Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48498 * 109.46687 * 274.99720 * 3 2 1 5 5 H 1.48495 * 109.46955 * 34.99692 * 3 2 1 6 6 H 1.48494 * 109.47162 * 154.99630 * 3 2 1 7 7 C 1.38817 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 174.65106 * 7 2 1 9 9 N 1.36929 * 120.00320 * 354.65221 * 7 2 1 10 10 C 1.46641 * 125.32961 * 5.06136 * 9 7 2 11 11 C 1.53694 * 108.01105 * 180.81698 * 10 9 7 12 12 H 1.09000 * 113.05312 * 253.80586 * 11 10 9 13 13 C 1.53722 * 109.34412 * 127.55193 * 11 10 9 14 14 N 1.46669 * 107.94368 * 266.25115 * 13 11 10 15 15 C 1.34778 * 125.33565 * 180.54434 * 14 13 11 16 16 O 1.21701 * 119.99850 * 184.88289 * 15 14 13 17 17 C 1.46582 * 120.00389 * 4.87790 * 15 14 13 18 18 C 1.36643 * 125.45962 * 174.39682 * 17 15 14 19 19 C 1.37471 * 113.29562 * 179.72386 * 18 17 15 20 20 C 1.33816 * 115.10192 * 0.45164 * 19 18 17 21 21 S 1.70609 * 110.95504 * 359.56205 * 20 19 18 22 22 C 1.46771 * 109.32248 * 0.81078 * 14 13 11 23 23 C 1.54167 * 106.52610 * 341.08778 * 22 14 13 24 24 H 1.08992 * 113.83100 * 265.68474 * 23 22 14 25 25 C 1.46752 * 125.33059 * 185.03004 * 9 7 2 26 26 H 0.96992 * 119.99943 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.76552 * 61.16913 * 10 9 7 28 28 H 1.09004 * 109.75764 * 300.44880 * 10 9 7 29 29 H 1.09006 * 109.77332 * 146.62755 * 13 11 10 30 30 H 1.09002 * 109.77224 * 25.87444 * 13 11 10 31 31 H 1.07997 * 123.35166 * 359.94756 * 18 17 15 32 32 H 1.08003 * 122.44881 * 180.28207 * 19 18 17 33 33 H 1.08002 * 124.52064 * 179.82624 * 20 19 18 34 34 H 1.09001 * 110.03008 * 100.50833 * 22 14 13 35 35 H 1.09000 * 110.02798 * 221.92430 * 22 14 13 36 36 H 1.08999 * 110.00197 * 42.37062 * 25 9 7 37 37 H 1.08995 * 110.00806 * 280.99888 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0867 -1.2043 -0.0867 9 7 1.3301 -2.3854 0.1116 10 6 -0.1295 -2.5260 0.1305 11 6 -0.4611 -4.0183 0.2893 12 1 -0.8290 -4.4740 -0.6300 13 6 -1.4310 -4.2018 1.4678 14 7 -0.6365 -4.4937 2.6656 15 6 -1.1368 -4.7262 3.8953 16 8 -0.3846 -4.8712 4.8409 17 6 -2.5871 -4.8041 4.0939 18 6 -3.2102 -5.1398 5.2627 19 6 -4.5817 -5.1291 5.1701 20 6 -5.0669 -4.8056 3.9657 21 16 -3.8036 -4.4797 2.8664 22 6 0.7890 -4.4867 2.3164 23 6 0.8665 -4.6555 0.7860 24 1 0.9954 -5.6884 0.4628 25 6 1.9476 -3.7115 0.2296 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5479 -2.1529 -0.8042 28 1 -0.5428 -1.9655 0.9691 29 1 -2.1076 -5.0315 1.2628 30 1 -2.0042 -3.2872 1.6194 31 1 -2.6782 -5.3854 6.1699 32 1 -5.2209 -5.3671 6.0076 33 1 -6.1181 -4.7533 3.7232 34 1 1.2416 -3.5408 2.6139 35 1 1.2980 -5.3155 2.8085 36 1 2.7942 -3.6688 0.9149 37 1 2.2771 -4.0579 -0.7499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048657599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = 35.591398 kcal Electronic energy + Delta-G solvation = -21344.069625 eV Core-core repulsion = 18213.950889 eV Total energy + Delta-G solvation = -3130.118736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21075 -38.52227 -37.20894 -34.98867 -32.40083 -30.40723 -30.20338 -29.10426 -25.98726 -25.64359 -24.53676 -22.93673 -20.68780 -20.17912 -19.54696 -18.92225 -17.87344 -16.83259 -16.15275 -15.86996 -15.58779 -14.90262 -14.49396 -14.29270 -13.77960 -13.24806 -13.17456 -12.87439 -12.69905 -12.63943 -12.36655 -12.21753 -11.91295 -11.54007 -11.46190 -11.01131 -10.88674 -10.81599 -10.34053 -10.15138 -10.11578 -9.92239 -9.82102 -9.68865 -8.95822 -8.64934 -8.61365 -8.29656 -6.86581 -5.76801 -3.09252 0.52387 1.48716 1.92008 2.38477 3.15056 3.32784 3.38641 3.44888 3.46532 4.47554 4.54925 4.78908 4.90561 5.07053 5.22195 5.25503 5.38805 5.42622 5.47942 5.62615 5.69845 5.70904 5.88479 5.98724 6.09957 6.15153 6.19353 6.27949 6.33518 6.46068 6.55731 6.63159 6.78777 7.47267 7.53865 7.67825 7.76573 8.22632 8.26854 9.18608 9.79143 10.42583 11.35354 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.004659 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.041659 B = 6008.097603 C = 6413.543019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.117 4.117 12 H 0.094 0.906 13 C 0.099 3.901 14 N -0.603 5.603 15 C 0.600 3.400 16 O -0.538 6.538 17 C -0.258 4.258 18 C -0.064 4.064 19 C -0.152 4.152 20 C -0.257 4.257 21 S 0.231 5.769 22 C 0.123 3.877 23 C -0.111 4.111 24 H 0.091 0.909 25 C 0.145 3.855 26 H 0.253 0.747 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -11.985 4.020 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.058 3.942 11 C -0.137 4.137 12 H 0.112 0.888 13 C -0.025 4.025 14 N -0.335 5.335 15 C 0.389 3.611 16 O -0.418 6.418 17 C -0.379 4.379 18 C -0.098 4.098 19 C -0.183 4.183 20 C -0.394 4.394 21 S 0.499 5.501 22 C 0.001 3.999 23 C -0.131 4.131 24 H 0.109 0.891 25 C 0.018 3.982 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.182 0.818 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -9.110 -11.402 3.060 14.912 hybrid contribution 0.030 0.533 1.513 1.604 sum -9.080 -10.869 4.572 14.883 Atomic orbital electron populations 1.69942 1.04925 1.25118 1.56858 1.24803 0.95706 0.97695 1.01934 0.86119 0.78770 0.83561 0.77456 1.21645 1.21650 1.20583 1.19043 0.90919 0.82351 1.43510 0.90316 1.44193 1.01376 1.00815 1.86483 1.21142 0.84896 0.86689 1.01432 1.23107 0.93599 1.01157 0.95866 0.88753 1.22103 0.94392 1.00658 0.85390 1.48084 1.08807 1.68889 1.07700 1.16538 0.85738 0.77153 0.81717 1.90808 1.59229 1.51946 1.39797 1.24659 0.97137 1.16487 0.99586 1.20730 0.93594 0.97765 0.97702 1.19974 0.94724 1.05340 0.98222 1.25679 1.05740 1.08208 0.99788 1.83657 0.92843 1.62169 1.11404 1.22028 0.80571 1.02612 0.94703 1.22985 0.97007 0.99361 0.93756 0.89050 1.21181 0.93854 0.86002 0.97137 0.93711 0.93837 0.92760 0.91604 0.90194 0.83156 0.84248 0.81821 0.90096 0.91277 0.94186 0.96095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.28 55.49 0.57 -25.75 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.89 29.56 -169.99 -5.02 16.86 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.25 10.24 -15.06 -0.15 -6.41 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.70 3.37 -171.92 -0.58 -15.28 16 10 C 0.18 4.16 4.76 -3.60 -0.02 4.14 16 11 C -0.12 -1.98 4.02 -88.60 -0.36 -2.34 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C 0.10 1.53 4.58 -3.57 -0.02 1.52 16 14 N -0.60 -10.42 3.31 -173.74 -0.58 -11.00 16 15 C 0.60 10.78 7.79 -12.90 -0.10 10.68 16 16 O -0.54 -11.18 17.16 5.19 0.09 -11.09 16 17 C -0.26 -3.84 6.38 -36.79 -0.23 -4.08 16 18 C -0.06 -0.84 10.02 -40.44 -0.41 -1.24 16 19 C -0.15 -1.62 10.15 -41.41 -0.42 -2.04 16 20 C -0.26 -2.62 10.92 29.18 0.32 -2.30 16 21 S 0.23 2.74 18.41 -107.50 -1.98 0.76 16 22 C 0.12 2.16 6.08 -3.28 -0.02 2.14 16 23 C -0.11 -1.81 4.19 -88.24 -0.37 -2.18 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 25 C 0.14 2.83 6.37 -3.42 -0.02 2.80 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.04 1.09 7.59 -51.93 -0.39 0.70 16 28 H 0.05 1.40 6.37 -51.93 -0.33 1.06 16 29 H 0.07 0.85 6.67 -51.89 -0.35 0.50 16 30 H 0.08 1.31 6.37 -51.93 -0.33 0.98 16 31 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.08 1.67 7.72 -51.93 -0.40 1.27 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.77 7.94 -51.93 -0.41 0.36 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -31.66 309.93 -9.44 -41.10 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.72 Total: -0.73 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.89 Total: 0.46 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.58 Total: -52.03 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.98 Total: 0.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.66 -9.44 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048657599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.691 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds