Wall clock time and date at job start Tue Mar 31 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48502 * 109.47401 * 270.00396 * 3 2 1 5 5 H 1.48503 * 109.47093 * 30.00337 * 3 2 1 6 6 H 1.48504 * 109.47025 * 150.00184 * 3 2 1 7 7 C 1.38806 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00173 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.46779 * 125.33910 * 179.97438 * 9 7 2 11 11 C 1.53964 * 106.62339 * 161.50370 * 10 9 7 12 12 H 1.09003 * 113.01851 * 265.72009 * 11 10 9 13 13 C 1.53938 * 109.24959 * 138.18986 * 11 10 9 14 14 N 1.46741 * 106.71890 * 278.36682 * 13 11 10 15 15 C 1.34780 * 125.32494 * 161.92078 * 14 13 11 16 16 O 1.21638 * 120.00093 * 178.64226 * 15 14 13 17 17 C 1.47186 * 120.00164 * 358.64954 * 15 14 13 18 18 C 1.44428 * 123.46107 * 9.27838 * 17 15 14 19 19 C 1.32772 * 113.08368 * 179.97438 * 18 17 15 20 20 S 1.75499 * 110.57632 * 0.02562 * 19 18 17 21 21 C 1.36011 * 123.45997 * 188.97877 * 17 15 14 22 22 C 1.46631 * 109.34436 * 341.65672 * 14 13 11 23 23 C 1.53689 * 108.00870 * 0.83809 * 22 14 13 24 24 H 1.09002 * 112.56253 * 254.08647 * 23 22 14 25 25 C 1.48239 * 125.14350 * 359.97438 * 9 7 2 26 26 H 0.97000 * 120.00392 * 359.97438 * 1 2 3 27 27 H 1.08998 * 110.02624 * 42.21811 * 10 9 7 28 28 H 1.08997 * 110.03017 * 280.79820 * 10 9 7 29 29 H 1.08995 * 110.01008 * 159.04671 * 13 11 10 30 30 H 1.09000 * 110.00453 * 37.68316 * 13 11 10 31 31 H 1.07995 * 123.45645 * 359.97438 * 18 17 15 32 32 H 1.07996 * 124.71125 * 179.97438 * 19 18 17 33 33 H 1.08000 * 124.59255 * 359.97438 * 21 17 15 34 34 H 1.09004 * 109.76027 * 120.47944 * 22 14 13 35 35 H 1.08996 * 109.76173 * 241.19471 * 22 14 13 36 36 H 1.09004 * 110.29737 * 61.05594 * 25 9 7 37 37 H 1.08993 * 110.03846 * 299.78925 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9380 -3.7220 -0.0016 11 6 0.8507 -4.7062 0.4668 12 1 0.8872 -4.9034 1.5382 13 6 0.9123 -5.9791 -0.3967 14 7 0.1864 -5.6833 -1.6372 15 6 0.2893 -6.3811 -2.7857 16 8 -0.3784 -6.0643 -3.7518 17 6 1.2095 -7.5267 -2.8708 18 6 1.8898 -8.0885 -1.7273 19 6 2.6697 -9.1168 -2.0390 20 16 2.6027 -9.4417 -3.7623 21 6 1.5021 -8.1687 -4.0337 22 6 -0.6731 -4.5136 -1.4298 23 6 -0.4702 -4.0247 0.0131 24 1 -1.3135 -4.2678 0.6595 25 6 -0.1509 -2.5210 0.0005 26 1 -0.4851 0.8400 0.0004 27 1 2.7835 -3.7450 0.6859 28 1 2.2674 -3.9807 -1.0079 29 1 0.4352 -6.8080 0.1262 30 1 1.9496 -6.2273 -0.6216 31 1 1.7757 -7.7109 -0.7220 32 1 3.2635 -9.6752 -1.3305 33 1 1.0938 -7.9063 -4.9985 34 1 -0.3963 -3.7243 -2.1287 35 1 -1.7161 -4.7911 -1.5817 36 1 -0.5725 -2.0617 -0.8936 37 1 -0.5678 -2.0482 0.8897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048661673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:26 Heat of formation + Delta-G solvation = 26.347827 kcal Electronic energy + Delta-G solvation = -21291.903554 eV Core-core repulsion = 18161.383987 eV Total energy + Delta-G solvation = -3130.519568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73790 -39.77650 -37.78747 -36.61064 -34.06135 -31.94366 -31.35463 -30.66908 -27.89094 -27.27611 -25.53084 -24.35416 -22.19459 -21.37116 -20.83702 -20.33878 -19.06078 -18.60991 -17.40288 -17.08357 -16.80387 -16.65853 -15.89550 -15.59025 -15.13888 -14.72154 -14.58805 -14.09017 -13.82298 -13.72508 -13.68074 -13.57781 -13.41219 -13.22061 -12.92270 -12.73527 -12.65087 -12.03466 -12.00562 -11.86213 -11.58892 -11.51841 -11.33718 -11.09840 -10.72126 -10.04220 -9.67750 -9.33411 -8.89228 -7.85943 -5.20736 -0.19599 0.62385 0.96834 1.03288 1.44664 1.46709 1.55149 2.01351 2.27896 2.48962 3.31839 3.37856 3.47656 3.68962 3.83038 3.93361 3.95155 4.18973 4.26633 4.41210 4.49140 4.52380 4.55208 4.76160 4.79920 4.86788 4.89938 5.01601 5.10018 5.14095 5.26534 5.31829 5.37202 5.47552 5.59723 5.77285 6.18985 6.46089 7.03527 7.09080 7.77614 8.40767 9.24534 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026818 B = 0.003830 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.836807 B = 7308.394333 C = 7479.828302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.976 3.024 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.627 5.627 10 C 0.139 3.861 11 C -0.094 4.094 12 H 0.136 0.864 13 C 0.102 3.898 14 N -0.601 5.601 15 C 0.580 3.420 16 O -0.597 6.597 17 C -0.180 4.180 18 C -0.142 4.142 19 C -0.223 4.223 20 S 0.236 5.764 21 C -0.204 4.204 22 C 0.125 3.875 23 C -0.110 4.110 24 H 0.121 0.879 25 C 0.197 3.803 26 H 0.246 0.754 27 H 0.048 0.952 28 H 0.004 0.996 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.187 0.813 32 H 0.205 0.795 33 H 0.163 0.837 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.006 0.994 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -23.011 0.286 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.354 5.354 10 C 0.014 3.986 11 C -0.114 4.114 12 H 0.154 0.846 13 C -0.020 4.020 14 N -0.332 5.332 15 C 0.370 3.630 16 O -0.480 6.480 17 C -0.198 4.198 18 C -0.169 4.169 19 C -0.357 4.357 20 S 0.502 5.498 21 C -0.343 4.343 22 C 0.002 3.998 23 C -0.129 4.129 24 H 0.139 0.861 25 C 0.072 3.928 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.022 0.978 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.204 0.796 32 H 0.222 0.778 33 H 0.181 0.819 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.024 0.976 37 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.705 -23.751 -1.189 24.455 hybrid contribution -0.807 2.935 0.287 3.057 sum 4.897 -20.816 -0.902 21.403 Atomic orbital electron populations 1.70165 1.06239 1.25225 1.58361 1.25614 0.96600 1.00952 1.02652 0.85108 0.77875 0.79307 0.77229 1.21903 1.21895 1.19037 1.19458 0.90995 0.83907 1.42878 0.90086 1.44934 1.02253 1.01197 1.87016 1.21447 0.95593 0.84640 0.96949 1.23027 0.93434 0.93440 1.01454 0.84636 1.22737 0.98370 0.97557 0.83326 1.48109 1.43587 1.29404 1.12128 1.17892 0.81877 0.82355 0.80912 1.90742 1.48421 1.71126 1.37695 1.20209 1.04484 0.99977 0.95113 1.22217 0.97483 0.96955 1.00245 1.26015 1.06621 1.03370 0.99731 1.82822 1.37428 1.26822 1.02745 1.25759 1.04001 1.02084 1.02481 1.21728 0.94350 0.86791 0.96898 1.22991 0.99579 0.96051 0.94324 0.86118 1.21017 0.83635 0.90150 0.97999 0.94434 0.93348 0.97837 0.87046 0.87831 0.79648 0.77785 0.81896 0.95215 0.91333 0.97579 0.96114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 10.25 21.65 0.22 -57.60 16 2 C -0.07 -3.76 5.48 84.86 0.47 -3.29 16 3 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.77 10.25 84.03 0.86 -12.91 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -32.11 3.42 -693.54 -2.37 -34.49 16 10 C 0.14 5.40 6.48 86.65 0.56 5.96 16 11 C -0.09 -2.68 4.17 -9.32 -0.04 -2.72 16 12 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 13 C 0.10 2.31 4.17 86.65 0.36 2.67 16 14 N -0.60 -19.29 3.30 -821.84 -2.71 -22.01 16 15 C 0.58 20.27 7.80 86.59 0.68 20.94 16 16 O -0.60 -25.98 17.06 -4.15 -0.07 -26.05 16 17 C -0.18 -4.73 5.94 -19.87 -0.12 -4.84 16 18 C -0.14 -2.52 8.68 22.67 0.20 -2.32 16 19 C -0.22 -2.84 11.12 66.64 0.74 -2.10 16 20 S 0.24 3.34 23.02 -56.49 -1.30 2.04 16 21 C -0.20 -4.74 10.53 67.30 0.71 -4.03 16 22 C 0.13 4.63 6.21 86.59 0.54 5.17 16 23 C -0.11 -3.81 3.97 -9.49 -0.04 -3.84 16 24 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 25 C 0.20 9.62 4.84 86.29 0.42 10.04 16 26 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.00 0.16 7.71 -2.39 -0.02 0.14 16 29 H 0.11 1.69 7.57 -2.39 -0.02 1.68 16 30 H 0.10 2.06 5.49 -2.39 -0.01 2.04 16 31 H 0.19 2.51 4.06 -2.91 -0.01 2.50 16 32 H 0.21 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.16 3.98 8.03 -2.91 -0.02 3.96 16 34 H 0.03 1.36 7.30 -2.39 -0.02 1.34 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.01 0.34 6.76 -2.38 -0.02 0.33 16 37 H 0.02 1.12 7.41 -2.39 -0.02 1.10 16 Total: -1.00 -77.68 308.68 2.21 -75.47 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.09 Total: 5.48 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.33 Total: 8.71 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.86 Total: -114.10 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.07 Total: -26.05 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.30 Total: 2.04 kcal Total: -77.68 2.21 -75.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048661673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.813 kcal (2) G-P(sol) polarization free energy of solvation -77.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds