Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99531 * 2 1 4 4 H 1.48502 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47257 * 300.00123 * 3 2 1 6 6 H 1.48504 * 109.47182 * 60.00338 * 3 2 1 7 7 C 1.38809 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00065 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.50242 * 130.83918 * 0.03144 * 9 7 2 11 11 H 1.09000 * 115.85880 * 0.33662 * 10 9 7 12 12 C 1.55848 * 101.05043 * 234.65914 * 10 9 7 13 13 C 1.57719 * 103.12257 * 325.96155 * 12 10 9 14 14 C 1.50243 * 130.83907 * 179.97438 * 9 7 2 15 15 H 1.09002 * 115.85427 * 359.66929 * 14 9 7 16 16 C 1.55840 * 101.05254 * 233.99335 * 14 9 7 17 17 H 1.09000 * 110.63102 * 85.71121 * 16 14 9 18 18 N 1.46501 * 110.62498 * 208.57434 * 16 14 9 19 19 C 1.34777 * 119.99665 * 274.05045 * 18 16 14 20 20 O 1.21704 * 120.00175 * 0.02562 * 19 18 16 21 21 C 1.46586 * 119.99658 * 179.97438 * 19 18 16 22 22 C 1.36651 * 125.45488 * 180.02562 * 21 19 18 23 23 C 1.37481 * 113.29436 * 179.72417 * 22 21 19 24 24 C 1.33820 * 115.09758 * 0.45720 * 23 22 21 25 25 S 1.70613 * 110.95610 * 359.55897 * 24 23 22 26 26 C 1.54857 * 103.44491 * 327.06173 * 16 14 9 27 27 H 0.96996 * 120.00702 * 359.97438 * 1 2 3 28 28 H 1.08996 * 110.62482 * 85.54913 * 12 10 9 29 29 H 1.08999 * 110.62416 * 208.42063 * 12 10 9 30 30 H 1.09002 * 111.90513 * 242.54048 * 13 12 10 31 31 H 1.08991 * 110.06469 * 119.01661 * 13 12 10 32 32 H 0.96997 * 120.00108 * 94.05253 * 18 16 14 33 33 H 1.07992 * 123.35495 * 359.97438 * 22 21 19 34 34 H 1.07997 * 122.45197 * 180.28164 * 23 22 21 35 35 H 1.07996 * 124.51801 * 179.83154 * 24 23 22 36 36 H 1.08998 * 110.62631 * 118.49198 * 26 16 14 37 37 H 1.09002 * 110.62540 * 241.50909 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0007 11 1 -0.8013 -1.7967 -0.0065 12 6 -0.2770 -3.5957 1.2471 13 6 1.0793 -4.4007 1.2356 14 6 1.8189 -3.8072 -0.0016 15 1 2.9015 -3.9342 -0.0081 16 6 1.0667 -4.3840 -1.2385 17 1 1.6254 -4.1878 -2.1536 18 7 0.8331 -5.8211 -1.0764 19 6 1.7828 -6.7039 -1.4441 20 8 2.8346 -6.3071 -1.9104 21 6 1.5492 -8.1418 -1.2814 22 6 2.4312 -9.1309 -1.6150 23 6 1.9572 -10.3940 -1.3506 24 6 0.7261 -10.4403 -0.8279 25 16 0.0898 -8.8704 -0.6251 26 6 -0.2745 -3.6098 -1.2376 27 1 -0.4851 0.8400 0.0004 28 1 -0.3864 -3.0028 2.1551 29 1 -1.1173 -4.2805 1.1333 30 1 0.9159 -5.4709 1.1081 31 1 1.6393 -4.2028 2.1495 32 1 -0.0051 -6.1373 -0.7045 33 1 3.4053 -8.9393 -2.0400 34 1 2.5348 -11.2838 -1.5527 35 1 0.2067 -11.3500 -0.5650 36 1 -0.3821 -3.0272 -2.1525 37 1 -1.1134 -4.2951 -1.1166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095127884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = 30.436169 kcal Electronic energy + Delta-G solvation = -21227.088713 eV Core-core repulsion = 18096.746429 eV Total energy + Delta-G solvation = -3130.342284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48778 -39.93001 -38.28116 -35.52868 -34.22094 -31.29470 -30.93026 -30.46657 -29.06717 -26.38177 -25.59425 -23.19166 -22.51640 -21.34628 -20.49917 -19.95954 -19.59498 -18.78451 -17.15274 -16.94522 -16.75639 -16.46437 -15.95782 -15.87487 -15.41830 -14.77893 -14.16688 -14.04382 -13.75611 -13.64066 -13.48892 -13.29806 -13.09147 -12.89092 -12.80512 -12.63148 -12.37957 -11.99070 -11.92776 -11.89157 -11.53086 -11.30400 -11.11605 -11.00298 -10.83684 -10.16380 -9.78844 -9.48246 -8.87119 -7.80200 -5.19710 -0.45298 0.52893 0.97809 1.45444 1.46924 1.47163 1.56797 2.08325 2.20035 2.49900 3.33275 3.49309 3.76177 3.95006 4.08311 4.14192 4.18622 4.30920 4.39641 4.45951 4.58964 4.59449 4.68944 4.76750 4.94060 5.01685 5.06679 5.12125 5.15639 5.26721 5.30485 5.39877 5.43401 5.51916 5.70285 5.86782 6.26217 6.49004 7.04829 7.15362 7.68012 8.54075 9.26849 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036654 B = 0.003907 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.722698 B = 7164.682359 C = 7542.795599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.061 4.061 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.070 0.930 9 N -0.617 5.617 10 C 0.138 3.862 11 H 0.123 0.877 12 C -0.123 4.123 13 C -0.119 4.119 14 C 0.118 3.882 15 H 0.064 0.936 16 C 0.145 3.855 17 H 0.055 0.945 18 N -0.694 5.694 19 C 0.583 3.417 20 O -0.580 6.580 21 C -0.300 4.300 22 C -0.063 4.063 23 C -0.160 4.160 24 C -0.217 4.217 25 S 0.240 5.760 26 C -0.126 4.126 27 H 0.250 0.750 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.408 0.592 33 H 0.143 0.857 34 H 0.169 0.831 35 H 0.203 0.797 36 H 0.051 0.949 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 -22.701 -0.035 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.254 4.254 3 Si 0.805 3.195 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.032 3.968 11 H 0.140 0.860 12 C -0.162 4.162 13 C -0.158 4.158 14 C 0.010 3.990 15 H 0.082 0.918 16 C 0.039 3.961 17 H 0.074 0.926 18 N -0.346 5.346 19 C 0.371 3.629 20 O -0.462 6.462 21 C -0.421 4.421 22 C -0.097 4.097 23 C -0.190 4.190 24 C -0.355 4.355 25 S 0.507 5.493 26 C -0.165 4.165 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.246 0.754 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.220 0.780 36 H 0.069 0.931 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.097 -21.514 0.208 22.110 hybrid contribution 1.882 0.577 -0.544 2.042 sum -3.215 -20.937 -0.336 21.185 Atomic orbital electron populations 1.69660 1.05829 1.25049 1.58699 1.25393 0.96565 1.00096 1.03331 0.85039 0.77823 0.79824 0.76810 1.20001 1.21838 1.21707 1.19332 0.90480 0.83534 1.42088 0.91192 1.46723 1.03044 0.99322 1.84782 1.23690 0.85936 0.95602 0.91556 0.85954 1.23394 0.96513 0.97682 0.98653 1.23323 0.96801 0.98801 0.96896 1.23289 0.95763 0.85005 0.94946 0.91775 1.22177 0.97655 0.78234 0.98080 0.92636 1.45867 1.19006 1.05849 1.63840 1.17443 0.83337 0.85101 0.77055 1.90802 1.27520 1.80477 1.47380 1.24562 1.03628 0.96069 1.17801 1.21016 0.99938 0.91692 0.97102 1.20225 0.96814 0.98056 1.03880 1.25802 1.00371 1.03773 1.05575 1.82862 1.13552 0.96352 1.56512 1.23122 0.95060 0.98217 1.00125 0.94067 0.94137 0.89549 0.89746 0.93837 0.75415 0.83966 0.81330 0.78044 0.93065 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 10.47 21.65 0.23 -54.53 16 2 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 3 Si 0.98 46.49 29.55 68.60 2.03 48.51 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.23 -12.93 10.59 84.03 0.89 -12.04 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.62 -31.76 2.99 -615.23 -1.84 -33.60 16 10 C 0.14 6.22 4.67 46.21 0.22 6.43 16 11 H 0.12 6.41 5.52 -2.39 -0.01 6.39 16 12 C -0.12 -4.55 6.58 33.25 0.22 -4.33 16 13 C -0.12 -4.29 6.48 33.26 0.22 -4.08 16 14 C 0.12 5.13 5.30 46.24 0.25 5.38 16 15 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 16 C 0.15 5.56 3.08 46.61 0.14 5.70 16 17 H 0.06 2.46 7.70 -2.39 -0.02 2.44 16 18 N -0.69 -20.70 3.59 -438.94 -1.58 -22.28 16 19 C 0.58 18.89 7.78 86.42 0.67 19.57 16 20 O -0.58 -24.14 16.57 -4.36 -0.07 -24.21 16 21 C -0.30 -7.30 6.45 24.08 0.16 -7.15 16 22 C -0.06 -1.37 10.01 21.72 0.22 -1.15 16 23 C -0.16 -2.33 10.15 21.09 0.21 -2.12 16 24 C -0.22 -2.56 10.92 66.82 0.73 -1.83 16 25 S 0.24 3.63 22.16 -56.49 -1.25 2.37 16 26 C -0.13 -4.68 6.22 32.20 0.20 -4.48 16 27 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 2.45 7.85 -2.39 -0.02 2.43 16 30 H 0.08 2.50 6.47 -2.39 -0.02 2.48 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.41 9.44 7.14 -92.71 -0.66 8.78 16 33 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.10 2.75 7.38 -2.39 -0.02 2.73 16 Total: -1.00 -70.94 315.30 2.53 -68.41 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.43 Total: 18.43 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.58 Total: -3.10 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.19 Total: -110.41 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.07 Total: -24.21 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.25 Total: 2.37 kcal Total: -70.94 2.53 -68.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095127884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.844 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds