Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46931 * 299.99572 * 3 2 1 6 6 H 1.48499 * 109.47273 * 59.99259 * 3 2 1 7 7 C 1.38818 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00439 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99452 * 0.02562 * 7 2 1 10 10 C 1.47540 * 125.66104 * 359.97438 * 9 7 2 11 11 C 1.55157 * 105.00870 * 203.91703 * 10 9 7 12 12 C 1.53916 * 101.43416 * 324.38046 * 11 10 9 13 13 C 1.52565 * 115.96873 * 163.60161 * 12 11 10 14 14 N 1.47842 * 85.66105 * 94.98237 * 13 12 11 15 15 C 1.34777 * 134.36506 * 203.62422 * 14 13 12 16 16 O 1.21703 * 120.00304 * 180.02562 * 15 14 13 17 17 C 1.46588 * 119.99616 * 0.02562 * 15 14 13 18 18 C 1.36648 * 125.45487 * 179.97438 * 17 15 14 19 19 C 1.37477 * 113.29544 * 179.97438 * 18 17 15 20 20 C 1.33819 * 115.10067 * 0.02562 * 19 18 17 21 21 S 1.70617 * 110.95125 * 359.72137 * 20 19 18 22 22 C 1.47849 * 91.27665 * 23.63067 * 14 13 12 23 23 C 1.47365 * 125.65578 * 180.02562 * 9 7 2 24 24 H 0.97002 * 120.00335 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.33340 * 322.80029 * 10 9 7 26 26 H 1.09002 * 110.33204 * 84.93469 * 10 9 7 27 27 H 1.09000 * 111.03688 * 82.39851 * 11 10 9 28 28 H 1.08998 * 111.03622 * 206.32702 * 11 10 9 29 29 H 1.09002 * 113.84053 * 209.16925 * 13 12 11 30 30 H 1.09003 * 113.83754 * 340.79610 * 13 12 11 31 31 H 1.08002 * 123.35794 * 0.02562 * 18 17 15 32 32 H 1.08004 * 122.44975 * 179.97438 * 19 18 17 33 33 H 1.07997 * 124.52355 * 179.97438 * 20 19 18 34 34 H 1.08999 * 113.84012 * 222.18886 * 22 14 13 35 35 H 1.08998 * 113.95973 * 90.56574 * 22 14 13 36 36 H 1.09002 * 109.98231 * 297.31124 * 23 9 7 37 37 H 1.09004 * 109.98723 * 58.57314 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1426 -2.5336 0.0005 11 6 -0.4073 -3.9365 0.6081 12 6 0.7831 -4.7389 0.0532 13 6 1.0744 -6.0669 0.7454 14 7 0.2522 -6.6752 -0.3222 15 6 -0.4558 -7.8168 -0.4316 16 8 -1.0535 -8.0659 -1.4621 17 6 -0.5060 -8.7584 0.6908 18 6 -1.1867 -9.9432 0.7016 19 6 -1.0622 -10.6310 1.8854 20 6 -0.3067 -10.0318 2.8133 21 16 0.3060 -8.5478 2.2360 22 6 0.5162 -5.5323 -1.2223 23 6 1.9331 -3.7307 0.0016 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5998 -1.7607 0.6185 26 1 -0.5284 -2.4811 -1.0176 27 1 -0.3819 -3.9023 1.6973 28 1 -1.3537 -4.3443 0.2531 29 1 2.1240 -6.3593 0.7138 30 1 0.6368 -6.1505 1.7402 31 1 -1.7643 -10.3040 -0.1367 32 1 -1.5398 -11.5848 2.0545 33 1 -0.1078 -10.4357 3.7950 34 1 -0.3606 -5.1954 -1.7753 35 1 1.3953 -5.6601 -1.8538 36 1 2.5155 -3.8767 -0.9081 37 1 2.5726 -3.8496 0.8763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072431102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = 50.147930 kcal Electronic energy + Delta-G solvation = -20820.778200 eV Core-core repulsion = 17691.290683 eV Total energy + Delta-G solvation = -3129.487518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87994 -39.86217 -38.28040 -37.24149 -34.10172 -31.75818 -30.79509 -29.89133 -27.64111 -27.41459 -25.87325 -24.90360 -22.25111 -21.71723 -20.18018 -19.75814 -18.95834 -18.65965 -17.39879 -16.94175 -16.81274 -16.72729 -16.11452 -15.55102 -15.45711 -14.99804 -14.34541 -14.07099 -13.89140 -13.79947 -13.68863 -13.55572 -13.36029 -13.18887 -12.85259 -12.84437 -12.57881 -12.04858 -11.95633 -11.80878 -11.76577 -11.54146 -11.29460 -11.05323 -10.71702 -10.05976 -9.67322 -9.51652 -8.84877 -7.73688 -5.17404 -0.48180 0.52054 0.98941 1.41329 1.50411 1.50932 1.61109 1.62756 2.13350 2.52990 3.23897 3.33083 3.43419 3.62816 3.72729 4.04249 4.15544 4.17515 4.30982 4.37583 4.43067 4.52663 4.58392 4.63186 4.70907 4.81956 4.88452 5.04730 5.07846 5.16100 5.20878 5.26174 5.38323 5.51939 5.63465 5.84392 6.33321 6.53330 6.93138 7.14085 7.81916 8.45800 9.28749 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037005 B = 0.003482 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.463033 B = 8038.750912 C = 8332.239719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.087 0.913 9 N -0.626 5.626 10 C 0.158 3.842 11 C -0.104 4.104 12 C -0.092 4.092 13 C 0.121 3.879 14 N -0.637 5.637 15 C 0.603 3.397 16 O -0.586 6.586 17 C -0.299 4.299 18 C -0.062 4.062 19 C -0.159 4.159 20 C -0.227 4.227 21 S 0.243 5.757 22 C 0.125 3.875 23 C 0.149 3.851 24 H 0.245 0.755 25 H 0.072 0.928 26 H -0.018 1.018 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.034 0.966 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 -20.689 8.187 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.220 1.220 7 C -0.360 4.360 8 H 0.104 0.896 9 N -0.352 5.352 10 C 0.033 3.967 11 C -0.143 4.143 12 C -0.094 4.094 13 C -0.001 4.001 14 N -0.371 5.371 15 C 0.395 3.605 16 O -0.469 6.469 17 C -0.419 4.419 18 C -0.097 4.097 19 C -0.189 4.189 20 C -0.365 4.365 21 S 0.511 5.489 22 C 0.004 3.996 23 C 0.024 3.976 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.000 1.000 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.119 0.881 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.217 0.783 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.052 0.948 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.679 -19.676 8.283 21.516 hybrid contribution -0.980 0.031 -1.139 1.503 sum 1.699 -19.645 7.144 20.973 Atomic orbital electron populations 1.70061 1.06286 1.24786 1.59013 1.25611 0.96541 1.00973 1.03070 0.85007 0.78285 0.79562 0.76461 1.18799 1.22514 1.21990 1.19519 0.91168 0.83548 1.41794 0.89569 1.44876 1.02415 1.01055 1.86875 1.21699 0.84424 0.94324 0.96254 1.22503 0.95948 0.95329 1.00504 1.22288 0.97440 0.93575 0.96067 1.23393 0.97185 0.87268 0.92284 1.50018 1.48545 1.18760 1.19740 1.17013 0.78203 0.79189 0.86124 1.90780 1.48001 1.76130 1.31979 1.24489 1.13943 1.02537 1.00906 1.21008 0.97033 0.92073 0.99590 1.20221 1.03125 1.03483 0.92095 1.25965 1.03617 1.00748 1.06131 1.83091 1.45373 1.17447 1.03012 1.23118 1.01350 0.81104 0.94074 1.21171 0.93584 0.83522 0.99323 0.94540 0.91004 0.99998 0.90270 0.91697 0.85898 0.88121 0.83723 0.81349 0.78292 0.91505 0.87755 0.94772 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.24 10.09 21.65 0.22 -56.02 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 3 Si 0.98 44.86 29.55 68.60 2.03 46.89 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.23 -12.46 10.28 84.03 0.86 -11.60 16 8 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -30.65 3.41 -692.85 -2.36 -33.01 16 10 C 0.16 7.64 5.90 86.92 0.51 8.15 16 11 C -0.10 -3.75 6.42 31.64 0.20 -3.55 16 12 C -0.09 -2.83 0.97 -52.08 -0.05 -2.88 16 13 C 0.12 2.76 6.58 85.98 0.57 3.33 16 14 N -0.64 -18.23 3.62 -864.63 -3.13 -21.35 16 15 C 0.60 19.21 8.01 86.42 0.69 19.91 16 16 O -0.59 -23.29 17.57 -4.36 -0.08 -23.36 16 17 C -0.30 -7.40 6.44 24.08 0.16 -7.24 16 18 C -0.06 -1.35 10.01 21.72 0.22 -1.13 16 19 C -0.16 -2.40 10.15 21.09 0.21 -2.18 16 20 C -0.23 -2.92 10.92 66.81 0.73 -2.19 16 21 S 0.24 4.01 19.77 -56.49 -1.12 2.89 16 22 C 0.13 3.82 8.08 85.98 0.69 4.52 16 23 C 0.15 5.42 6.75 86.22 0.58 6.01 16 24 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 25 H 0.07 3.99 5.89 -2.39 -0.01 3.98 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.06 2.27 8.06 -2.39 -0.02 2.25 16 29 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.10 2.01 6.47 -2.39 -0.02 1.99 16 31 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 35 H 0.10 2.84 8.00 -2.39 -0.02 2.82 16 36 H 0.03 1.21 7.86 -2.39 -0.02 1.20 16 37 H 0.05 1.66 8.09 -2.39 -0.02 1.64 16 Total: -1.00 -71.52 318.56 2.48 -69.04 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.07 Total: 7.20 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.85 Total: 7.73 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -5.27 Total: -110.38 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.08 Total: -23.36 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.12 Total: 2.89 kcal Total: -71.52 2.48 -69.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072431102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.184 kcal (2) G-P(sol) polarization free energy of solvation -71.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds