Wall clock time and date at job start Tue Mar 31 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99832 * 2 1 4 4 H 1.48504 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47577 * 300.00413 * 3 2 1 6 6 H 1.48500 * 109.46986 * 60.00363 * 3 2 1 7 7 C 1.38815 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99937 * 196.01283 * 7 2 1 9 9 N 1.36932 * 120.00006 * 16.01202 * 7 2 1 10 10 C 1.46533 * 119.74079 * 205.73007 * 9 7 2 11 11 C 1.53146 * 108.25808 * 236.39706 * 10 9 7 12 12 C 1.53057 * 109.21491 * 301.59443 * 11 10 9 13 13 H 1.08998 * 113.84174 * 275.71083 * 12 11 10 14 14 C 1.54353 * 111.57977 * 142.37347 * 12 11 10 15 15 N 1.47289 * 87.50337 * 274.17145 * 14 12 11 16 16 C 1.34774 * 136.54070 * 151.47445 * 15 14 12 17 17 O 1.21640 * 120.00062 * 185.08553 * 16 15 14 18 18 C 1.47196 * 120.00321 * 4.80924 * 16 15 14 19 19 C 1.44425 * 123.45740 * 6.26732 * 18 16 15 20 20 C 1.32766 * 113.08182 * 179.97438 * 19 18 16 21 21 S 1.75507 * 110.57549 * 359.97438 * 20 19 18 22 22 C 1.36004 * 123.45995 * 185.96210 * 18 16 15 23 23 C 1.46463 * 86.91150 * 331.21360 * 15 14 12 24 24 H 1.09004 * 111.44069 * 277.32205 * 23 15 14 25 25 C 1.45703 * 119.74239 * 25.70917 * 9 7 2 26 26 H 0.96996 * 120.00201 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.71027 * 356.09275 * 10 9 7 28 28 H 1.09007 * 109.71047 * 116.66537 * 10 9 7 29 29 H 1.09000 * 109.50851 * 61.51572 * 11 10 9 30 30 H 1.08998 * 109.51501 * 181.61585 * 11 10 9 31 31 H 1.08997 * 113.52611 * 159.53068 * 14 12 11 32 32 H 1.09005 * 113.61939 * 28.81973 * 14 12 11 33 33 H 1.07999 * 123.45832 * 359.94649 * 19 18 16 34 34 H 1.07995 * 124.71697 * 179.97438 * 20 19 18 35 35 H 1.08006 * 124.59147 * 0.03200 * 22 18 16 36 36 H 1.09010 * 108.78690 * 19.13252 * 25 9 7 37 37 H 1.08995 * 108.79320 * 260.92152 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0588 -1.2204 0.2575 9 7 1.3655 -2.3649 -0.3282 10 6 1.8646 -3.6428 0.1866 11 6 2.1422 -4.5644 -1.0046 12 6 0.8537 -4.7485 -1.8100 13 1 0.2003 -5.5305 -1.4232 14 6 1.1346 -4.7975 -3.3269 15 7 1.0673 -3.3262 -3.3216 16 6 1.6043 -2.3197 -4.0393 17 8 1.4083 -1.1654 -3.7094 18 6 2.4330 -2.6173 -5.2189 19 6 2.6123 -3.9480 -5.7508 20 6 3.4005 -3.9799 -6.8187 21 16 3.9600 -2.3657 -7.2207 22 6 3.1036 -1.6667 -5.9233 23 6 0.1480 -3.4513 -2.1883 24 1 -0.8711 -3.6474 -2.5217 25 6 0.1882 -2.3217 -1.1855 26 1 -0.4850 0.8400 0.0004 27 1 2.7851 -3.4791 0.7470 28 1 1.1150 -4.0957 0.8356 29 1 2.9078 -4.1183 -1.6393 30 1 2.4880 -5.5328 -0.6429 31 1 0.3370 -5.2676 -3.9021 32 1 2.1217 -5.1871 -3.5760 33 1 2.1528 -4.8270 -5.3234 34 1 3.6611 -4.8747 -7.3642 35 1 3.0961 -0.6120 -5.6910 36 1 0.1806 -1.3739 -1.7240 37 1 -0.7033 -2.3750 -0.5608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084175781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:24 Heat of formation + Delta-G solvation = 51.008475 kcal Electronic energy + Delta-G solvation = -21955.730705 eV Core-core repulsion = 18826.280503 eV Total energy + Delta-G solvation = -3129.450202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97976 -39.57744 -37.61408 -37.05629 -33.99308 -31.93528 -31.01295 -30.46044 -28.63792 -26.02463 -25.73352 -23.94000 -22.95558 -21.87228 -20.43708 -19.56934 -19.08168 -17.95060 -17.35918 -17.20504 -16.88132 -16.21668 -15.66563 -15.40588 -15.20188 -14.85328 -14.37051 -14.30600 -14.13928 -13.80149 -13.68907 -13.53844 -13.36528 -13.16371 -12.77710 -12.70892 -12.36417 -12.21026 -11.99687 -11.93471 -11.69828 -11.49086 -11.09164 -10.70879 -10.39937 -10.01906 -9.59417 -9.28934 -8.67632 -7.87383 -5.29979 -0.18377 0.59521 0.95592 1.08339 1.31023 1.38304 1.43856 2.05142 2.44151 2.46127 3.27663 3.42304 3.63557 3.72794 3.87343 3.98720 4.17063 4.33144 4.45097 4.46992 4.53628 4.61348 4.68983 4.73937 4.78128 4.92898 4.97528 5.06451 5.10645 5.18898 5.29193 5.33102 5.44619 5.55026 5.71451 5.80362 6.38487 6.95801 7.18068 7.31977 7.95785 8.33855 9.17220 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.006398 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.183331 B = 4375.333311 C = 5570.159082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.305 1.305 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.056 0.944 9 N -0.601 5.601 10 C 0.138 3.862 11 C -0.104 4.104 12 C -0.101 4.101 13 H 0.136 0.864 14 C 0.105 3.895 15 N -0.632 5.632 16 C 0.584 3.416 17 O -0.589 6.589 18 C -0.172 4.172 19 C -0.123 4.123 20 C -0.219 4.219 21 S 0.234 5.766 22 C -0.217 4.217 23 C 0.103 3.897 24 H 0.094 0.906 25 C 0.180 3.820 26 H 0.244 0.756 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.210 0.790 35 H 0.150 0.850 36 H 0.046 0.954 37 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 -17.397 -15.126 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.233 1.233 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.074 0.926 9 N -0.324 5.324 10 C 0.013 3.987 11 C -0.143 4.143 12 C -0.119 4.119 13 H 0.153 0.847 14 C -0.015 4.015 15 N -0.366 5.366 16 C 0.374 3.626 17 O -0.471 6.471 18 C -0.190 4.190 19 C -0.151 4.151 20 C -0.354 4.354 21 S 0.499 5.501 22 C -0.356 4.356 23 C -0.001 4.001 24 H 0.112 0.888 25 C 0.053 3.947 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.192 0.808 34 H 0.227 0.773 35 H 0.168 0.832 36 H 0.064 0.936 37 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 6.871 -15.940 -16.201 23.744 hybrid contribution -1.023 1.589 1.545 2.441 sum 5.849 -14.351 -14.656 21.330 Atomic orbital electron populations 1.70176 1.06400 1.25031 1.56295 1.25578 0.95971 1.00954 1.01454 0.85419 0.78775 0.81167 0.76444 1.19345 1.23252 1.20741 1.19364 0.92035 0.86540 1.40417 0.92588 1.43673 1.32180 1.02401 1.54129 1.20986 0.97056 0.85965 0.94669 1.21712 0.95651 1.00037 0.96928 1.22867 0.97853 0.95781 0.95437 0.84675 1.23742 1.04156 0.78080 0.95571 1.49399 1.46481 1.08131 1.32555 1.17744 0.79638 0.83312 0.81943 1.90846 1.63202 1.22237 1.70800 1.20428 1.04517 0.95304 0.98740 1.21608 1.00896 0.95562 0.97028 1.25978 1.04501 1.02295 1.02611 1.82667 1.44769 0.98130 1.24511 1.25703 1.03191 1.04314 1.02408 1.22727 0.94340 0.96765 0.86280 0.88848 1.19786 0.87883 0.96725 0.90278 0.94706 0.93268 0.95279 0.94354 0.87916 0.86167 0.88179 0.80815 0.77327 0.83221 0.93557 0.98635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.49 11.07 21.65 0.24 -61.25 16 2 C -0.04 -2.80 4.90 84.86 0.42 -2.39 16 3 Si 0.95 51.79 29.58 68.60 2.03 53.81 16 4 H -0.27 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.30 -17.22 7.11 99.48 0.71 -16.51 16 6 H -0.28 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.25 -15.52 9.51 84.04 0.80 -14.72 16 8 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 9 N -0.60 -32.45 3.02 -707.24 -2.14 -34.58 16 10 C 0.14 5.73 6.46 86.42 0.56 6.29 16 11 C -0.10 -3.18 5.71 30.66 0.17 -3.01 16 12 C -0.10 -2.65 4.57 -10.50 -0.05 -2.70 16 13 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 14 C 0.11 2.29 5.87 81.18 0.48 2.76 16 15 N -0.63 -23.03 3.32 -869.81 -2.88 -25.91 16 16 C 0.58 25.40 7.99 86.60 0.69 26.10 16 17 O -0.59 -33.48 15.91 -4.16 -0.07 -33.54 16 18 C -0.17 -5.67 5.98 -19.87 -0.12 -5.79 16 19 C -0.12 -2.66 9.49 22.67 0.22 -2.44 16 20 C -0.22 -3.48 11.12 66.64 0.74 -2.74 16 21 S 0.23 4.43 23.02 -56.49 -1.30 3.12 16 22 C -0.22 -6.69 10.53 67.30 0.71 -5.98 16 23 C 0.10 3.94 4.03 38.69 0.16 4.10 16 24 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 25 C 0.18 9.57 4.56 85.91 0.39 9.97 16 26 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.05 2.05 7.87 -2.39 -0.02 2.03 16 28 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.04 1.35 7.69 -2.39 -0.02 1.33 16 30 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.75 6.61 -2.38 -0.02 1.73 16 33 H 0.17 2.79 5.06 -2.91 -0.01 2.78 16 34 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.15 5.18 8.03 -2.91 -0.02 5.16 16 36 H 0.05 2.98 5.02 -2.38 -0.01 2.97 16 37 H 0.00 -0.24 7.99 -2.39 -0.02 -0.26 16 Total: -1.00 -88.40 311.15 2.13 -86.27 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 1.08 Total: 2.64 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.16 Total: 9.44 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -4.78 Total: -121.75 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.07 Total: -33.54 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.03 Total: 53.81 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.30 Total: 3.12 kcal Total: -88.40 2.13 -86.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084175781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.281 kcal (2) G-P(sol) polarization free energy of solvation -88.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds