Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99531 * 2 1 4 4 H 1.48502 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47257 * 300.00123 * 3 2 1 6 6 H 1.48504 * 109.47182 * 60.00338 * 3 2 1 7 7 C 1.38809 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00065 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.50242 * 130.83918 * 0.03144 * 9 7 2 11 11 H 1.09000 * 115.85880 * 0.33662 * 10 9 7 12 12 C 1.55848 * 101.05043 * 234.65914 * 10 9 7 13 13 C 1.57719 * 103.12257 * 325.96155 * 12 10 9 14 14 C 1.50243 * 130.83907 * 179.97438 * 9 7 2 15 15 H 1.09002 * 115.85427 * 359.66929 * 14 9 7 16 16 C 1.55840 * 101.05254 * 233.99335 * 14 9 7 17 17 H 1.09000 * 110.63102 * 85.71121 * 16 14 9 18 18 N 1.46501 * 110.62498 * 208.57434 * 16 14 9 19 19 C 1.34777 * 119.99665 * 274.05045 * 18 16 14 20 20 O 1.21704 * 120.00175 * 0.02562 * 19 18 16 21 21 C 1.46586 * 119.99658 * 179.97438 * 19 18 16 22 22 C 1.36651 * 125.45488 * 180.02562 * 21 19 18 23 23 C 1.37481 * 113.29436 * 179.72417 * 22 21 19 24 24 C 1.33820 * 115.09758 * 0.45720 * 23 22 21 25 25 S 1.70613 * 110.95610 * 359.55897 * 24 23 22 26 26 C 1.54857 * 103.44491 * 327.06173 * 16 14 9 27 27 H 0.96996 * 120.00702 * 359.97438 * 1 2 3 28 28 H 1.08996 * 110.62482 * 85.54913 * 12 10 9 29 29 H 1.08999 * 110.62416 * 208.42063 * 12 10 9 30 30 H 1.09002 * 111.90513 * 242.54048 * 13 12 10 31 31 H 1.08991 * 110.06469 * 119.01661 * 13 12 10 32 32 H 0.96997 * 120.00108 * 94.05253 * 18 16 14 33 33 H 1.07992 * 123.35495 * 359.97438 * 22 21 19 34 34 H 1.07997 * 122.45197 * 180.28164 * 23 22 21 35 35 H 1.07996 * 124.51801 * 179.83154 * 24 23 22 36 36 H 1.08998 * 110.62631 * 118.49198 * 26 16 14 37 37 H 1.09002 * 110.62540 * 241.50909 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0007 11 1 -0.8013 -1.7967 -0.0065 12 6 -0.2770 -3.5957 1.2471 13 6 1.0793 -4.4007 1.2356 14 6 1.8189 -3.8072 -0.0016 15 1 2.9015 -3.9342 -0.0081 16 6 1.0667 -4.3840 -1.2385 17 1 1.6254 -4.1878 -2.1536 18 7 0.8331 -5.8211 -1.0764 19 6 1.7828 -6.7039 -1.4441 20 8 2.8346 -6.3071 -1.9104 21 6 1.5492 -8.1418 -1.2814 22 6 2.4312 -9.1309 -1.6150 23 6 1.9572 -10.3940 -1.3506 24 6 0.7261 -10.4403 -0.8279 25 16 0.0898 -8.8704 -0.6251 26 6 -0.2745 -3.6098 -1.2376 27 1 -0.4851 0.8400 0.0004 28 1 -0.3864 -3.0028 2.1551 29 1 -1.1173 -4.2805 1.1333 30 1 0.9159 -5.4709 1.1081 31 1 1.6393 -4.2028 2.1495 32 1 -0.0051 -6.1373 -0.7045 33 1 3.4053 -8.9393 -2.0400 34 1 2.5348 -11.2838 -1.5527 35 1 0.2067 -11.3500 -0.5650 36 1 -0.3821 -3.0272 -2.1525 37 1 -1.1134 -4.2951 -1.1166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095127884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = 49.048088 kcal Electronic energy + Delta-G solvation = -21226.281639 eV Core-core repulsion = 18096.746429 eV Total energy + Delta-G solvation = -3129.535210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02309 -38.56806 -37.33070 -33.96214 -32.31991 -30.19034 -29.09592 -28.98186 -27.54477 -25.07023 -24.05582 -21.89183 -21.11740 -19.59818 -19.41646 -18.64040 -18.35064 -16.94992 -16.01257 -15.80078 -15.08941 -14.81666 -14.80446 -14.20127 -13.85206 -13.57515 -12.97843 -12.94877 -12.56103 -12.28876 -12.18238 -11.75328 -11.48426 -11.15170 -11.06680 -10.89950 -10.89277 -10.81875 -10.21483 -10.05853 -9.91619 -9.75272 -9.42241 -9.26757 -9.05577 -8.94184 -8.78457 -8.51849 -6.91236 -5.72521 -3.10443 0.39789 1.31804 1.71840 2.29326 3.32398 3.38113 3.40827 3.46430 3.48467 4.45823 4.75149 4.91064 5.14745 5.20913 5.30736 5.38904 5.53195 5.77400 5.80191 5.85166 5.87908 6.01731 6.08696 6.13259 6.15833 6.28855 6.32038 6.53742 6.58747 6.64657 6.79055 6.95623 6.98770 7.26105 7.52755 7.69503 7.80673 8.16653 8.39356 9.10848 9.73306 10.53538 11.37172 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036654 B = 0.003907 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.722698 B = 7164.682359 C = 7542.795599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.080 0.920 9 N -0.589 5.589 10 C 0.153 3.847 11 H 0.155 0.845 12 C -0.134 4.134 13 C -0.134 4.134 14 C 0.129 3.871 15 H 0.085 0.915 16 C 0.128 3.872 17 H 0.085 0.915 18 N -0.706 5.706 19 C 0.582 3.418 20 O -0.530 6.530 21 C -0.254 4.254 22 C -0.065 4.065 23 C -0.148 4.148 24 C -0.238 4.238 25 S 0.198 5.802 26 C -0.140 4.140 27 H 0.253 0.747 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.392 0.608 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.068 0.932 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 -19.536 -0.688 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.098 0.902 9 N -0.310 5.310 10 C 0.046 3.954 11 H 0.172 0.828 12 C -0.174 4.174 13 C -0.173 4.173 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.022 3.978 17 H 0.103 0.897 18 N -0.356 5.356 19 C 0.367 3.633 20 O -0.409 6.409 21 C -0.374 4.374 22 C -0.098 4.098 23 C -0.180 4.180 24 C -0.375 4.375 25 S 0.464 5.536 26 C -0.180 4.180 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.227 0.773 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.086 0.914 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.553 -18.296 -0.461 18.644 hybrid contribution 1.410 -0.258 -0.333 1.471 sum -2.143 -18.554 -0.794 18.695 Atomic orbital electron populations 1.69442 1.04989 1.24865 1.57920 1.24693 0.95652 0.97499 1.02919 0.85953 0.78694 0.83419 0.77188 1.20534 1.21781 1.21819 1.19121 0.90432 0.81817 1.42287 0.90220 1.46478 1.01568 0.98782 1.84134 1.23752 0.87769 0.95306 0.88576 0.82836 1.23510 0.94847 0.97830 1.01206 1.23420 0.97721 0.97333 0.98857 1.23172 0.96279 0.86112 0.92491 0.89658 1.22721 0.98370 0.76160 1.00546 0.89726 1.46160 1.18248 1.07550 1.63662 1.16965 0.84297 0.83568 0.78434 1.90832 1.25548 1.79242 1.45244 1.24865 1.00523 0.98036 1.14008 1.20813 1.00374 0.90563 0.98042 1.20049 0.96049 0.98432 1.03437 1.25293 1.00957 1.03029 1.08263 1.83067 1.16243 0.96298 1.57950 1.23286 0.93808 0.98425 1.02495 0.93621 0.92377 0.93801 0.92920 0.93025 0.77338 0.82927 0.83880 0.81561 0.91375 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 10.47 55.49 0.58 -25.52 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.21 -5.76 10.59 -15.06 -0.16 -5.92 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.59 -14.72 2.99 -145.81 -0.44 -15.16 16 10 C 0.15 3.42 4.67 -62.82 -0.29 3.13 16 11 H 0.15 3.93 5.52 -51.93 -0.29 3.64 16 12 C -0.13 -2.60 6.58 -22.63 -0.15 -2.75 16 13 C -0.13 -2.50 6.48 -22.61 -0.15 -2.65 16 14 C 0.13 2.74 5.30 -62.78 -0.33 2.40 16 15 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 16 C 0.13 2.43 3.08 -65.44 -0.20 2.23 16 17 H 0.08 1.79 7.70 -51.93 -0.40 1.39 16 18 N -0.71 -11.01 3.59 -52.73 -0.19 -11.20 16 19 C 0.58 9.54 7.78 -12.89 -0.10 9.44 16 20 O -0.53 -10.66 16.57 5.19 0.09 -10.57 16 21 C -0.25 -3.30 6.45 -36.79 -0.24 -3.54 16 22 C -0.06 -0.76 10.01 -40.43 -0.40 -1.16 16 23 C -0.15 -1.35 10.15 -41.41 -0.42 -1.77 16 24 C -0.24 -1.97 10.92 29.18 0.32 -1.65 16 25 S 0.20 1.88 22.16 -107.50 -2.38 -0.50 16 26 C -0.14 -2.67 6.22 -24.25 -0.15 -2.82 16 27 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 30 H 0.05 0.86 6.47 -51.93 -0.34 0.52 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.39 5.17 7.14 -40.82 -0.29 4.88 16 33 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.05 0.87 7.38 -51.93 -0.38 0.49 16 LS Contribution 315.30 15.07 4.75 4.75 Total: -1.00 -30.84 315.30 -9.60 -40.43 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.61 Total: 6.23 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.37 Total: -5.49 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.04 Total: -51.88 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.38 Total: -0.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.84 -9.60 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095127884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.482 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds