Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48502 * 109.47401 * 270.00396 * 3 2 1 5 5 H 1.48503 * 109.47093 * 30.00337 * 3 2 1 6 6 H 1.48504 * 109.47025 * 150.00184 * 3 2 1 7 7 C 1.38806 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00173 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.46779 * 125.33910 * 179.97438 * 9 7 2 11 11 C 1.53964 * 106.62339 * 161.50370 * 10 9 7 12 12 H 1.09003 * 113.01851 * 265.72009 * 11 10 9 13 13 C 1.53938 * 109.24959 * 138.18986 * 11 10 9 14 14 N 1.46741 * 106.71890 * 278.36682 * 13 11 10 15 15 C 1.34780 * 125.32494 * 161.92078 * 14 13 11 16 16 O 1.21638 * 120.00093 * 178.64226 * 15 14 13 17 17 C 1.47186 * 120.00164 * 358.64954 * 15 14 13 18 18 C 1.44428 * 123.46107 * 9.27838 * 17 15 14 19 19 C 1.32772 * 113.08368 * 179.97438 * 18 17 15 20 20 S 1.75499 * 110.57632 * 0.02562 * 19 18 17 21 21 C 1.36011 * 123.45997 * 188.97877 * 17 15 14 22 22 C 1.46631 * 109.34436 * 341.65672 * 14 13 11 23 23 C 1.53689 * 108.00870 * 0.83809 * 22 14 13 24 24 H 1.09002 * 112.56253 * 254.08647 * 23 22 14 25 25 C 1.48239 * 125.14350 * 359.97438 * 9 7 2 26 26 H 0.97000 * 120.00392 * 359.97438 * 1 2 3 27 27 H 1.08998 * 110.02624 * 42.21811 * 10 9 7 28 28 H 1.08997 * 110.03017 * 280.79820 * 10 9 7 29 29 H 1.08995 * 110.01008 * 159.04671 * 13 11 10 30 30 H 1.09000 * 110.00453 * 37.68316 * 13 11 10 31 31 H 1.07995 * 123.45645 * 359.97438 * 18 17 15 32 32 H 1.07996 * 124.71125 * 179.97438 * 19 18 17 33 33 H 1.08000 * 124.59255 * 359.97438 * 21 17 15 34 34 H 1.09004 * 109.76027 * 120.47944 * 22 14 13 35 35 H 1.08996 * 109.76173 * 241.19471 * 22 14 13 36 36 H 1.09004 * 110.29737 * 61.05594 * 25 9 7 37 37 H 1.08993 * 110.03846 * 299.78925 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9380 -3.7220 -0.0016 11 6 0.8507 -4.7062 0.4668 12 1 0.8872 -4.9034 1.5382 13 6 0.9123 -5.9791 -0.3967 14 7 0.1864 -5.6833 -1.6372 15 6 0.2893 -6.3811 -2.7857 16 8 -0.3784 -6.0643 -3.7518 17 6 1.2095 -7.5267 -2.8708 18 6 1.8898 -8.0885 -1.7273 19 6 2.6697 -9.1168 -2.0390 20 16 2.6027 -9.4417 -3.7623 21 6 1.5021 -8.1687 -4.0337 22 6 -0.6731 -4.5136 -1.4298 23 6 -0.4702 -4.0247 0.0131 24 1 -1.3135 -4.2678 0.6595 25 6 -0.1509 -2.5210 0.0005 26 1 -0.4851 0.8400 0.0004 27 1 2.7835 -3.7450 0.6859 28 1 2.2674 -3.9807 -1.0079 29 1 0.4352 -6.8080 0.1262 30 1 1.9496 -6.2273 -0.6216 31 1 1.7757 -7.7109 -0.7220 32 1 3.2635 -9.6752 -1.3305 33 1 1.0938 -7.9063 -4.9985 34 1 -0.3963 -3.7243 -2.1287 35 1 -1.7161 -4.7911 -1.5817 36 1 -0.5725 -2.0617 -0.8936 37 1 -0.5678 -2.0482 0.8897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048661673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = 47.912719 kcal Electronic energy + Delta-G solvation = -21290.968431 eV Core-core repulsion = 18161.383987 eV Total energy + Delta-G solvation = -3129.584444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43648 -38.40377 -36.78707 -34.94432 -32.21871 -30.39726 -30.00189 -29.54213 -26.38168 -25.61517 -24.14002 -23.05881 -20.71414 -20.09948 -19.38085 -19.21210 -17.99487 -16.86128 -16.10385 -15.80061 -15.62255 -14.74646 -14.54385 -14.19995 -13.68338 -13.31735 -13.15608 -13.11394 -12.72333 -12.65863 -12.43168 -12.07559 -11.73649 -11.69718 -11.43911 -11.04051 -10.90530 -10.79644 -10.31463 -10.12878 -10.01348 -9.89626 -9.76730 -9.64654 -9.20234 -8.64333 -8.62198 -8.33086 -6.84636 -5.72776 -3.05950 0.69536 1.38473 1.72952 1.92021 3.24239 3.40390 3.44097 3.45374 3.47063 4.48181 4.54516 4.70395 4.76922 4.95540 5.15878 5.25729 5.31074 5.41527 5.49142 5.55648 5.66953 5.73040 5.77462 5.88797 5.93289 6.06406 6.11871 6.26638 6.33024 6.54913 6.60969 6.68055 6.82923 7.51700 7.55178 7.71079 7.79244 8.22980 8.32326 9.19421 9.81131 10.45246 11.39286 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026818 B = 0.003830 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.836807 B = 7308.394333 C = 7479.828302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.146 3.854 11 C -0.111 4.111 12 H 0.100 0.900 13 C 0.099 3.901 14 N -0.599 5.599 15 C 0.589 3.411 16 O -0.545 6.545 17 C -0.153 4.153 18 C -0.129 4.129 19 C -0.234 4.234 20 S 0.171 5.829 21 C -0.181 4.181 22 C 0.119 3.881 23 C -0.123 4.123 24 H 0.088 0.912 25 C 0.188 3.812 26 H 0.253 0.747 27 H 0.035 0.965 28 H 0.017 0.983 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -19.794 -1.387 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.019 3.981 11 C -0.131 4.131 12 H 0.118 0.882 13 C -0.024 4.024 14 N -0.331 5.331 15 C 0.376 3.624 16 O -0.424 6.424 17 C -0.170 4.170 18 C -0.158 4.158 19 C -0.369 4.369 20 S 0.435 5.565 21 C -0.320 4.320 22 C -0.003 4.003 23 C -0.143 4.143 24 H 0.107 0.893 25 C 0.064 3.936 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.192 0.808 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.613 -20.484 -2.893 21.000 hybrid contribution -0.253 2.004 0.911 2.216 sum 3.360 -18.480 -1.981 18.887 Atomic orbital electron populations 1.69933 1.04869 1.25103 1.57128 1.24779 0.95724 0.97663 1.02175 0.86116 0.78559 0.83470 0.77585 1.21618 1.21657 1.20715 1.19052 0.90437 0.82432 1.43808 0.90474 1.44596 1.01366 0.99872 1.87300 1.21226 0.93756 0.85861 0.97223 1.22980 0.97244 0.93729 0.99125 0.88161 1.22459 0.96997 0.97853 0.85120 1.48027 1.43762 1.30356 1.10971 1.17208 0.81930 0.81632 0.81599 1.90786 1.46204 1.69421 1.35994 1.20273 1.03469 1.00209 0.93061 1.22208 0.96888 0.96075 1.00600 1.25536 1.07830 1.04378 0.99109 1.83001 1.40479 1.30027 1.02954 1.25549 1.02867 1.00559 1.02986 1.22008 0.93551 0.87011 0.97711 1.23149 0.97024 1.00233 0.93926 0.89349 1.21326 0.84314 0.86401 1.01608 0.93691 0.94676 0.96536 0.91507 0.89691 0.81248 0.81394 0.80811 0.90507 0.92023 0.93042 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.25 55.49 0.57 -26.25 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.35 10.25 -15.06 -0.15 -6.50 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.14 3.42 -170.56 -0.58 -15.72 16 10 C 0.15 2.90 6.48 -3.39 -0.02 2.88 16 11 C -0.11 -1.74 4.17 -88.35 -0.37 -2.11 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 C 0.10 1.30 4.17 -3.42 -0.01 1.29 16 14 N -0.60 -9.81 3.30 -173.74 -0.57 -10.39 16 15 C 0.59 10.17 7.80 -12.63 -0.10 10.08 16 16 O -0.54 -11.24 17.06 5.24 0.09 -11.15 16 17 C -0.15 -2.11 5.94 -104.63 -0.62 -2.73 16 18 C -0.13 -1.39 8.68 -39.02 -0.34 -1.73 16 19 C -0.23 -2.06 11.12 28.86 0.32 -1.74 16 20 S 0.17 1.50 23.02 -107.50 -2.48 -0.98 16 21 C -0.18 -2.19 10.53 29.93 0.32 -1.87 16 22 C 0.12 2.14 6.21 -3.61 -0.02 2.12 16 23 C -0.12 -2.18 3.97 -88.60 -0.35 -2.53 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 C 0.19 4.40 4.84 -2.70 -0.01 4.39 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.02 0.35 7.71 -51.93 -0.40 -0.05 16 29 H 0.07 0.71 7.57 -51.93 -0.39 0.31 16 30 H 0.09 1.02 5.49 -51.93 -0.28 0.74 16 31 H 0.17 1.58 4.06 -52.49 -0.21 1.37 16 32 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.17 2.05 8.03 -52.49 -0.42 1.63 16 34 H 0.08 1.62 7.30 -51.93 -0.38 1.25 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.35 6.76 -51.93 -0.35 1.00 16 37 H 0.05 1.30 7.41 -51.93 -0.38 0.91 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -32.74 308.68 -9.30 -42.04 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.49 Total: -0.53 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.46 Total: 1.24 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.59 Total: -52.35 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.74 -9.30 -42.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048661673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.954 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds