Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48498 * 109.46687 * 274.99720 * 3 2 1 5 5 H 1.48495 * 109.46955 * 34.99692 * 3 2 1 6 6 H 1.48494 * 109.47162 * 154.99630 * 3 2 1 7 7 C 1.38817 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 174.65106 * 7 2 1 9 9 N 1.36929 * 120.00320 * 354.65221 * 7 2 1 10 10 C 1.46641 * 125.32961 * 5.06136 * 9 7 2 11 11 C 1.53694 * 108.01105 * 180.81698 * 10 9 7 12 12 H 1.09000 * 113.05312 * 253.80586 * 11 10 9 13 13 C 1.53722 * 109.34412 * 127.55193 * 11 10 9 14 14 N 1.46669 * 107.94368 * 266.25115 * 13 11 10 15 15 C 1.34778 * 125.33565 * 180.54434 * 14 13 11 16 16 O 1.21701 * 119.99850 * 184.88289 * 15 14 13 17 17 C 1.46582 * 120.00389 * 4.87790 * 15 14 13 18 18 C 1.36643 * 125.45962 * 174.39682 * 17 15 14 19 19 C 1.37471 * 113.29562 * 179.72386 * 18 17 15 20 20 C 1.33816 * 115.10192 * 0.45164 * 19 18 17 21 21 S 1.70609 * 110.95504 * 359.56205 * 20 19 18 22 22 C 1.46771 * 109.32248 * 0.81078 * 14 13 11 23 23 C 1.54167 * 106.52610 * 341.08778 * 22 14 13 24 24 H 1.08992 * 113.83100 * 265.68474 * 23 22 14 25 25 C 1.46752 * 125.33059 * 185.03004 * 9 7 2 26 26 H 0.96992 * 119.99943 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.76552 * 61.16913 * 10 9 7 28 28 H 1.09004 * 109.75764 * 300.44880 * 10 9 7 29 29 H 1.09006 * 109.77332 * 146.62755 * 13 11 10 30 30 H 1.09002 * 109.77224 * 25.87444 * 13 11 10 31 31 H 1.07997 * 123.35166 * 359.94756 * 18 17 15 32 32 H 1.08003 * 122.44881 * 180.28207 * 19 18 17 33 33 H 1.08002 * 124.52064 * 179.82624 * 20 19 18 34 34 H 1.09001 * 110.03008 * 100.50833 * 22 14 13 35 35 H 1.09000 * 110.02798 * 221.92430 * 22 14 13 36 36 H 1.08999 * 110.00197 * 42.37062 * 25 9 7 37 37 H 1.08995 * 110.00806 * 280.99888 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0867 -1.2043 -0.0867 9 7 1.3301 -2.3854 0.1116 10 6 -0.1295 -2.5260 0.1305 11 6 -0.4611 -4.0183 0.2893 12 1 -0.8290 -4.4740 -0.6300 13 6 -1.4310 -4.2018 1.4678 14 7 -0.6365 -4.4937 2.6656 15 6 -1.1368 -4.7262 3.8953 16 8 -0.3846 -4.8712 4.8409 17 6 -2.5871 -4.8041 4.0939 18 6 -3.2102 -5.1398 5.2627 19 6 -4.5817 -5.1291 5.1701 20 6 -5.0669 -4.8056 3.9657 21 16 -3.8036 -4.4797 2.8664 22 6 0.7890 -4.4867 2.3164 23 6 0.8665 -4.6555 0.7860 24 1 0.9954 -5.6884 0.4628 25 6 1.9476 -3.7115 0.2296 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5479 -2.1529 -0.8042 28 1 -0.5428 -1.9655 0.9691 29 1 -2.1076 -5.0315 1.2628 30 1 -2.0042 -3.2872 1.6194 31 1 -2.6782 -5.3854 6.1699 32 1 -5.2209 -5.3671 6.0076 33 1 -6.1181 -4.7533 3.7232 34 1 1.2416 -3.5408 2.6139 35 1 1.2980 -5.3155 2.8085 36 1 2.7942 -3.6688 0.9149 37 1 2.2771 -4.0579 -0.7499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048657599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = 15.683477 kcal Electronic energy + Delta-G solvation = -21344.932897 eV Core-core repulsion = 18213.950889 eV Total energy + Delta-G solvation = -3130.982008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60564 -39.86269 -38.28916 -36.63325 -34.22115 -31.81253 -31.76747 -30.41099 -27.54514 -27.23274 -25.85065 -24.35160 -21.93930 -21.81052 -20.97684 -19.93732 -19.20254 -18.69070 -17.50177 -17.16244 -16.70263 -16.58542 -16.05335 -15.59532 -15.46818 -14.73904 -14.48835 -14.29062 -13.84619 -13.80465 -13.65235 -13.51845 -13.25623 -13.17823 -13.08441 -12.78175 -12.67788 -12.17238 -12.00395 -11.88935 -11.58172 -11.51384 -11.36924 -11.24356 -10.66526 -10.05903 -9.67691 -9.44736 -8.85455 -7.86366 -5.19259 -0.47347 0.51944 1.01973 1.40159 1.44826 1.46591 1.55110 1.86364 2.11292 2.49195 3.26072 3.31242 3.45661 3.73054 3.82854 3.91311 4.15734 4.18845 4.25243 4.36887 4.41897 4.55518 4.56321 4.72778 4.76311 4.87411 4.98213 5.02616 5.05427 5.16291 5.28004 5.36147 5.39669 5.49088 5.65225 5.78543 6.22975 6.34362 6.91904 7.12970 7.81109 8.42011 9.24132 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.004659 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.041659 B = 6008.097603 C = 6413.543019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.625 5.625 10 C 0.194 3.806 11 C -0.106 4.106 12 H 0.130 0.870 13 C 0.104 3.896 14 N -0.607 5.607 15 C 0.594 3.406 16 O -0.581 6.581 17 C -0.304 4.304 18 C -0.059 4.059 19 C -0.158 4.158 20 C -0.235 4.235 21 S 0.243 5.757 22 C 0.123 3.877 23 C -0.091 4.091 24 H 0.138 0.862 25 C 0.138 3.862 26 H 0.246 0.754 27 H 0.011 0.989 28 H 0.013 0.987 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.199 0.801 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -13.806 3.629 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.069 3.931 11 C -0.126 4.126 12 H 0.148 0.852 13 C -0.020 4.020 14 N -0.338 5.338 15 C 0.385 3.615 16 O -0.464 6.464 17 C -0.423 4.423 18 C -0.093 4.093 19 C -0.188 4.188 20 C -0.372 4.372 21 S 0.511 5.489 22 C 0.001 3.999 23 C -0.111 4.111 24 H 0.156 0.844 25 C 0.013 3.987 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.031 0.969 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.188 0.812 33 H 0.216 0.784 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.664 -13.250 2.641 17.212 hybrid contribution 0.473 1.100 1.670 2.055 sum -10.191 -12.150 4.311 16.434 Atomic orbital electron populations 1.70154 1.06096 1.25146 1.58158 1.25567 0.96564 1.00714 1.02588 0.85167 0.77808 0.79687 0.77351 1.21104 1.22367 1.19642 1.19410 0.91391 0.83862 1.42443 0.90129 1.44501 1.02444 1.01931 1.86262 1.20861 0.83902 0.90393 0.97990 1.23037 0.94543 0.96954 0.98058 0.85164 1.22119 0.94197 1.01587 0.84052 1.48174 1.08745 1.68645 1.08239 1.17039 0.87069 0.76199 0.81197 1.90762 1.60690 1.54064 1.40921 1.24497 0.96083 1.20019 1.01747 1.20990 0.94927 0.96357 0.97075 1.20216 0.93738 1.05319 0.99541 1.26102 1.06831 1.05474 0.98814 1.83502 0.92474 1.61913 1.10993 1.21924 0.81117 1.00876 0.96027 1.22997 0.95071 1.00834 0.92158 0.84387 1.21387 0.94753 0.84608 0.97974 0.94446 0.97091 0.96872 0.87937 0.91481 0.83443 0.81233 0.78370 0.94312 0.90093 0.94430 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.23 10.28 21.65 0.22 -56.00 16 2 C -0.06 -3.46 5.48 84.86 0.47 -3.00 16 3 Si 0.97 46.03 29.56 68.60 2.03 48.06 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.24 -13.46 10.24 84.04 0.86 -12.60 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.62 -31.11 3.37 -697.85 -2.35 -33.46 16 10 C 0.19 9.01 4.76 86.59 0.41 9.42 16 11 C -0.11 -3.42 4.02 -9.49 -0.04 -3.46 16 12 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 13 C 0.10 3.10 4.58 86.59 0.40 3.49 16 14 N -0.61 -20.92 3.31 -821.81 -2.72 -23.65 16 15 C 0.59 21.66 7.79 86.42 0.67 22.33 16 16 O -0.58 -25.03 17.16 -4.35 -0.07 -25.10 16 17 C -0.30 -8.83 6.38 24.07 0.15 -8.67 16 18 C -0.06 -1.46 10.02 21.72 0.22 -1.24 16 19 C -0.16 -2.87 10.15 21.08 0.21 -2.66 16 20 C -0.23 -3.89 10.92 66.81 0.73 -3.16 16 21 S 0.24 5.23 18.41 -56.49 -1.04 4.19 16 22 C 0.12 4.32 6.08 86.72 0.53 4.85 16 23 C -0.09 -2.78 4.19 -9.25 -0.04 -2.82 16 24 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 25 C 0.14 5.28 6.37 86.65 0.55 5.83 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.01 0.57 7.59 -2.39 -0.02 0.55 16 28 H 0.01 0.71 6.37 -2.39 -0.02 0.70 16 29 H 0.10 2.33 6.67 -2.41 -0.02 2.32 16 30 H 0.07 2.20 6.37 -2.39 -0.02 2.19 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.04 1.67 7.72 -2.39 -0.02 1.66 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.04 1.45 7.94 -2.39 -0.02 1.43 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.07 309.93 2.26 -70.80 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.08 Total: 6.84 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.13 Total: 8.32 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -4.85 Total: -113.11 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.07 Total: -25.10 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.04 Total: 4.19 kcal Total: -73.07 2.26 -70.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048657599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.488 kcal (2) G-P(sol) polarization free energy of solvation -73.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds