Wall clock time and date at job start Tue Mar 31 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99832 * 2 1 4 4 H 1.48504 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47577 * 300.00413 * 3 2 1 6 6 H 1.48500 * 109.46986 * 60.00363 * 3 2 1 7 7 C 1.38815 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99937 * 196.01283 * 7 2 1 9 9 N 1.36932 * 120.00006 * 16.01202 * 7 2 1 10 10 C 1.46533 * 119.74079 * 205.73007 * 9 7 2 11 11 C 1.53146 * 108.25808 * 236.39706 * 10 9 7 12 12 C 1.53057 * 109.21491 * 301.59443 * 11 10 9 13 13 H 1.08998 * 113.84174 * 275.71083 * 12 11 10 14 14 C 1.54353 * 111.57977 * 142.37347 * 12 11 10 15 15 N 1.47289 * 87.50337 * 274.17145 * 14 12 11 16 16 C 1.34774 * 136.54070 * 151.47445 * 15 14 12 17 17 O 1.21640 * 120.00062 * 185.08553 * 16 15 14 18 18 C 1.47196 * 120.00321 * 4.80924 * 16 15 14 19 19 C 1.44425 * 123.45740 * 6.26732 * 18 16 15 20 20 C 1.32766 * 113.08182 * 179.97438 * 19 18 16 21 21 S 1.75507 * 110.57549 * 359.97438 * 20 19 18 22 22 C 1.36004 * 123.45995 * 185.96210 * 18 16 15 23 23 C 1.46463 * 86.91150 * 331.21360 * 15 14 12 24 24 H 1.09004 * 111.44069 * 277.32205 * 23 15 14 25 25 C 1.45703 * 119.74239 * 25.70917 * 9 7 2 26 26 H 0.96996 * 120.00201 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.71027 * 356.09275 * 10 9 7 28 28 H 1.09007 * 109.71047 * 116.66537 * 10 9 7 29 29 H 1.09000 * 109.50851 * 61.51572 * 11 10 9 30 30 H 1.08998 * 109.51501 * 181.61585 * 11 10 9 31 31 H 1.08997 * 113.52611 * 159.53068 * 14 12 11 32 32 H 1.09005 * 113.61939 * 28.81973 * 14 12 11 33 33 H 1.07999 * 123.45832 * 359.94649 * 19 18 16 34 34 H 1.07995 * 124.71697 * 179.97438 * 20 19 18 35 35 H 1.08006 * 124.59147 * 0.03200 * 22 18 16 36 36 H 1.09010 * 108.78690 * 19.13252 * 25 9 7 37 37 H 1.08995 * 108.79320 * 260.92152 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0588 -1.2204 0.2575 9 7 1.3655 -2.3649 -0.3282 10 6 1.8646 -3.6428 0.1866 11 6 2.1422 -4.5644 -1.0046 12 6 0.8537 -4.7485 -1.8100 13 1 0.2003 -5.5305 -1.4232 14 6 1.1346 -4.7975 -3.3269 15 7 1.0673 -3.3262 -3.3216 16 6 1.6043 -2.3197 -4.0393 17 8 1.4083 -1.1654 -3.7094 18 6 2.4330 -2.6173 -5.2189 19 6 2.6123 -3.9480 -5.7508 20 6 3.4005 -3.9799 -6.8187 21 16 3.9600 -2.3657 -7.2207 22 6 3.1036 -1.6667 -5.9233 23 6 0.1480 -3.4513 -2.1883 24 1 -0.8711 -3.6474 -2.5217 25 6 0.1882 -2.3217 -1.1855 26 1 -0.4850 0.8400 0.0004 27 1 2.7851 -3.4791 0.7470 28 1 1.1150 -4.0957 0.8356 29 1 2.9078 -4.1183 -1.6393 30 1 2.4880 -5.5328 -0.6429 31 1 0.3370 -5.2676 -3.9021 32 1 2.1217 -5.1871 -3.5760 33 1 2.1528 -4.8270 -5.3234 34 1 3.6611 -4.8747 -7.3642 35 1 3.0961 -0.6120 -5.6910 36 1 0.1806 -1.3739 -1.7240 37 1 -0.7033 -2.3750 -0.5608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084175781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:25 Heat of formation + Delta-G solvation = 75.827631 kcal Electronic energy + Delta-G solvation = -21954.654465 eV Core-core repulsion = 18826.280503 eV Total energy + Delta-G solvation = -3128.373962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57203 -38.19710 -36.34558 -35.16773 -32.09489 -30.10565 -29.77238 -29.08313 -26.91787 -24.74905 -23.86667 -22.46851 -21.51987 -20.50197 -19.16739 -18.20156 -17.52403 -16.39584 -15.91077 -15.72454 -15.32062 -14.34394 -14.14213 -13.79126 -13.62498 -13.34850 -13.10125 -12.78293 -12.66504 -12.59347 -12.44133 -12.15958 -11.87307 -11.42877 -11.09086 -10.97433 -10.62620 -10.57351 -10.42866 -10.12531 -9.83712 -9.73359 -9.55298 -9.03902 -8.94522 -8.44481 -8.25801 -8.04798 -6.53526 -5.61116 -3.02172 0.89637 1.53888 1.88764 2.13318 3.38782 3.50996 3.59198 3.59897 3.84299 4.63798 4.68711 4.71661 4.96629 5.16931 5.21940 5.44136 5.47944 5.53192 5.57242 5.65213 5.74252 5.77913 5.92536 6.01726 6.16426 6.22566 6.27232 6.40595 6.43311 6.55154 6.63979 6.82650 7.04353 7.53236 7.81204 7.98825 8.36298 8.62591 8.81460 9.40657 10.05331 10.52894 11.47443 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.006398 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.183331 B = 4375.333311 C = 5570.159082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.012 3.988 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.250 4.250 8 H 0.061 0.939 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.113 4.113 13 H 0.092 0.908 14 C 0.091 3.909 15 N -0.625 5.625 16 C 0.599 3.401 17 O -0.510 6.510 18 C -0.147 4.147 19 C -0.112 4.112 20 C -0.238 4.238 21 S 0.163 5.837 22 C -0.182 4.182 23 C 0.120 3.880 24 H 0.073 0.927 25 C 0.167 3.833 26 H 0.251 0.749 27 H 0.055 0.945 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.101 0.899 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 -12.926 -13.010 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.079 0.921 9 N -0.305 5.305 10 C 0.022 3.978 11 C -0.155 4.155 12 C -0.133 4.133 13 H 0.110 0.890 14 C -0.032 4.032 15 N -0.361 5.361 16 C 0.387 3.613 17 O -0.386 6.386 18 C -0.164 4.164 19 C -0.142 4.142 20 C -0.373 4.373 21 S 0.428 5.572 22 C -0.320 4.320 23 C 0.016 3.984 24 H 0.091 0.909 25 C 0.041 3.959 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.193 0.807 36 H 0.119 0.881 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.282 -11.369 -14.087 18.857 hybrid contribution -0.591 0.230 0.912 1.111 sum 4.692 -11.138 -13.174 17.878 Atomic orbital electron populations 1.70025 1.05238 1.25121 1.54463 1.24897 0.95196 0.98108 1.00462 0.86265 0.79280 0.84438 0.76978 1.20532 1.21542 1.22011 1.19097 0.92067 0.84842 1.41898 0.92091 1.43433 1.32271 1.01463 1.53373 1.20723 0.97395 0.87237 0.92490 1.21835 0.95174 0.99310 0.99181 1.22816 0.98885 0.97831 0.93739 0.88982 1.23478 1.01084 0.81751 0.96914 1.49218 1.47593 1.05653 1.33653 1.16921 0.79621 0.83862 0.80945 1.90897 1.60182 1.19068 1.68447 1.20471 1.03772 0.92646 0.99468 1.21588 0.99439 0.97089 0.96048 1.25437 1.06794 1.01221 1.03841 1.82922 1.47553 0.98543 1.28198 1.25564 1.01594 1.04907 0.99957 1.22669 0.92060 0.96908 0.86781 0.90945 1.20171 0.89355 0.96336 0.90036 0.93926 0.92639 0.96286 0.92104 0.92703 0.90465 0.90761 0.83073 0.81674 0.80740 0.88117 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 11.07 55.49 0.61 -27.30 16 2 C 0.01 0.35 4.90 -17.43 -0.09 0.27 16 3 Si 0.90 23.87 29.58 -169.99 -5.03 18.84 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 7 C -0.25 -7.30 9.51 -15.06 -0.14 -7.44 16 8 H 0.06 1.77 7.85 -52.49 -0.41 1.36 16 9 N -0.58 -15.18 3.02 -174.89 -0.53 -15.71 16 10 C 0.15 3.12 6.46 -3.95 -0.03 3.09 16 11 C -0.12 -1.95 5.71 -26.63 -0.15 -2.10 16 12 C -0.11 -1.73 4.57 -90.17 -0.41 -2.14 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.09 1.21 5.87 -11.40 -0.07 1.14 16 15 N -0.63 -11.62 3.32 -188.91 -0.63 -12.25 16 16 C 0.60 12.52 7.99 -12.62 -0.10 12.42 16 17 O -0.51 -13.28 15.91 5.24 0.08 -13.20 16 18 C -0.15 -2.43 5.98 -104.63 -0.63 -3.06 16 19 C -0.11 -1.42 9.49 -39.02 -0.37 -1.79 16 20 C -0.24 -2.49 11.12 28.86 0.32 -2.17 16 21 S 0.16 1.78 23.02 -107.50 -2.48 -0.70 16 22 C -0.18 -2.74 10.53 29.93 0.32 -2.43 16 23 C 0.12 2.31 4.03 -77.69 -0.31 2.00 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 25 C 0.17 4.22 4.56 -5.43 -0.02 4.20 16 26 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.06 1.16 7.87 -51.93 -0.41 0.75 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.87 6.61 -51.93 -0.34 0.53 16 33 H 0.15 1.63 5.06 -52.49 -0.27 1.37 16 34 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.18 2.72 8.03 -52.48 -0.42 2.30 16 36 H 0.10 3.00 5.02 -51.92 -0.26 2.74 16 37 H 0.03 0.80 7.99 -51.93 -0.41 0.39 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -35.17 311.15 -9.55 -44.73 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.60 Total: -1.10 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.68 Total: 2.00 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.54 Total: -55.25 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.03 Total: 18.84 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.48 Total: -0.70 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.17 -9.55 -44.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084175781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.554 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds