Wall clock time and date at job start Tue Mar 31 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70452 * 124.58952 * 2 1 4 4 C 1.75504 * 92.44126 * 180.02562 * 3 2 1 5 5 C 1.32770 * 110.57730 * 359.73620 * 4 3 2 6 6 C 1.36004 * 124.59244 * 180.02562 * 2 1 3 7 7 C 1.47195 * 123.45809 * 359.96634 * 6 2 1 8 8 O 1.21635 * 119.99943 * 353.81733 * 7 6 2 9 9 N 1.34778 * 119.99874 * 173.82112 * 7 6 2 10 10 C 1.47868 * 126.94294 * 4.69008 * 9 7 6 11 11 C 1.56021 * 105.10549 * 181.98127 * 10 9 7 12 12 H 1.08995 * 116.25195 * 158.83767 * 11 10 9 13 13 C 1.57090 * 99.60404 * 32.80745 * 11 10 9 14 14 C 1.49283 * 126.94394 * 184.38045 * 9 7 6 15 15 H 1.08998 * 116.15663 * 15.86478 * 14 9 7 16 16 C 1.58430 * 103.70252 * 246.54111 * 14 9 7 17 17 N 1.47864 * 104.83317 * 288.54888 * 16 14 9 18 18 C 1.36941 * 126.94195 * 182.30181 * 17 16 14 19 19 H 1.08005 * 119.99620 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00316 * 359.97438 * 18 17 16 21 21 N 1.31622 * 119.99868 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00203 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47515 * 59.99286 * 22 20 18 24 24 H 1.48496 * 109.47418 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46758 * 299.99512 * 22 20 18 26 26 H 1.08999 * 109.47541 * 269.98095 * 1 2 3 27 27 H 1.09009 * 109.46842 * 29.98128 * 1 2 3 28 28 H 1.09000 * 109.47113 * 149.97846 * 1 2 3 29 29 H 1.08003 * 124.71157 * 180.02562 * 4 3 2 30 30 H 1.07999 * 123.46017 * 180.26357 * 5 4 3 31 31 H 1.09000 * 110.31951 * 300.89041 * 10 9 7 32 32 H 1.09002 * 110.31533 * 63.07518 * 10 9 7 33 33 H 1.09005 * 112.36707 * 64.27620 * 13 11 10 34 34 H 1.08998 * 112.36909 * 191.71296 * 13 11 10 35 35 H 1.08996 * 110.19421 * 169.85147 * 16 14 9 36 36 H 1.09004 * 110.78322 * 47.54083 * 16 14 9 37 37 H 0.96997 * 119.99938 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6943 -0.8314 0.0047 6 6 2.2791 -1.1196 -0.0005 7 6 1.7289 -2.4849 -0.0004 8 8 0.5303 -2.6575 0.1136 9 7 2.5533 -3.5436 -0.1265 10 6 4.0309 -3.5184 -0.1774 11 6 4.4562 -5.0057 -0.3806 12 1 5.4513 -5.1704 -0.7937 13 6 3.2456 -5.5086 -1.2461 14 6 2.1595 -4.9793 -0.2367 15 1 1.1150 -5.1737 -0.4804 16 6 2.7076 -5.6228 1.1033 17 7 4.1768 -5.6470 0.9382 18 6 5.0955 -6.1552 1.8174 19 1 6.1487 -6.1134 1.5821 20 6 4.6731 -6.7231 3.0116 21 7 3.3897 -6.7726 3.2991 22 14 5.9264 -7.4156 4.2112 23 1 6.8545 -6.3368 4.6354 24 1 5.2244 -7.9603 5.4010 25 1 6.6967 -8.5001 3.5510 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.9537 0.8938 -0.0006 30 1 4.4575 -1.5954 0.0095 31 1 4.3705 -2.9098 -1.0155 32 1 4.4353 -3.1337 0.7589 33 1 3.1933 -5.0113 -2.2147 34 1 3.2271 -6.5941 -1.3425 35 1 2.3229 -6.6360 1.2190 36 1 2.4335 -5.0140 1.9650 37 1 3.0945 -7.1698 4.1334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032394540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:31 Heat of formation + Delta-G solvation = 47.479034 kcal Electronic energy + Delta-G solvation = -21585.217248 eV Core-core repulsion = 18455.613999 eV Total energy + Delta-G solvation = -3129.603250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68705 -39.72782 -37.75878 -35.51641 -33.45930 -32.72748 -30.82717 -30.27394 -28.10042 -27.05618 -25.36045 -24.73233 -22.39764 -21.55463 -20.91908 -20.05280 -18.72045 -18.10329 -17.37233 -17.14208 -16.58341 -16.30060 -15.74889 -15.28629 -15.10562 -14.88848 -14.47565 -14.22750 -13.74164 -13.59082 -13.42734 -13.26101 -13.08692 -13.01951 -12.83214 -12.66352 -12.56721 -12.35942 -12.17222 -12.13546 -11.97040 -11.65063 -11.51619 -10.86879 -10.66589 -9.83785 -9.51246 -9.29913 -8.90763 -7.84305 -5.20550 -0.19605 0.57302 0.94344 1.04494 1.46686 1.49807 1.55912 2.06511 2.33063 2.48692 3.32967 3.38901 3.64234 3.75915 3.83128 3.85988 3.95438 4.15804 4.20878 4.37226 4.52699 4.60557 4.63812 4.68984 4.80997 4.87735 4.98628 5.03145 5.10178 5.12578 5.24181 5.25215 5.32224 5.44241 5.55326 5.65204 6.09428 6.64895 7.02398 7.15740 7.70862 8.41741 9.26753 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.004657 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.096566 B = 6011.227705 C = 6354.271388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.163 4.163 3 S 0.229 5.771 4 C -0.229 4.229 5 C -0.138 4.138 6 C -0.194 4.194 7 C 0.580 3.420 8 O -0.587 6.587 9 N -0.604 5.604 10 C 0.088 3.912 11 C 0.134 3.866 12 H 0.138 0.862 13 C -0.127 4.127 14 C 0.100 3.900 15 H 0.115 0.885 16 C 0.189 3.811 17 N -0.616 5.616 18 C -0.231 4.231 19 H 0.098 0.902 20 C -0.072 4.072 21 N -0.959 5.959 22 Si 0.978 3.022 23 H -0.276 1.276 24 H -0.304 1.304 25 H -0.272 1.272 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.200 0.800 30 H 0.169 0.831 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.018 0.982 36 H -0.006 1.006 37 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 15.749 -11.708 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.284 4.284 3 S 0.494 5.506 4 C -0.364 4.364 5 C -0.166 4.166 6 C -0.211 4.211 7 C 0.370 3.630 8 O -0.470 6.470 9 N -0.336 5.336 10 C -0.036 4.036 11 C 0.028 3.972 12 H 0.156 0.844 13 C -0.167 4.167 14 C -0.003 4.003 15 H 0.133 0.867 16 C 0.063 3.937 17 N -0.340 5.340 18 C -0.359 4.359 19 H 0.116 0.884 20 C -0.265 4.265 21 N -0.609 5.609 22 Si 0.807 3.193 23 H -0.202 1.202 24 H -0.231 1.231 25 H -0.198 1.198 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.217 0.783 30 H 0.186 0.814 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.012 0.988 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.249 17.162 -11.405 20.644 hybrid contribution 0.341 -2.421 1.479 2.858 sum 1.589 14.741 -9.925 17.842 Atomic orbital electron populations 1.20537 0.86766 1.04070 1.03315 1.24798 1.02507 0.98090 1.02979 1.82599 0.93929 1.04983 1.69072 1.25847 1.03742 0.96458 1.10326 1.22079 0.94397 0.98194 1.01899 1.20187 0.94449 0.92484 1.14013 1.17761 0.85062 0.84190 0.75959 1.90664 1.16195 1.86511 1.53652 1.49067 1.08148 1.05983 1.70367 1.23554 0.78682 1.00283 1.01034 1.23639 0.98726 0.89312 0.85558 0.84446 1.24096 0.94230 1.01327 0.97003 1.24727 0.99308 0.79287 0.97025 0.86748 1.21949 0.84120 0.95938 0.91702 1.45448 1.01794 1.68781 1.17976 1.19530 0.89260 1.30070 0.97063 0.88444 1.25685 0.97766 1.02663 1.00341 1.70160 1.14668 1.51275 1.24764 0.85147 0.77805 0.78432 0.77930 1.20221 1.23081 1.19767 0.90713 0.88809 0.90664 0.78291 0.81371 0.87968 0.92534 0.87826 0.89858 0.96424 0.98753 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.30 9.52 71.24 0.68 -1.62 16 2 C -0.16 -4.48 6.34 25.17 0.16 -4.32 16 3 S 0.23 4.31 22.97 -56.49 -1.30 3.01 16 4 C -0.23 -4.47 11.12 66.64 0.74 -3.73 16 5 C -0.14 -3.58 8.99 22.67 0.20 -3.38 16 6 C -0.19 -6.27 5.97 -19.87 -0.12 -6.39 16 7 C 0.58 22.99 7.85 86.60 0.68 23.67 16 8 O -0.59 -26.41 14.51 -4.14 -0.06 -26.47 16 9 N -0.60 -22.97 2.95 -766.97 -2.26 -25.23 16 10 C 0.09 2.86 4.28 87.16 0.37 3.24 16 11 C 0.13 4.62 5.47 46.94 0.26 4.88 16 12 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 13 C -0.13 -4.02 6.86 33.60 0.23 -3.79 16 14 C 0.10 3.97 5.34 47.96 0.26 4.23 16 15 H 0.11 4.51 8.07 -2.39 -0.02 4.49 16 16 C 0.19 9.66 4.88 88.06 0.43 10.09 16 17 N -0.62 -29.72 3.02 -643.55 -1.95 -31.67 16 18 C -0.23 -12.22 10.37 84.03 0.87 -11.35 16 19 H 0.10 4.71 7.83 -2.91 -0.02 4.69 16 20 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 21 N -0.96 -59.25 10.56 21.65 0.23 -59.02 16 22 Si 0.98 45.35 29.55 68.60 2.03 47.37 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.07 2.37 6.10 -2.39 -0.01 2.35 16 29 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.17 4.17 3.90 -2.91 -0.01 4.16 16 31 H 0.10 2.49 6.74 -2.39 -0.02 2.47 16 32 H 0.06 2.07 7.09 -2.39 -0.02 2.06 16 33 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.02 1.01 7.46 -2.39 -0.02 0.99 16 36 H -0.01 -0.35 7.67 -2.39 -0.02 -0.37 16 37 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -73.58 309.31 3.01 -70.57 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.09 Total: 13.49 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.23 Total: 7.94 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -3.98 Total: -115.92 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.06 Total: -26.47 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.30 Total: 3.01 kcal Total: -73.58 3.01 -70.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032394540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.051 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds