Wall clock time and date at job start Tue Mar 31 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99564 * 2 1 4 4 H 1.48500 * 109.47161 * 274.71556 * 3 2 1 5 5 H 1.48497 * 109.47326 * 34.72094 * 3 2 1 6 6 H 1.48503 * 109.46894 * 154.71926 * 3 2 1 7 7 C 1.38806 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 173.98682 * 7 2 1 9 9 N 1.36938 * 119.99914 * 353.99558 * 7 2 1 10 10 C 1.46647 * 125.28772 * 186.32732 * 9 7 2 11 11 C 1.53519 * 107.04903 * 197.39909 * 10 9 7 12 12 H 1.09002 * 112.80607 * 211.53845 * 11 10 9 13 13 C 1.54785 * 109.68521 * 84.82827 * 11 10 9 14 14 C 1.54959 * 101.45411 * 212.92442 * 13 11 10 15 15 N 1.47341 * 104.90026 * 37.25133 * 14 13 11 16 16 C 1.34779 * 125.52104 * 156.77437 * 15 14 13 17 17 O 1.21645 * 119.99916 * 186.04265 * 16 15 14 18 18 C 1.47184 * 120.00275 * 6.04620 * 16 15 14 19 19 C 1.44438 * 123.45765 * 7.51831 * 18 16 15 20 20 C 1.32767 * 113.08093 * 179.80904 * 19 18 16 21 21 S 1.75503 * 110.57805 * 0.44184 * 20 19 18 22 22 C 1.36009 * 123.46562 * 187.81254 * 18 16 15 23 23 C 1.48620 * 109.07325 * 336.14494 * 15 14 13 24 24 H 1.09001 * 113.53892 * 236.99732 * 23 15 14 25 25 C 1.46492 * 125.28906 * 6.34313 * 9 7 2 26 26 H 0.97003 * 119.99934 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.91558 * 316.74333 * 10 9 7 28 28 H 1.08991 * 109.92336 * 78.04878 * 10 9 7 29 29 H 1.08997 * 111.03517 * 330.96355 * 13 11 10 30 30 H 1.09000 * 111.03048 * 94.84329 * 13 11 10 31 31 H 1.09000 * 110.35062 * 156.11296 * 14 13 11 32 32 H 1.09000 * 110.35063 * 278.29038 * 14 13 11 33 33 H 1.07993 * 123.45597 * 0.02562 * 19 18 16 34 34 H 1.08001 * 124.71255 * 180.14762 * 20 19 18 35 35 H 1.07998 * 124.58610 * 359.97438 * 22 18 16 36 36 H 1.08996 * 109.71502 * 297.74931 * 25 9 7 37 37 H 1.09002 * 109.71553 * 58.34167 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3979 2.1041 -1.3953 5 1 1.5010 2.6219 0.7974 6 1 3.5940 1.4136 0.5979 7 6 2.0103 -1.2021 0.0005 8 1 3.0858 -1.2047 -0.0974 9 7 1.3313 -2.3847 0.1251 10 6 1.9507 -3.7058 0.2714 11 6 0.8736 -4.7475 -0.0628 12 1 0.9948 -5.6750 0.4968 13 6 0.8220 -4.9714 -1.5935 14 6 -0.6836 -5.2667 -1.8107 15 7 -1.3841 -4.3744 -0.8705 16 6 -2.6589 -3.9540 -0.9921 17 8 -3.1042 -3.1300 -0.2159 18 6 -3.5122 -4.4919 -2.0639 19 6 -3.1163 -5.5813 -2.9259 20 6 -4.0452 -5.9028 -3.8183 21 16 -5.4511 -4.8665 -3.6461 22 6 -4.7520 -4.0106 -2.3484 23 6 -0.4644 -4.0237 0.2431 24 1 -0.8541 -4.2827 1.2275 25 6 -0.1267 -2.5267 0.1326 26 1 -0.4850 0.8401 0.0004 27 1 2.7877 -3.8022 -0.4202 28 1 2.2948 -3.8433 1.2964 29 1 1.1258 -4.0731 -2.1308 30 1 1.4345 -5.8247 -1.8848 31 1 -0.9707 -5.0371 -2.8368 32 1 -0.9024 -6.3094 -1.5808 33 1 -2.1640 -6.0849 -2.8497 34 1 -3.9472 -6.6894 -4.5518 35 1 -5.2289 -3.1964 -1.8230 36 1 -0.5438 -1.9918 0.9857 37 1 -0.5402 -2.1237 -0.7919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075527149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:22 Heat of formation + Delta-G solvation = 27.283079 kcal Electronic energy + Delta-G solvation = -21596.165317 eV Core-core repulsion = 18465.686305 eV Total energy + Delta-G solvation = -3130.479012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60901 -39.60923 -37.73108 -36.59551 -34.08028 -32.22797 -30.75585 -30.60213 -28.48018 -26.81268 -25.54199 -24.16767 -22.29285 -21.54402 -20.76131 -20.06712 -18.94522 -18.76733 -17.42278 -17.08717 -16.68726 -16.41530 -15.74521 -15.71122 -15.06788 -14.78169 -14.40210 -14.22739 -13.84442 -13.80433 -13.64772 -13.52570 -13.25486 -13.01908 -12.88158 -12.72856 -12.56690 -12.23028 -12.04208 -11.87492 -11.59819 -11.46858 -11.40153 -10.98100 -10.71911 -10.02282 -9.64532 -9.32660 -8.91103 -7.86494 -5.25494 -0.18944 0.61278 0.96971 1.06153 1.40170 1.43660 1.53347 2.02364 2.35243 2.46755 3.29522 3.40736 3.64221 3.73887 3.80060 3.94649 4.01981 4.29957 4.30832 4.42910 4.48477 4.52179 4.54341 4.70836 4.84637 4.89266 4.98564 5.07727 5.14383 5.17914 5.22114 5.30654 5.45940 5.50434 5.61157 5.78714 6.17404 6.58779 7.04762 7.17914 7.77049 8.38641 9.21955 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.004755 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.685610 B = 5886.514837 C = 6711.932971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.259 1.259 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.624 5.624 10 C 0.135 3.865 11 C -0.092 4.092 12 H 0.138 0.862 13 C -0.115 4.115 14 C 0.091 3.909 15 N -0.603 5.603 16 C 0.571 3.429 17 O -0.593 6.593 18 C -0.177 4.177 19 C -0.137 4.137 20 C -0.220 4.220 21 S 0.235 5.765 22 C -0.211 4.211 23 C 0.116 3.884 24 H 0.078 0.922 25 C 0.203 3.797 26 H 0.241 0.759 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.131 0.869 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.188 0.812 34 H 0.210 0.790 35 H 0.155 0.845 36 H -0.015 1.015 37 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -19.924 -10.362 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.183 1.183 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.112 4.112 12 H 0.155 0.845 13 C -0.152 4.152 14 C -0.030 4.030 15 N -0.336 5.336 16 C 0.361 3.639 17 O -0.475 6.475 18 C -0.195 4.195 19 C -0.164 4.164 20 C -0.355 4.355 21 S 0.501 5.499 22 C -0.350 4.350 23 C 0.012 3.988 24 H 0.096 0.904 25 C 0.077 3.923 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.149 0.851 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.205 0.795 34 H 0.226 0.774 35 H 0.173 0.827 36 H 0.003 0.997 37 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -7.016 -19.197 -10.754 23.095 hybrid contribution 1.320 2.039 1.428 2.818 sum -5.695 -17.157 -9.327 20.342 Atomic orbital electron populations 1.70353 1.06803 1.24964 1.58028 1.25832 0.96387 1.01675 1.02574 0.85043 0.77963 0.78898 0.77336 1.21230 1.22627 1.18344 1.19517 0.91672 0.83621 1.42375 0.89045 1.44464 1.01730 1.02887 1.85943 1.21377 0.95370 0.83833 0.98391 1.23023 0.90952 0.98641 0.98535 0.84469 1.22817 0.95620 1.03094 0.93706 1.23091 0.91697 0.94609 0.93582 1.48765 1.10577 1.48908 1.25306 1.18039 0.81071 0.80462 0.84336 1.90795 1.74675 1.34884 1.47164 1.20327 0.95743 1.02421 1.01043 1.22102 1.02861 0.96553 0.94906 1.26021 0.97009 1.06526 1.05925 1.82712 1.17767 1.24638 1.24821 1.25737 0.99316 1.05584 1.04366 1.22887 0.90239 0.95679 0.90009 0.90377 1.20729 0.84018 0.90850 0.96725 0.94940 0.92713 0.95850 0.93377 0.85102 0.88838 0.86869 0.79549 0.77361 0.82701 0.99679 0.98032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.92 10.28 21.65 0.22 -63.69 16 2 C -0.07 -4.40 5.48 84.86 0.47 -3.93 16 3 Si 0.98 48.45 29.56 68.60 2.03 50.48 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 5 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.24 -14.22 10.23 84.03 0.86 -13.36 16 8 H 0.09 4.97 7.84 -2.91 -0.02 4.94 16 9 N -0.62 -33.60 3.37 -698.99 -2.36 -35.96 16 10 C 0.14 5.31 6.51 86.53 0.56 5.87 16 11 C -0.09 -2.80 3.92 -9.27 -0.04 -2.83 16 12 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 13 C -0.11 -2.85 6.35 31.87 0.20 -2.64 16 14 C 0.09 2.13 4.95 86.89 0.43 2.56 16 15 N -0.60 -22.14 2.85 -785.23 -2.24 -24.38 16 16 C 0.57 23.88 7.54 86.59 0.65 24.54 16 17 O -0.59 -31.51 16.70 -4.17 -0.07 -31.58 16 18 C -0.18 -5.55 5.93 -19.87 -0.12 -5.67 16 19 C -0.14 -2.80 8.67 22.67 0.20 -2.60 16 20 C -0.22 -3.28 11.12 66.64 0.74 -2.54 16 21 S 0.24 4.13 23.02 -56.49 -1.30 2.82 16 22 C -0.21 -6.05 10.53 67.30 0.71 -5.35 16 23 C 0.12 4.78 3.95 45.61 0.18 4.96 16 24 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 25 C 0.20 11.38 4.51 86.67 0.39 11.77 16 26 H 0.24 15.94 8.31 -92.71 -0.77 15.16 16 27 H 0.05 1.98 7.94 -2.39 -0.02 1.96 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 30 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 2.00 5.97 -2.39 -0.01 1.98 16 32 H 0.11 1.69 7.46 -2.39 -0.02 1.67 16 33 H 0.19 2.80 4.19 -2.91 -0.01 2.79 16 34 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.16 4.88 8.03 -2.91 -0.02 4.86 16 36 H -0.01 -1.01 7.33 -2.39 -0.02 -1.03 16 37 H 0.00 0.10 7.07 -2.39 -0.02 0.08 16 Total: -1.00 -88.39 309.49 2.61 -85.79 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.09 Total: 5.75 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 5.24 Total: 10.78 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -4.37 Total: -124.04 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.07 Total: -31.58 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.30 Total: 2.82 kcal Total: -88.39 2.61 -85.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075527149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.070 kcal (2) G-P(sol) polarization free energy of solvation -88.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds