Wall clock time and date at job start Tue Mar 31 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70452 * 124.58952 * 2 1 4 4 C 1.75504 * 92.44126 * 180.02562 * 3 2 1 5 5 C 1.32770 * 110.57730 * 359.73620 * 4 3 2 6 6 C 1.36004 * 124.59244 * 180.02562 * 2 1 3 7 7 C 1.47195 * 123.45809 * 359.96634 * 6 2 1 8 8 O 1.21635 * 119.99943 * 353.81733 * 7 6 2 9 9 N 1.34778 * 119.99874 * 173.82112 * 7 6 2 10 10 C 1.47868 * 126.94294 * 4.69008 * 9 7 6 11 11 C 1.56021 * 105.10549 * 181.98127 * 10 9 7 12 12 H 1.08995 * 116.25195 * 158.83767 * 11 10 9 13 13 C 1.57090 * 99.60404 * 32.80745 * 11 10 9 14 14 C 1.49283 * 126.94394 * 184.38045 * 9 7 6 15 15 H 1.08998 * 116.15663 * 15.86478 * 14 9 7 16 16 C 1.58430 * 103.70252 * 246.54111 * 14 9 7 17 17 N 1.47864 * 104.83317 * 288.54888 * 16 14 9 18 18 C 1.36941 * 126.94195 * 182.30181 * 17 16 14 19 19 H 1.08005 * 119.99620 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00316 * 359.97438 * 18 17 16 21 21 N 1.31622 * 119.99868 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00203 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47515 * 59.99286 * 22 20 18 24 24 H 1.48496 * 109.47418 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46758 * 299.99512 * 22 20 18 26 26 H 1.08999 * 109.47541 * 269.98095 * 1 2 3 27 27 H 1.09009 * 109.46842 * 29.98128 * 1 2 3 28 28 H 1.09000 * 109.47113 * 149.97846 * 1 2 3 29 29 H 1.08003 * 124.71157 * 180.02562 * 4 3 2 30 30 H 1.07999 * 123.46017 * 180.26357 * 5 4 3 31 31 H 1.09000 * 110.31951 * 300.89041 * 10 9 7 32 32 H 1.09002 * 110.31533 * 63.07518 * 10 9 7 33 33 H 1.09005 * 112.36707 * 64.27620 * 13 11 10 34 34 H 1.08998 * 112.36909 * 191.71296 * 13 11 10 35 35 H 1.08996 * 110.19421 * 169.85147 * 16 14 9 36 36 H 1.09004 * 110.78322 * 47.54083 * 16 14 9 37 37 H 0.96997 * 119.99938 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6943 -0.8314 0.0047 6 6 2.2791 -1.1196 -0.0005 7 6 1.7289 -2.4849 -0.0004 8 8 0.5303 -2.6575 0.1136 9 7 2.5533 -3.5436 -0.1265 10 6 4.0309 -3.5184 -0.1774 11 6 4.4562 -5.0057 -0.3806 12 1 5.4513 -5.1704 -0.7937 13 6 3.2456 -5.5086 -1.2461 14 6 2.1595 -4.9793 -0.2367 15 1 1.1150 -5.1737 -0.4804 16 6 2.7076 -5.6228 1.1033 17 7 4.1768 -5.6470 0.9382 18 6 5.0955 -6.1552 1.8174 19 1 6.1487 -6.1134 1.5821 20 6 4.6731 -6.7231 3.0116 21 7 3.3897 -6.7726 3.2991 22 14 5.9264 -7.4156 4.2112 23 1 6.8545 -6.3368 4.6354 24 1 5.2244 -7.9603 5.4010 25 1 6.6967 -8.5001 3.5510 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.9537 0.8938 -0.0006 30 1 4.4575 -1.5954 0.0095 31 1 4.3705 -2.9098 -1.0155 32 1 4.4353 -3.1337 0.7589 33 1 3.1933 -5.0113 -2.2147 34 1 3.2271 -6.5941 -1.3425 35 1 2.3229 -6.6360 1.2190 36 1 2.4335 -5.0140 1.9650 37 1 3.0945 -7.1698 4.1334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032394540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:31 Heat of formation + Delta-G solvation = 66.610627 kcal Electronic energy + Delta-G solvation = -21584.387640 eV Core-core repulsion = 18455.613999 eV Total energy + Delta-G solvation = -3128.773642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20722 -38.29865 -36.50796 -33.70570 -32.00829 -31.36120 -29.15355 -28.60161 -26.94291 -25.26775 -23.84251 -23.41012 -21.00193 -20.09346 -19.46139 -18.53311 -17.16037 -16.81946 -15.78728 -15.69552 -15.20585 -14.66128 -14.14314 -13.86627 -13.69987 -13.60120 -13.19749 -12.86056 -12.50464 -12.05200 -12.03128 -11.84088 -11.64156 -11.50543 -11.31499 -11.13963 -11.00314 -10.85411 -10.64270 -10.53724 -10.20071 -10.09661 -9.64472 -9.36780 -8.75134 -8.70608 -8.41855 -7.92683 -6.93774 -5.77786 -3.12658 0.89345 1.54757 1.93108 2.17402 3.36719 3.40918 3.43191 3.49199 3.69779 4.40825 4.76107 4.86134 5.05498 5.15628 5.24305 5.33409 5.40246 5.52878 5.59112 5.64239 5.69186 5.73419 5.87249 5.93279 6.05695 6.14119 6.28759 6.30554 6.35931 6.41073 6.51250 6.56992 6.70954 7.41145 7.49514 7.71455 8.07945 8.11673 8.62372 9.08975 9.69835 10.39111 11.34172 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.004657 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.096566 B = 6011.227705 C = 6354.271388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.144 4.144 3 S 0.151 5.849 4 C -0.239 4.239 5 C -0.117 4.117 6 C -0.161 4.161 7 C 0.590 3.410 8 O -0.551 6.551 9 N -0.599 5.599 10 C 0.078 3.922 11 C 0.139 3.861 12 H 0.106 0.894 13 C -0.151 4.151 14 C 0.097 3.903 15 H 0.115 0.885 16 C 0.177 3.823 17 N -0.597 5.597 18 C -0.233 4.233 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 13.232 -9.658 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.264 4.264 3 S 0.416 5.584 4 C -0.373 4.373 5 C -0.146 4.146 6 C -0.178 4.178 7 C 0.379 3.621 8 O -0.433 6.433 9 N -0.331 5.331 10 C -0.047 4.047 11 C 0.030 3.970 12 H 0.124 0.876 13 C -0.191 4.191 14 C -0.006 4.006 15 H 0.133 0.867 16 C 0.051 3.949 17 N -0.321 5.321 18 C -0.361 4.361 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.184 0.816 30 H 0.185 0.815 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.190 14.615 -9.299 17.363 hybrid contribution 1.106 -1.792 0.873 2.280 sum -0.084 12.823 -8.426 15.343 Atomic orbital electron populations 1.20564 0.86913 1.03773 1.03516 1.24441 1.01612 0.96586 1.03745 1.82849 0.95814 1.08138 1.71601 1.25389 1.01789 0.97136 1.12997 1.22159 0.95682 0.96939 0.99795 1.20225 0.92781 0.93850 1.10921 1.17137 0.85323 0.82843 0.76811 1.90694 1.14700 1.85751 1.52108 1.48982 1.07207 1.06531 1.70359 1.23638 0.79975 1.00832 1.00241 1.23199 0.96547 0.89210 0.88010 0.87650 1.24189 0.97159 1.01163 0.96545 1.24893 0.98391 0.78472 0.98815 0.86747 1.22375 0.83022 0.98675 0.90788 1.45203 1.02395 1.68532 1.15966 1.18997 0.88031 1.32073 0.97016 0.90180 1.24822 0.96226 1.01067 0.98069 1.69898 1.12534 1.49333 1.24803 0.86190 0.80064 0.78839 0.80574 1.21162 1.21607 1.21078 0.90296 0.91956 0.88078 0.81645 0.81483 0.92311 0.90625 0.91536 0.89742 0.92676 0.93317 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.52 36.01 0.34 -0.84 16 2 C -0.14 -2.08 6.34 -35.11 -0.22 -2.30 16 3 S 0.15 1.70 22.97 -107.50 -2.47 -0.76 16 4 C -0.24 -2.80 11.12 28.86 0.32 -2.48 16 5 C -0.12 -1.66 8.99 -39.02 -0.35 -2.01 16 6 C -0.16 -2.66 5.97 -104.63 -0.62 -3.29 16 7 C 0.59 11.46 7.85 -12.62 -0.10 11.37 16 8 O -0.55 -11.84 14.51 5.25 0.08 -11.77 16 9 N -0.60 -11.33 2.95 -156.40 -0.46 -11.79 16 10 C 0.08 1.33 4.28 -1.67 -0.01 1.33 16 11 C 0.14 2.55 5.47 -62.55 -0.34 2.20 16 12 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 13 C -0.15 -2.53 6.86 -22.09 -0.15 -2.68 16 14 C 0.10 1.88 5.34 -60.97 -0.33 1.56 16 15 H 0.11 2.16 8.07 -51.93 -0.42 1.74 16 16 C 0.18 4.25 4.88 -0.30 0.00 4.25 16 17 N -0.60 -14.24 3.02 -154.76 -0.47 -14.71 16 18 C -0.23 -6.15 10.37 -15.06 -0.16 -6.31 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 21 N -0.92 -26.81 10.56 55.49 0.59 -26.22 16 22 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.10 1.54 6.10 -51.93 -0.32 1.23 16 29 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.17 2.27 3.90 -52.49 -0.20 2.07 16 31 H 0.06 0.82 6.74 -51.93 -0.35 0.47 16 32 H 0.08 1.41 7.09 -51.93 -0.37 1.04 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 36 H 0.05 1.36 7.67 -51.93 -0.40 0.97 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -31.31 309.31 -9.34 -40.64 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.53 Total: 2.79 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.71 Total: 0.57 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.34 Total: -52.72 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.47 Total: -0.76 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.31 -9.34 -40.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032394540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.255 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds