Wall clock time and date at job start Tue Mar 31 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47230 * 239.99968 * 3 2 1 5 5 H 1.48499 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47504 * 119.99996 * 3 2 1 7 7 C 1.38811 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00246 * 194.85536 * 7 2 1 9 9 N 1.36938 * 119.99565 * 14.85979 * 7 2 1 10 10 C 1.46620 * 119.88923 * 204.86898 * 9 7 2 11 11 C 1.53106 * 108.00834 * 237.32569 * 10 9 7 12 12 C 1.53005 * 109.45019 * 301.02843 * 11 10 9 13 13 H 1.09000 * 113.42317 * 274.22908 * 12 11 10 14 14 C 1.54649 * 110.83744 * 143.88500 * 12 11 10 15 15 N 1.47797 * 85.79272 * 270.22846 * 14 12 11 16 16 C 1.34780 * 135.01288 * 153.76908 * 15 14 12 17 17 O 1.21700 * 120.00450 * 179.97438 * 16 15 14 18 18 C 1.46584 * 119.99675 * 0.02562 * 16 15 14 19 19 C 1.36655 * 125.45730 * 179.97438 * 18 16 15 20 20 C 1.37468 * 113.29886 * 179.97438 * 19 18 16 21 21 C 1.33812 * 115.09914 * 0.02562 * 20 19 18 22 22 S 1.70616 * 110.95550 * 359.75907 * 21 20 19 23 23 C 1.48752 * 89.96494 * 333.87867 * 15 14 12 24 24 H 1.09004 * 111.44896 * 274.71994 * 23 15 14 25 25 C 1.45324 * 120.52311 * 23.37689 * 9 7 2 26 26 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.75375 * 117.70046 * 10 9 7 28 28 H 1.08999 * 109.75304 * 356.95535 * 10 9 7 29 29 H 1.09004 * 109.47337 * 61.02343 * 11 10 9 30 30 H 1.08998 * 109.47543 * 181.02657 * 11 10 9 31 31 H 1.09001 * 113.82068 * 24.45289 * 14 12 11 32 32 H 1.09003 * 113.81799 * 156.01048 * 14 12 11 33 33 H 1.08006 * 123.34908 * 359.93810 * 19 18 16 34 34 H 1.07999 * 122.45346 * 179.97438 * 20 19 18 35 35 H 1.08004 * 124.52469 * 180.02562 * 21 20 19 36 36 H 1.09002 * 107.69867 * 20.00433 * 25 9 7 37 37 H 1.08992 * 109.96203 * 261.86269 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0632 -1.2177 0.2403 9 7 1.3599 -2.3683 -0.3031 10 6 1.8762 -3.6451 0.1998 11 6 2.1390 -4.5559 -1.0025 12 6 0.8384 -4.7578 -1.7827 13 1 0.2233 -5.5707 -1.3966 14 6 1.1142 -4.8305 -3.3026 15 7 0.9338 -3.3636 -3.2951 16 6 1.3745 -2.3450 -4.0600 17 8 1.0464 -1.2023 -3.7997 18 6 2.2480 -2.6137 -5.2060 19 6 2.7573 -1.6700 -6.0530 20 6 3.5491 -2.1996 -7.0442 21 6 3.6844 -3.5305 -7.0123 22 16 2.8136 -4.2012 -5.7074 23 6 0.0667 -3.4773 -2.0919 24 1 -0.9676 -3.6874 -2.3644 25 6 0.1412 -2.3493 -1.0945 26 1 -0.4850 0.8401 -0.0004 27 1 1.1399 -4.1068 0.8577 28 1 2.8050 -3.4778 0.7452 29 1 2.8842 -4.0954 -1.6512 30 1 2.5074 -5.5207 -0.6539 31 1 2.1267 -5.1483 -3.5516 32 1 0.3481 -5.3654 -3.8640 33 1 2.5572 -0.6133 -5.9539 34 1 4.0263 -1.5865 -7.7944 35 1 4.2704 -4.1032 -7.7159 36 1 0.1113 -1.4027 -1.6341 37 1 -0.7285 -2.4033 -0.4397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084165124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:35 Heat of formation + Delta-G solvation = 69.893709 kcal Electronic energy + Delta-G solvation = -21901.842419 eV Core-core repulsion = 18773.211142 eV Total energy + Delta-G solvation = -3128.631276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27667 -38.24259 -36.79762 -35.17364 -32.12616 -30.31119 -30.09535 -28.47314 -26.95797 -24.70099 -23.88536 -22.90896 -21.17896 -20.64002 -18.95229 -18.42147 -17.52645 -16.27328 -15.84274 -15.70466 -15.41177 -14.63829 -14.24701 -13.86065 -13.60735 -13.31455 -13.06273 -12.87177 -12.62458 -12.55186 -12.38301 -12.08593 -11.94547 -11.47691 -11.21965 -10.84275 -10.61937 -10.53316 -10.49020 -10.18458 -9.87528 -9.78196 -9.67804 -9.00798 -8.77917 -8.55483 -8.28982 -8.11187 -6.60480 -5.63760 -3.04700 0.66046 1.56816 1.97175 2.54999 3.18093 3.49584 3.55779 3.59329 3.71659 4.62481 4.69546 4.74823 4.97307 5.20648 5.35065 5.41156 5.47540 5.54070 5.54666 5.60746 5.71000 5.87408 5.95884 6.08462 6.13386 6.27895 6.35100 6.39356 6.40137 6.54447 6.61678 6.79928 7.00618 7.49236 7.78568 7.95463 8.25197 8.59346 8.71894 9.37733 10.01353 10.49776 11.44598 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.006696 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.881523 B = 4180.764670 C = 5239.248646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.010 3.990 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.144 3.856 11 C -0.118 4.118 12 C -0.106 4.106 13 H 0.088 0.912 14 C 0.088 3.912 15 N -0.631 5.631 16 C 0.604 3.396 17 O -0.506 6.506 18 C -0.236 4.236 19 C -0.072 4.072 20 C -0.145 4.145 21 C -0.253 4.253 22 S 0.195 5.805 23 C 0.130 3.870 24 H 0.076 0.924 25 C 0.163 3.837 26 H 0.253 0.747 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.108 0.892 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -13.251 -11.727 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.017 3.983 11 C -0.157 4.157 12 C -0.125 4.125 13 H 0.106 0.894 14 C -0.036 4.036 15 N -0.367 5.367 16 C 0.392 3.608 17 O -0.383 6.383 18 C -0.357 4.357 19 C -0.105 4.105 20 C -0.176 4.176 21 C -0.390 4.390 22 S 0.461 5.539 23 C 0.028 3.972 24 H 0.094 0.906 25 C 0.037 3.963 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.126 0.874 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.607 -13.758 -11.194 18.100 hybrid contribution 0.778 2.249 -0.954 2.564 sum 4.385 -11.509 -12.148 17.299 Atomic orbital electron populations 1.69982 1.05202 1.25462 1.54285 1.24912 0.95286 0.98146 1.00490 0.86370 0.78932 0.83634 0.77804 1.21044 1.21665 1.21176 1.19045 0.91831 0.84504 1.42789 0.91826 1.43418 1.28352 1.01559 1.57120 1.20776 0.97505 0.87512 0.92467 1.21871 0.95000 0.99413 0.99422 1.22830 0.98615 0.97650 0.93404 0.89372 1.23658 1.01026 0.81545 0.97345 1.50210 1.50839 1.05496 1.30201 1.16446 0.80015 0.84306 0.80055 1.90908 1.57814 1.20012 1.69520 1.24902 1.09560 0.97126 1.04110 1.20815 0.95624 1.00989 0.93045 1.20001 1.02159 0.94398 1.01062 1.25396 1.08419 0.99724 1.05498 1.83027 1.42197 1.08053 1.20589 1.23096 0.92845 0.96582 0.84689 0.90590 1.20052 0.88680 0.96758 0.90853 0.93698 0.96172 0.92529 0.92074 0.92626 0.90538 0.90029 0.83000 0.84176 0.81941 0.87431 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 10.92 55.49 0.61 -27.04 16 2 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 3 Si 0.90 23.59 29.58 -169.99 -5.03 18.56 16 4 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -7.28 9.56 -15.06 -0.14 -7.42 16 8 H 0.06 1.81 7.84 -52.49 -0.41 1.40 16 9 N -0.58 -14.95 3.00 -175.35 -0.53 -15.48 16 10 C 0.14 2.97 6.44 -3.92 -0.03 2.95 16 11 C -0.12 -1.95 5.66 -26.67 -0.15 -2.11 16 12 C -0.11 -1.61 4.34 -89.97 -0.39 -2.00 16 13 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.09 1.20 6.74 -2.57 -0.02 1.18 16 15 N -0.63 -11.79 3.40 -173.07 -0.59 -12.38 16 16 C 0.60 12.73 7.97 -12.89 -0.10 12.62 16 17 O -0.51 -13.15 16.12 5.19 0.08 -13.07 16 18 C -0.24 -4.01 6.44 -36.79 -0.24 -4.25 16 19 C -0.07 -1.12 10.01 -40.43 -0.40 -1.53 16 20 C -0.14 -1.77 10.15 -41.42 -0.42 -2.19 16 21 C -0.25 -2.79 10.92 29.18 0.32 -2.47 16 22 S 0.19 2.38 19.79 -107.50 -2.13 0.26 16 23 C 0.13 2.51 4.30 -68.08 -0.29 2.22 16 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 25 C 0.16 4.07 4.68 -5.80 -0.03 4.04 16 26 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 1.16 7.88 -51.93 -0.41 0.75 16 29 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.95 6.20 -51.93 -0.32 0.63 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.15 2.41 8.06 -52.48 -0.42 1.99 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.11 3.17 4.89 -51.93 -0.25 2.92 16 37 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -34.49 312.04 -9.59 -44.08 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.73 Total: -0.89 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.98 Total: 1.26 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.51 Total: -54.90 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.03 Total: 18.56 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.13 Total: 0.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.49 -9.59 -44.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084165124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.974 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds