6.01 -19.47 -0.12 -2.38 16 3 C -0.24 -5.07 10.91 66.64 0.73 -4.34 16 4 S 0.24 4.52 23.02 -56.49 -1.30 3.22 16 5 C -0.23 -5.97 9.57 67.30 0.64 -5.33 16 6 C -0.18 -5.89 5.98 -19.87 -0.12 -6.01 16 7 C 0.58 22.94 7.86 86.60 0.68 23.62 16 8 O -0.58 -26.10 14.53 -4.13 -0.06 -26.16 16 9 N -0.60 -22.75 2.95 -772.40 -2.28 -25.03 16 10 C 0.08 2.62 4.30 87.16 0.37 2.99 16 11 C 0.14 4.60 5.53 46.93 0.26 4.86 16 12 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 13 C -0.13 -3.99 6.81 33.46 0.23 -3.76 16 14 C 0.10 4.01 5.25 46.93 0.25 4.25 16 15 H 0.11 4.51 8.03 -2.39 -0.02 4.49 16 16 C 0.19 9.46 4.76 87.16 0.42 9.87 16 17 N -0.62 -29.27 3.02 -648.53 -1.96 -31.23 16 18 C -0.23 -12.13 10.37 84.03 0.87 -11.25 16 19 H 0.10 4.66 7.83 -2.91 -0.02 4.63 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 21 N -0.96 -58.66 10.56 21.65 0.23 -58.43 16 22 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.81 8.13 -2.38 -0.02 1.79 16 28 H 0.07 2.22 5.91 -2.39 -0.01 2.20 16 29 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.19 4.67 3.79 -2.91 -0.01 4.66 16 31 H 0.06 2.11 6.97 -2.39 -0.02 2.10 16 32 H 0.10 2.37 6.97 -2.39 -0.02 2.36 16 33 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 35 H -0.01 -0.34 7.68 -2.39 -0.02 -0.36 16 36 H 0.02 1.13 7.46 -2.38 -0.02 1.11 16 37 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -72.65 309.12 3.12 -69.53 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.09 Total: 14.03 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.36 Total: 7.05 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.01 Total: -114.69 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.30 Total: 3.22 kcal Total: -72.65 3.12 -69.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032337446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.715 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds