Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46931 * 299.99572 * 3 2 1 6 6 H 1.48499 * 109.47273 * 59.99259 * 3 2 1 7 7 C 1.38818 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00439 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99452 * 0.02562 * 7 2 1 10 10 C 1.47540 * 125.66104 * 359.97438 * 9 7 2 11 11 C 1.55157 * 105.00870 * 203.91703 * 10 9 7 12 12 C 1.53916 * 101.43416 * 324.38046 * 11 10 9 13 13 C 1.52565 * 115.96873 * 163.60161 * 12 11 10 14 14 N 1.47842 * 85.66105 * 94.98237 * 13 12 11 15 15 C 1.34777 * 134.36506 * 203.62422 * 14 13 12 16 16 O 1.21703 * 120.00304 * 180.02562 * 15 14 13 17 17 C 1.46588 * 119.99616 * 0.02562 * 15 14 13 18 18 C 1.36648 * 125.45487 * 179.97438 * 17 15 14 19 19 C 1.37477 * 113.29544 * 179.97438 * 18 17 15 20 20 C 1.33819 * 115.10067 * 0.02562 * 19 18 17 21 21 S 1.70617 * 110.95125 * 359.72137 * 20 19 18 22 22 C 1.47849 * 91.27665 * 23.63067 * 14 13 12 23 23 C 1.47365 * 125.65578 * 180.02562 * 9 7 2 24 24 H 0.97002 * 120.00335 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.33340 * 322.80029 * 10 9 7 26 26 H 1.09002 * 110.33204 * 84.93469 * 10 9 7 27 27 H 1.09000 * 111.03688 * 82.39851 * 11 10 9 28 28 H 1.08998 * 111.03622 * 206.32702 * 11 10 9 29 29 H 1.09002 * 113.84053 * 209.16925 * 13 12 11 30 30 H 1.09003 * 113.83754 * 340.79610 * 13 12 11 31 31 H 1.08002 * 123.35794 * 0.02562 * 18 17 15 32 32 H 1.08004 * 122.44975 * 179.97438 * 19 18 17 33 33 H 1.07997 * 124.52355 * 179.97438 * 20 19 18 34 34 H 1.08999 * 113.84012 * 222.18886 * 22 14 13 35 35 H 1.08998 * 113.95973 * 90.56574 * 22 14 13 36 36 H 1.09002 * 109.98231 * 297.31124 * 23 9 7 37 37 H 1.09004 * 109.98723 * 58.57314 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1426 -2.5336 0.0005 11 6 -0.4073 -3.9365 0.6081 12 6 0.7831 -4.7389 0.0532 13 6 1.0744 -6.0669 0.7454 14 7 0.2522 -6.6752 -0.3222 15 6 -0.4558 -7.8168 -0.4316 16 8 -1.0535 -8.0659 -1.4621 17 6 -0.5060 -8.7584 0.6908 18 6 -1.1867 -9.9432 0.7016 19 6 -1.0622 -10.6310 1.8854 20 6 -0.3067 -10.0318 2.8133 21 16 0.3060 -8.5478 2.2360 22 6 0.5162 -5.5323 -1.2223 23 6 1.9331 -3.7307 0.0016 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5998 -1.7607 0.6185 26 1 -0.5284 -2.4811 -1.0176 27 1 -0.3819 -3.9023 1.6973 28 1 -1.3537 -4.3443 0.2531 29 1 2.1240 -6.3593 0.7138 30 1 0.6368 -6.1505 1.7402 31 1 -1.7643 -10.3040 -0.1367 32 1 -1.5398 -11.5848 2.0545 33 1 -0.1078 -10.4357 3.7950 34 1 -0.3606 -5.1954 -1.7753 35 1 1.3953 -5.6601 -1.8538 36 1 2.5155 -3.8767 -0.9081 37 1 2.5726 -3.8496 0.8763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072431102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = 69.679700 kcal Electronic energy + Delta-G solvation = -20819.931239 eV Core-core repulsion = 17691.290683 eV Total energy + Delta-G solvation = -3128.640557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61235 -38.70292 -37.30422 -35.62814 -32.26881 -30.50163 -29.29276 -28.52542 -26.44591 -25.92984 -24.61207 -23.50803 -20.83982 -20.29200 -19.28639 -18.41595 -17.87607 -16.82153 -16.23679 -15.88120 -15.64309 -15.08502 -14.71441 -14.23557 -13.86255 -13.72600 -13.15313 -12.98584 -12.91989 -12.50104 -12.48539 -12.20603 -12.00985 -11.74181 -11.36671 -11.02974 -10.93142 -10.79766 -10.49327 -10.11230 -10.05558 -9.90885 -9.82125 -9.57174 -9.10739 -8.78898 -8.68428 -8.57529 -6.87591 -5.68153 -3.10106 0.36357 1.32068 1.74159 2.24267 2.76633 3.20154 3.38401 3.43977 3.46496 4.35810 4.44530 4.59358 4.76958 4.95758 5.09446 5.14796 5.27642 5.40082 5.43834 5.49091 5.59685 5.65624 5.80742 5.82959 5.85772 6.04246 6.11936 6.15259 6.24430 6.46512 6.54239 6.64641 6.69580 7.47986 7.59563 7.69034 7.82389 8.11546 8.32189 9.18561 9.79278 10.43669 11.35861 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037005 B = 0.003482 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.463033 B = 8038.750912 C = 8332.239719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.154 3.846 11 C -0.120 4.120 12 C -0.099 4.099 13 C 0.106 3.894 14 N -0.637 5.637 15 C 0.607 3.393 16 O -0.538 6.538 17 C -0.255 4.255 18 C -0.064 4.064 19 C -0.150 4.150 20 C -0.246 4.246 21 S 0.216 5.784 22 C 0.130 3.870 23 C 0.152 3.848 24 H 0.252 0.748 25 H 0.107 0.893 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.027 0.973 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 -18.589 6.008 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.029 3.971 11 C -0.159 4.159 12 C -0.100 4.100 13 C -0.018 4.018 14 N -0.371 5.371 15 C 0.397 3.603 16 O -0.417 6.417 17 C -0.375 4.375 18 C -0.097 4.097 19 C -0.182 4.182 20 C -0.383 4.383 21 S 0.483 5.517 22 C 0.009 3.991 23 C 0.025 3.975 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.184 0.816 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.958 -17.555 6.077 18.602 hybrid contribution -0.464 -0.551 -0.495 0.874 sum 0.494 -18.106 5.582 18.953 Atomic orbital electron populations 1.69799 1.04902 1.24726 1.57542 1.24790 0.95716 0.97740 1.02368 0.86005 0.78648 0.83615 0.77247 1.20517 1.21777 1.21752 1.19114 0.90538 0.82342 1.43127 0.90350 1.44586 1.01884 0.99563 1.86975 1.21984 0.84599 0.92102 0.98394 1.22737 0.94694 0.98316 1.00156 1.22460 0.99651 0.92998 0.94896 1.23296 0.95619 0.90551 0.92314 1.50025 1.48506 1.19162 1.19427 1.16566 0.79072 0.78883 0.85797 1.90821 1.46037 1.74959 1.29880 1.24655 1.10913 1.02148 0.99821 1.20786 0.97872 0.92309 0.98731 1.20017 1.02599 1.02457 0.93078 1.25522 1.05613 1.02026 1.05158 1.83334 1.46264 1.16661 1.05412 1.23101 1.01425 0.80596 0.94002 1.20989 0.92593 0.85489 0.98425 0.93738 0.87513 0.96808 0.91457 0.92106 0.88981 0.89785 0.83036 0.83979 0.81618 0.89562 0.89369 0.95484 0.95047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.09 55.49 0.56 -25.72 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.22 -5.99 10.28 -15.06 -0.15 -6.15 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.72 3.41 -170.34 -0.58 -15.30 16 10 C 0.15 3.59 5.90 -2.33 -0.01 3.58 16 11 C -0.12 -2.18 6.42 -25.11 -0.16 -2.34 16 12 C -0.10 -1.59 0.97 -154.68 -0.15 -1.74 16 13 C 0.11 1.37 6.58 -3.53 -0.02 1.34 16 14 N -0.64 -9.50 3.62 -187.28 -0.68 -10.18 16 15 C 0.61 9.78 8.01 -12.89 -0.10 9.67 16 16 O -0.54 -10.39 17.57 5.19 0.09 -10.30 16 17 C -0.25 -3.34 6.44 -36.79 -0.24 -3.58 16 18 C -0.06 -0.74 10.01 -40.43 -0.40 -1.14 16 19 C -0.15 -1.38 10.15 -41.41 -0.42 -1.80 16 20 C -0.25 -2.11 10.92 29.18 0.32 -1.79 16 21 S 0.22 2.16 19.77 -107.50 -2.13 0.03 16 22 C 0.13 2.02 8.08 -3.53 -0.03 1.99 16 23 C 0.15 2.88 6.75 -3.56 -0.02 2.85 16 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.11 2.83 5.89 -51.93 -0.31 2.52 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.09 1.43 8.12 -51.93 -0.42 1.01 16 35 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 36 H 0.03 0.51 7.86 -51.93 -0.41 0.10 16 37 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 318.56 15.07 4.80 4.80 Total: -1.00 -31.58 318.56 -9.26 -40.84 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.81 Total: -1.24 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.50 Total: 0.51 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.70 Total: -51.20 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.13 Total: 0.03 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.58 -9.26 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072431102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.518 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds