Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00143 * 2 1 4 4 H 1.48504 * 109.47005 * 269.99804 * 3 2 1 5 5 H 1.48501 * 109.47290 * 29.99940 * 3 2 1 6 6 H 1.48505 * 109.47141 * 149.99801 * 3 2 1 7 7 C 1.38822 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00012 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99508 * 359.97438 * 7 2 1 10 10 C 1.46651 * 125.28563 * 180.02562 * 9 7 2 11 11 C 1.53517 * 107.04940 * 197.35974 * 10 9 7 12 12 H 1.08996 * 112.80693 * 211.53399 * 11 10 9 13 13 C 1.54789 * 109.68763 * 84.08704 * 11 10 9 14 14 C 1.55160 * 101.35856 * 212.75582 * 13 11 10 15 15 N 1.47343 * 104.79449 * 37.54218 * 14 13 11 16 16 C 1.34780 * 125.52444 * 156.68757 * 15 14 13 17 17 O 1.21701 * 120.00046 * 185.19196 * 16 15 14 18 18 C 1.46578 * 119.99759 * 4.91748 * 16 15 14 19 19 C 1.36651 * 125.45981 * 186.51986 * 18 16 15 20 20 C 1.37468 * 113.29938 * 179.79892 * 19 18 16 21 21 C 1.33819 * 115.10111 * 0.49084 * 20 19 18 22 22 S 1.70621 * 110.95325 * 359.72832 * 21 20 19 23 23 C 1.47259 * 108.95153 * 336.42251 * 15 14 13 24 24 H 1.09005 * 111.94286 * 235.83237 * 23 15 14 25 25 C 1.46494 * 125.28993 * 0.02960 * 9 7 2 26 26 H 0.97001 * 120.00012 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.91796 * 316.71050 * 10 9 7 28 28 H 1.08990 * 109.91705 * 78.00867 * 10 9 7 29 29 H 1.09007 * 111.02873 * 330.96690 * 13 11 10 30 30 H 1.09006 * 111.03157 * 94.83945 * 13 11 10 31 31 H 1.09007 * 110.48259 * 278.68179 * 14 13 11 32 32 H 1.08999 * 110.32750 * 156.32685 * 14 13 11 33 33 H 1.07998 * 123.34759 * 0.02562 * 19 18 16 34 34 H 1.08004 * 122.44884 * 180.19700 * 20 19 18 35 35 H 1.08000 * 124.52522 * 179.72480 * 21 20 19 36 36 H 1.09000 * 109.71842 * 58.33517 * 25 9 7 37 37 H 1.09002 * 109.71628 * 297.78525 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.9386 -3.7203 0.0028 11 6 0.8542 -4.7152 -0.4342 12 1 0.9732 -5.6976 0.0226 13 6 0.7806 -4.7607 -1.9797 14 6 -0.7303 -5.0321 -2.2058 15 7 -1.4136 -4.2490 -1.1614 16 6 -2.6889 -3.8162 -1.2155 17 8 -3.1246 -3.0952 -0.3371 18 6 -3.5492 -4.2089 -2.3354 19 6 -4.8106 -3.7382 -2.5690 20 6 -5.3906 -4.2727 -3.6949 21 6 -4.6363 -5.1586 -4.3560 22 16 -3.1264 -5.3669 -3.5892 23 6 -0.4794 -4.0214 -0.0461 24 1 -0.8822 -4.3779 0.9019 25 6 -0.1332 -2.5230 0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 2.7715 -3.7464 -0.6999 28 1 2.2872 -3.9677 1.0054 29 1 1.0793 -3.8065 -2.4138 30 1 1.3867 -5.5753 -2.3764 31 1 -0.9490 -6.0935 -2.0880 32 1 -1.0326 -4.6895 -3.1954 33 1 -5.3015 -3.0152 -1.9344 34 1 -6.3843 -4.0012 -4.0195 35 1 -4.9424 -5.6731 -5.2549 36 1 -0.5489 -2.0214 -0.8722 37 1 -0.5435 -2.0798 0.9090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075509118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = 42.894906 kcal Electronic energy + Delta-G solvation = -21573.079722 eV Core-core repulsion = 18443.277689 eV Total energy + Delta-G solvation = -3129.802032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10612 -38.28387 -36.98510 -34.91803 -32.29410 -30.65920 -30.01532 -28.44789 -26.83274 -24.89848 -24.38497 -22.65793 -21.22959 -20.06754 -19.12829 -18.93674 -17.76792 -16.79261 -15.92015 -15.78465 -15.47803 -14.68681 -14.50426 -14.18552 -13.56770 -13.43999 -13.01604 -12.88627 -12.64942 -12.54659 -12.25541 -12.18109 -11.75593 -11.49914 -11.19060 -10.97686 -10.96782 -10.75097 -10.38597 -10.19161 -10.03068 -9.85041 -9.68808 -9.58152 -8.85934 -8.59071 -8.52661 -8.17212 -6.77075 -5.62696 -2.99882 0.58698 1.50807 1.92122 2.47611 3.23102 3.43557 3.47993 3.51121 3.54658 4.53858 4.61035 4.79044 4.92007 5.08881 5.21874 5.30556 5.44286 5.49469 5.52282 5.57493 5.68179 5.81281 5.91992 5.95998 6.04755 6.12963 6.23301 6.34508 6.37192 6.59650 6.60900 6.63394 6.86376 7.61106 7.67354 7.91824 7.96606 8.34635 8.52186 9.27931 9.88909 10.51606 11.46453 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.005077 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.785325 B = 5513.878518 C = 6238.256992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.090 0.910 13 C -0.115 4.115 14 C 0.089 3.911 15 N -0.603 5.603 16 C 0.597 3.403 17 O -0.514 6.514 18 C -0.247 4.247 19 C -0.066 4.066 20 C -0.147 4.147 21 C -0.257 4.257 22 S 0.208 5.792 23 C 0.116 3.884 24 H 0.083 0.917 25 C 0.179 3.821 26 H 0.253 0.747 27 H 0.039 0.961 28 H 0.017 0.983 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.057 0.943 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 -15.006 -8.972 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.130 4.130 12 H 0.108 0.892 13 C -0.153 4.153 14 C -0.035 4.035 15 N -0.337 5.337 16 C 0.384 3.616 17 O -0.391 6.391 18 C -0.367 4.367 19 C -0.099 4.099 20 C -0.178 4.178 21 C -0.395 4.395 22 S 0.475 5.525 23 C 0.013 3.987 24 H 0.101 0.899 25 C 0.053 3.947 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.075 0.925 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.917 -15.247 -8.816 18.286 hybrid contribution -1.062 1.744 0.051 2.042 sum -5.979 -13.504 -8.765 17.173 Atomic orbital electron populations 1.70010 1.04743 1.25084 1.56106 1.24856 0.95668 0.97711 1.02008 0.86150 0.78570 0.83697 0.77488 1.21667 1.21681 1.20677 1.18996 0.90343 0.82253 1.44774 0.90364 1.44143 1.01448 0.99965 1.87398 1.21067 0.93803 0.85721 0.97569 1.22969 0.95556 0.98945 0.95544 0.89190 1.22755 0.93249 1.03282 0.95979 1.22501 0.94047 0.95462 0.91492 1.48401 1.10747 1.54246 1.20342 1.16526 0.80118 0.80248 0.84715 1.90883 1.73520 1.35485 1.39196 1.24764 1.00697 1.08160 1.03113 1.20797 0.92800 0.99355 0.96904 1.20001 1.01984 0.99515 0.96323 1.25579 1.01383 1.05861 1.06631 1.83280 1.12547 1.39205 1.17438 1.22925 0.87217 1.00249 0.88337 0.89942 1.21281 0.84070 0.87142 1.02185 0.93649 0.94284 0.96486 0.89266 0.90219 0.91231 0.90619 0.82939 0.84214 0.81949 0.92469 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 10.23 55.49 0.57 -27.62 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.64 10.25 -15.06 -0.15 -6.79 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.52 3.37 -172.28 -0.58 -16.10 16 10 C 0.15 2.90 6.50 -3.69 -0.02 2.87 16 11 C -0.11 -1.80 3.97 -88.22 -0.35 -2.15 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.11 -1.64 6.33 -24.65 -0.16 -1.80 16 14 C 0.09 1.24 5.26 -2.44 -0.01 1.22 16 15 N -0.60 -10.99 2.83 -163.24 -0.46 -11.45 16 16 C 0.60 11.74 7.54 -12.90 -0.10 11.64 16 17 O -0.51 -12.23 16.82 5.19 0.09 -12.14 16 18 C -0.25 -3.88 6.33 -36.79 -0.23 -4.11 16 19 C -0.07 -0.93 10.02 -40.44 -0.41 -1.34 16 20 C -0.15 -1.65 10.15 -41.41 -0.42 -2.08 16 21 C -0.26 -2.62 10.92 29.18 0.32 -2.31 16 22 S 0.21 2.35 18.66 -107.50 -2.01 0.34 16 23 C 0.12 2.30 3.84 -65.87 -0.25 2.05 16 24 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 25 C 0.18 4.60 4.51 -3.60 -0.02 4.58 16 26 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.78 7.91 -51.92 -0.41 0.37 16 32 H 0.08 0.99 5.79 -39.48 -0.23 0.76 16 33 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.06 1.68 6.89 -51.93 -0.36 1.32 16 37 H 0.05 1.36 7.51 -51.93 -0.39 0.97 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -34.25 310.77 -9.35 -43.60 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.72 Total: -0.44 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.90 Total: 1.54 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.47 Total: -55.17 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.01 Total: 0.34 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.25 -9.35 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075509118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.493 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds