Wall clock time and date at job start Tue Mar 31 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47230 * 239.99968 * 3 2 1 5 5 H 1.48499 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47504 * 119.99996 * 3 2 1 7 7 C 1.38811 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00246 * 194.85536 * 7 2 1 9 9 N 1.36938 * 119.99565 * 14.85979 * 7 2 1 10 10 C 1.46620 * 119.88923 * 204.86898 * 9 7 2 11 11 C 1.53106 * 108.00834 * 237.32569 * 10 9 7 12 12 C 1.53005 * 109.45019 * 301.02843 * 11 10 9 13 13 H 1.09000 * 113.42317 * 274.22908 * 12 11 10 14 14 C 1.54649 * 110.83744 * 143.88500 * 12 11 10 15 15 N 1.47797 * 85.79272 * 270.22846 * 14 12 11 16 16 C 1.34780 * 135.01288 * 153.76908 * 15 14 12 17 17 O 1.21700 * 120.00450 * 179.97438 * 16 15 14 18 18 C 1.46584 * 119.99675 * 0.02562 * 16 15 14 19 19 C 1.36655 * 125.45730 * 179.97438 * 18 16 15 20 20 C 1.37468 * 113.29886 * 179.97438 * 19 18 16 21 21 C 1.33812 * 115.09914 * 0.02562 * 20 19 18 22 22 S 1.70616 * 110.95550 * 359.75907 * 21 20 19 23 23 C 1.48752 * 89.96494 * 333.87867 * 15 14 12 24 24 H 1.09004 * 111.44896 * 274.71994 * 23 15 14 25 25 C 1.45324 * 120.52311 * 23.37689 * 9 7 2 26 26 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.75375 * 117.70046 * 10 9 7 28 28 H 1.08999 * 109.75304 * 356.95535 * 10 9 7 29 29 H 1.09004 * 109.47337 * 61.02343 * 11 10 9 30 30 H 1.08998 * 109.47543 * 181.02657 * 11 10 9 31 31 H 1.09001 * 113.82068 * 24.45289 * 14 12 11 32 32 H 1.09003 * 113.81799 * 156.01048 * 14 12 11 33 33 H 1.08006 * 123.34908 * 359.93810 * 19 18 16 34 34 H 1.07999 * 122.45346 * 179.97438 * 20 19 18 35 35 H 1.08004 * 124.52469 * 180.02562 * 21 20 19 36 36 H 1.09002 * 107.69867 * 20.00433 * 25 9 7 37 37 H 1.08992 * 109.96203 * 261.86269 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0632 -1.2177 0.2403 9 7 1.3599 -2.3683 -0.3031 10 6 1.8762 -3.6451 0.1998 11 6 2.1390 -4.5559 -1.0025 12 6 0.8384 -4.7578 -1.7827 13 1 0.2233 -5.5707 -1.3966 14 6 1.1142 -4.8305 -3.3026 15 7 0.9338 -3.3636 -3.2951 16 6 1.3745 -2.3450 -4.0600 17 8 1.0464 -1.2023 -3.7997 18 6 2.2480 -2.6137 -5.2060 19 6 2.7573 -1.6700 -6.0530 20 6 3.5491 -2.1996 -7.0442 21 6 3.6844 -3.5305 -7.0123 22 16 2.8136 -4.2012 -5.7074 23 6 0.0667 -3.4773 -2.0919 24 1 -0.9676 -3.6874 -2.3644 25 6 0.1412 -2.3493 -1.0945 26 1 -0.4850 0.8401 -0.0004 27 1 1.1399 -4.1068 0.8577 28 1 2.8050 -3.4778 0.7452 29 1 2.8842 -4.0954 -1.6512 30 1 2.5074 -5.5207 -0.6539 31 1 2.1267 -5.1483 -3.5516 32 1 0.3481 -5.3654 -3.8640 33 1 2.5572 -0.6133 -5.9539 34 1 4.0263 -1.5865 -7.7944 35 1 4.2704 -4.1032 -7.7159 36 1 0.1113 -1.4027 -1.6341 37 1 -0.7285 -2.4033 -0.4397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084165124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:35 Heat of formation + Delta-G solvation = 46.107833 kcal Electronic energy + Delta-G solvation = -21902.873852 eV Core-core repulsion = 18773.211142 eV Total energy + Delta-G solvation = -3129.662709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71301 -39.57839 -38.11242 -37.02973 -33.99964 -31.98253 -31.62113 -29.84024 -28.62597 -25.93357 -25.68802 -24.38330 -22.74529 -22.01946 -20.10518 -19.80755 -19.23076 -17.92853 -17.34169 -17.14161 -16.76417 -16.28026 -15.82813 -15.58050 -15.20992 -14.88231 -14.54402 -14.34036 -14.01968 -13.77825 -13.68734 -13.57643 -13.19545 -13.15086 -12.83910 -12.67416 -12.46645 -12.26705 -12.02891 -11.91880 -11.68346 -11.46527 -11.25882 -10.74533 -10.41340 -9.95454 -9.51295 -9.49160 -8.70751 -7.86833 -5.28854 -0.45015 0.52216 0.98022 1.33239 1.41651 1.44451 1.46924 1.82047 2.28716 2.47235 3.28944 3.43575 3.50957 3.72707 3.96020 4.10767 4.18360 4.35347 4.38907 4.46875 4.50636 4.57503 4.66686 4.70939 4.78272 4.91066 5.03451 5.06717 5.11743 5.25963 5.30863 5.35844 5.42297 5.55326 5.70061 5.81715 6.38971 6.82892 7.17995 7.21778 7.95371 8.34223 9.17658 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.006696 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.881523 B = 4180.764670 C = 5239.248646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.955 3.045 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.256 4.256 8 H 0.062 0.938 9 N -0.600 5.600 10 C 0.135 3.865 11 C -0.107 4.107 12 C -0.093 4.093 13 H 0.134 0.866 14 C 0.100 3.900 15 N -0.637 5.637 16 C 0.591 3.409 17 O -0.584 6.584 18 C -0.293 4.293 19 C -0.080 4.080 20 C -0.158 4.158 21 C -0.229 4.229 22 S 0.264 5.736 23 C 0.114 3.886 24 H 0.096 0.904 25 C 0.176 3.824 26 H 0.244 0.756 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.167 0.833 35 H 0.206 0.794 36 H 0.054 0.946 37 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -17.631 -13.538 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.784 3.216 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.387 4.387 8 H 0.080 0.920 9 N -0.323 5.323 10 C 0.010 3.990 11 C -0.146 4.146 12 C -0.112 4.112 13 H 0.152 0.848 14 C -0.021 4.021 15 N -0.372 5.372 16 C 0.381 3.619 17 O -0.467 6.467 18 C -0.413 4.413 19 C -0.114 4.114 20 C -0.188 4.188 21 C -0.367 4.367 22 S 0.531 5.469 23 C 0.011 3.989 24 H 0.113 0.887 25 C 0.049 3.951 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.184 0.816 35 H 0.223 0.777 36 H 0.072 0.928 37 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 5.544 -18.240 -12.989 23.068 hybrid contribution 0.241 3.504 -0.416 3.537 sum 5.785 -14.736 -13.405 20.744 Atomic orbital electron populations 1.70153 1.06392 1.25223 1.56175 1.25613 0.96051 1.01058 1.01519 0.85517 0.77827 0.80372 0.77852 1.22217 1.21924 1.18973 1.19358 0.91977 0.86140 1.41187 0.91983 1.43654 1.28280 1.02531 1.57884 1.21033 0.97223 0.86096 0.94626 1.21764 0.95436 1.00294 0.97126 1.22845 0.97550 0.95993 0.94779 0.84828 1.23953 1.03558 0.78195 0.96391 1.50399 1.49938 1.07678 1.29180 1.17144 0.80028 0.83790 0.80917 1.90851 1.60840 1.23047 1.71916 1.24683 1.11495 1.01018 1.04122 1.20968 0.96173 1.00198 0.94067 1.20124 1.02257 0.95492 1.00970 1.25958 1.06532 0.99368 1.04812 1.82531 1.40695 1.03826 1.19868 1.23067 0.95079 0.96554 0.84231 0.88654 1.19655 0.87467 0.97002 0.90974 0.94663 0.95069 0.92967 0.94253 0.87743 0.88653 0.85950 0.85426 0.81588 0.77689 0.92809 0.98075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.89 10.92 21.65 0.24 -60.66 16 2 C -0.05 -2.95 4.96 84.86 0.42 -2.52 16 3 Si 0.96 51.02 29.58 68.60 2.03 53.04 16 4 H -0.29 -16.10 7.11 99.48 0.71 -15.39 16 5 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.26 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.26 -15.44 9.56 84.03 0.80 -14.63 16 8 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 9 N -0.60 -31.88 3.00 -708.70 -2.13 -34.01 16 10 C 0.14 5.46 6.44 86.39 0.56 6.01 16 11 C -0.11 -3.21 5.66 30.63 0.17 -3.03 16 12 C -0.09 -2.46 4.34 -10.32 -0.04 -2.50 16 13 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 14 C 0.10 2.29 6.74 86.62 0.58 2.88 16 15 N -0.64 -23.52 3.40 -819.68 -2.79 -26.31 16 16 C 0.59 25.99 7.97 86.42 0.69 26.68 16 17 O -0.58 -33.21 16.12 -4.35 -0.07 -33.28 16 18 C -0.29 -9.94 6.44 24.08 0.16 -9.79 16 19 C -0.08 -2.53 10.01 21.72 0.22 -2.31 16 20 C -0.16 -3.49 10.15 21.08 0.21 -3.27 16 21 C -0.23 -3.97 10.92 66.81 0.73 -3.24 16 22 S 0.26 5.40 19.79 -56.49 -1.12 4.29 16 23 C 0.11 4.35 4.30 43.65 0.19 4.54 16 24 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 25 C 0.18 9.25 4.68 85.87 0.40 9.65 16 26 H 0.24 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 2.10 7.88 -2.39 -0.02 2.08 16 29 H 0.04 1.36 7.69 -2.39 -0.02 1.34 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.10 1.86 6.20 -2.39 -0.01 1.84 16 32 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.05 3.43 4.89 -2.39 -0.01 3.42 16 37 H 0.00 0.09 8.03 -2.39 -0.02 0.07 16 Total: -1.00 -86.28 312.04 2.33 -83.95 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.08 Total: 4.52 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.09 Total: 8.46 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -4.68 Total: -120.97 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.07 Total: -33.28 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.03 Total: 53.04 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.12 Total: 4.29 kcal Total: -86.28 2.33 -83.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084165124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.058 kcal (2) G-P(sol) polarization free energy of solvation -86.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds