Wall clock time and date at job start Tue Mar 31 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32772 * 124.71368 * 2 1 4 4 C 1.44422 * 113.08650 * 179.97438 * 3 2 1 5 5 C 1.47192 * 123.46512 * 180.02562 * 4 3 2 6 6 O 1.21640 * 119.99700 * 5.55264 * 5 4 3 7 7 N 1.34773 * 120.00283 * 185.55963 * 5 4 3 8 8 C 1.47869 * 126.94363 * 354.64552 * 7 5 4 9 9 C 1.56018 * 105.10511 * 182.00245 * 8 7 5 10 10 H 1.08995 * 116.24915 * 159.68340 * 9 8 7 11 11 C 1.57079 * 99.60494 * 32.80392 * 9 8 7 12 12 C 1.49287 * 126.94698 * 174.64515 * 7 5 4 13 13 H 1.09002 * 116.15214 * 15.84041 * 12 7 5 14 14 C 1.56027 * 104.09148 * 246.69773 * 12 7 5 15 15 N 1.47866 * 105.10383 * 288.76521 * 14 12 7 16 16 C 1.36928 * 126.94394 * 182.02302 * 15 14 12 17 17 H 1.08006 * 120.00483 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00278 * 359.97438 * 16 15 14 19 19 N 1.31624 * 119.99787 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00460 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47170 * 119.99897 * 20 18 16 23 23 H 1.48500 * 109.47061 * 240.00101 * 20 18 16 24 24 C 1.36015 * 113.07634 * 0.26964 * 4 3 2 25 25 S 1.70451 * 110.81605 * 359.59012 * 24 4 3 26 26 H 1.09005 * 109.47282 * 89.99389 * 1 2 3 27 27 H 1.09000 * 109.47535 * 209.99696 * 1 2 3 28 28 H 1.09002 * 109.47031 * 329.99766 * 1 2 3 29 29 H 1.07998 * 123.45952 * 0.02562 * 3 2 1 30 30 H 1.09002 * 110.31466 * 300.90620 * 8 7 5 31 31 H 1.08997 * 110.31665 * 63.09383 * 8 7 5 32 32 H 1.09003 * 112.36864 * 191.71889 * 11 9 8 33 33 H 1.08999 * 112.37111 * 64.27522 * 11 9 8 34 34 H 1.08997 * 110.31558 * 47.67476 * 14 12 7 35 35 H 1.08999 * 110.31146 * 169.75571 * 14 12 7 36 36 H 0.96999 * 120.00189 * 179.97438 * 19 18 16 37 37 H 1.08001 * 124.59379 * 179.70851 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 0.0006 5 6 4.7201 1.8395 0.0013 6 8 4.4106 3.0114 0.1033 7 7 6.0175 1.4925 -0.1113 8 6 6.5724 0.1220 -0.1331 9 6 8.1182 0.3107 -0.2273 10 1 8.7273 -0.5382 0.0834 11 6 8.2703 1.6416 0.5931 12 6 7.1850 2.4141 -0.2391 13 1 7.0051 3.4567 0.0233 14 6 7.7231 2.1480 -1.6793 15 7 8.3399 0.8056 -1.6182 16 6 8.9846 0.1492 -2.6324 17 1 9.3963 -0.8349 -2.4630 18 6 9.1091 0.7484 -3.8783 19 7 8.6079 1.9479 -4.0847 20 14 9.9892 -0.1467 -5.2616 21 1 10.4577 -1.4695 -4.7760 22 1 9.0546 -0.3403 -6.3993 23 1 11.1542 0.6578 -5.7094 24 6 3.9476 -0.5328 -0.0049 25 16 2.5063 -1.4427 0.0007 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.8615 2.0940 0.0004 30 1 6.3108 -0.4067 0.7835 31 1 6.2038 -0.4217 -1.0029 32 1 9.2624 2.0812 0.4902 33 1 7.9833 1.5202 1.6376 34 1 6.9029 2.1554 -2.3971 35 1 8.4680 2.8966 -1.9492 36 1 8.6952 2.3668 -4.9552 37 1 4.9407 -0.9572 -0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032683993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:34 Heat of formation + Delta-G solvation = 64.451228 kcal Electronic energy + Delta-G solvation = -21334.766511 eV Core-core repulsion = 18205.899231 eV Total energy + Delta-G solvation = -3128.867280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26458 -38.26437 -36.65358 -33.77813 -32.43430 -31.17613 -29.17177 -28.61639 -26.61170 -25.46138 -24.74263 -23.03165 -20.86295 -20.04448 -19.32318 -18.80381 -17.11422 -16.99987 -16.03896 -15.63906 -15.04891 -14.72484 -14.19203 -13.99059 -13.80997 -13.53803 -13.16807 -12.97247 -12.49464 -12.31578 -12.04753 -11.95916 -11.74639 -11.64777 -11.30624 -11.05250 -10.97256 -10.89440 -10.71673 -10.64171 -10.23431 -10.08095 -9.68036 -9.49540 -8.76222 -8.73667 -8.39413 -7.99588 -6.96320 -5.80020 -3.15002 0.88381 1.55622 1.95973 2.13817 3.34371 3.36068 3.39915 3.43291 3.71864 4.38651 4.69006 4.88809 5.03582 5.12780 5.16574 5.26324 5.36632 5.38038 5.48628 5.52682 5.57804 5.73371 5.74452 5.81009 5.96721 6.04879 6.13013 6.24378 6.34482 6.37890 6.48752 6.54836 6.67325 7.39207 7.46123 7.69157 8.04165 8.07683 8.59533 9.06586 9.67606 10.36272 11.32079 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.004709 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.683735 B = 5944.149661 C = 6491.789126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.209 4.209 3 C -0.088 4.088 4 C -0.141 4.141 5 C 0.589 3.411 6 O -0.554 6.554 7 N -0.599 5.599 8 C 0.075 3.925 9 C 0.140 3.860 10 H 0.108 0.892 11 C -0.150 4.150 12 C 0.099 3.901 13 H 0.116 0.884 14 C 0.173 3.827 15 N -0.597 5.597 16 C -0.234 4.234 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C -0.223 4.223 25 S 0.161 5.839 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.254 0.746 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 -6.337 10.556 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.325 4.325 3 C -0.117 4.117 4 C -0.159 4.159 5 C 0.377 3.623 6 O -0.434 6.434 7 N -0.331 5.331 8 C -0.050 4.050 9 C 0.031 3.969 10 H 0.126 0.874 11 C -0.190 4.190 12 C -0.003 4.003 13 H 0.134 0.866 14 C 0.048 3.952 15 N -0.321 5.321 16 C -0.361 4.361 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.360 4.360 25 S 0.426 5.574 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.168 0.832 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.332 -7.204 10.317 16.934 hybrid contribution 0.828 1.070 -0.969 1.664 sum -10.505 -6.135 9.349 15.342 Atomic orbital electron populations 1.20302 0.87655 1.03003 1.02752 1.24302 1.00268 0.96077 1.11857 1.21018 0.90490 0.99551 1.00684 1.20298 0.94150 0.92654 1.08759 1.17196 0.80774 0.87528 0.76835 1.90740 1.81498 1.19030 1.52136 1.49022 1.04898 1.08943 1.70241 1.23609 0.98348 0.83483 0.99591 1.23220 0.90997 0.95465 0.87231 0.87415 1.24147 0.99076 0.98347 0.97394 1.24389 0.82582 0.94001 0.99329 0.86634 1.21950 0.96512 0.87446 0.89299 1.45250 1.65173 1.15855 1.05795 1.19090 1.28817 0.99334 0.88892 0.90056 1.24827 1.00809 0.96810 0.97717 1.69928 1.49381 1.14456 1.22698 0.86045 0.78889 0.78605 0.82178 1.20431 1.21767 1.21681 1.26611 1.05279 0.97883 1.06264 1.82869 0.94466 1.09025 1.70993 0.90814 0.91413 0.90577 0.83198 0.92427 0.90530 0.89611 0.91565 0.93434 0.92448 0.93577 0.79409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.34 36.00 0.37 -0.30 16 2 C -0.21 -2.52 6.44 -36.18 -0.23 -2.76 16 3 C -0.09 -1.31 9.96 -39.02 -0.39 -1.69 16 4 C -0.14 -2.37 5.98 -104.63 -0.63 -3.00 16 5 C 0.59 11.70 7.87 -12.63 -0.10 11.60 16 6 O -0.55 -12.47 17.14 5.24 0.09 -12.38 16 7 N -0.60 -11.45 2.95 -158.11 -0.47 -11.91 16 8 C 0.08 1.27 4.30 -1.68 -0.01 1.27 16 9 C 0.14 2.54 5.53 -62.55 -0.35 2.20 16 10 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 11 C -0.15 -2.53 6.81 -22.31 -0.15 -2.68 16 12 C 0.10 1.95 5.25 -62.55 -0.33 1.62 16 13 H 0.12 2.22 8.03 -51.93 -0.42 1.80 16 14 C 0.17 4.16 4.76 -1.67 -0.01 4.15 16 15 N -0.60 -14.18 3.02 -156.34 -0.47 -14.65 16 16 C -0.23 -6.13 10.37 -15.06 -0.16 -6.29 16 17 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 18 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 19 N -0.92 -26.68 10.56 55.49 0.59 -26.10 16 20 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.22 -3.19 9.57 29.93 0.29 -2.90 16 25 S 0.16 1.85 23.00 -107.50 -2.47 -0.62 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.06 0.80 6.98 -51.93 -0.36 0.43 16 31 H 0.08 1.41 6.96 -51.93 -0.36 1.05 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 1.32 7.68 -51.93 -0.40 0.93 16 35 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.19 2.55 3.79 -52.49 -0.20 2.35 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -31.84 314.16 -9.44 -41.28 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.63 Total: 2.13 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.78 Total: 0.99 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.35 Total: -52.66 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.47 Total: -0.62 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.84 -9.44 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032683993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.727 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds