Wall clock time and date at job start Tue Mar 31 2020 06:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00264 * 2 1 4 4 H 1.48502 * 109.47018 * 270.00063 * 3 2 1 5 5 H 1.48500 * 109.46965 * 29.99996 * 3 2 1 6 6 H 1.48500 * 109.47277 * 149.99950 * 3 2 1 7 7 C 1.38817 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.50241 * 130.84272 * 0.02562 * 9 7 2 11 11 H 1.09001 * 115.85775 * 0.34503 * 10 9 7 12 12 C 1.55841 * 101.05507 * 233.95425 * 10 9 7 13 13 C 1.55876 * 103.52921 * 327.66589 * 12 10 9 14 14 C 1.50241 * 130.83733 * 179.97438 * 9 7 2 15 15 H 1.08999 * 115.85702 * 359.66155 * 14 9 7 16 16 C 1.55848 * 101.05138 * 233.98249 * 14 9 7 17 17 H 1.09001 * 110.62398 * 85.55248 * 16 14 9 18 18 N 1.46499 * 110.62795 * 208.57219 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.02519 * 18 16 14 20 20 O 1.21641 * 119.99791 * 359.97438 * 19 18 16 21 21 C 1.47184 * 119.99966 * 180.02562 * 19 18 16 22 22 C 1.44428 * 123.46173 * 179.72253 * 21 19 18 23 23 C 1.32775 * 113.08260 * 179.80733 * 22 21 19 24 24 S 1.75504 * 110.57404 * 0.44960 * 23 22 21 25 25 C 1.36013 * 123.46201 * 0.02689 * 21 19 18 26 26 C 1.54850 * 103.44495 * 327.06474 * 16 14 9 27 27 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.62754 * 85.55108 * 12 10 9 29 29 H 1.08997 * 110.62782 * 208.41310 * 12 10 9 30 30 H 1.09004 * 110.10034 * 241.14157 * 13 12 10 31 31 H 1.09000 * 111.60397 * 117.80726 * 13 12 10 32 32 H 0.96993 * 120.00088 * 94.02333 * 18 16 14 33 33 H 1.07996 * 123.45525 * 0.02562 * 22 21 19 34 34 H 1.07996 * 124.70927 * 180.18395 * 23 22 21 35 35 H 1.07996 * 124.58922 * 0.02562 * 25 21 19 36 36 H 1.09000 * 110.62664 * 241.50617 * 26 16 14 37 37 H 1.09004 * 110.62989 * 118.48767 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1501 -2.6706 -0.0005 11 1 -0.8014 -1.7966 -0.0073 12 6 -0.2752 -3.6102 1.2365 13 6 1.0804 -4.3794 1.2488 14 6 1.8187 -3.8072 0.0005 15 1 2.9012 -3.9343 -0.0053 16 6 1.0671 -4.3846 -1.2366 17 1 1.6251 -4.1864 -2.1518 18 7 0.8333 -5.8216 -1.0741 19 6 1.7829 -6.7047 -1.4413 20 8 2.8340 -6.3084 -1.9082 21 6 1.5478 -8.1485 -1.2785 22 6 2.5097 -9.1591 -1.6518 23 6 2.0865 -10.3945 -1.4120 24 16 0.4720 -10.3707 -0.7243 25 6 0.3999 -8.6683 -0.7666 26 6 -0.2739 -3.6103 -1.2369 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3833 -3.0279 2.1516 29 1 -1.1158 -4.2935 1.1162 30 1 0.9052 -5.4491 1.1341 31 1 1.6482 -4.1774 2.1571 32 1 -0.0049 -6.1376 -0.7021 33 1 3.4756 -8.9329 -2.0788 34 1 2.6550 -11.2897 -1.6161 35 1 -0.4433 -8.0819 -0.4329 36 1 -1.1130 -4.2955 -1.1162 37 1 -0.3810 -3.0281 -2.1522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095150883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:35 Heat of formation + Delta-G solvation = 46.842119 kcal Electronic energy + Delta-G solvation = -21255.784529 eV Core-core repulsion = 18126.153661 eV Total energy + Delta-G solvation = -3129.630868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10821 -38.59745 -36.67892 -33.97109 -32.34312 -30.21870 -29.16086 -28.96711 -27.45722 -25.04796 -24.07030 -21.87355 -21.11545 -19.66999 -19.09429 -18.71408 -17.97309 -17.11349 -16.79462 -15.36356 -15.07013 -14.79621 -14.45303 -14.17838 -13.85480 -13.36791 -13.18309 -12.88159 -12.60200 -12.28468 -12.20266 -11.76290 -11.49561 -11.28595 -11.03487 -10.90765 -10.88633 -10.81554 -10.22361 -10.09043 -9.85793 -9.67654 -9.38063 -9.24765 -9.23673 -8.93275 -8.67476 -8.43930 -6.91032 -5.72421 -3.10156 0.63161 1.35898 1.72681 1.95598 3.39856 3.43786 3.46350 3.48910 3.53364 4.46236 4.58552 4.98146 5.11146 5.20826 5.23624 5.39079 5.56681 5.65500 5.80050 5.85254 5.91018 5.95530 6.07798 6.11004 6.13053 6.30174 6.32954 6.53384 6.60434 6.67810 6.81118 6.96701 7.00087 7.26690 7.52961 7.74281 7.84747 8.16988 8.49549 9.11023 9.73548 10.53902 11.37361 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037255 B = 0.003701 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.392814 B = 7563.255345 C = 7927.124695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.136 4.136 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.129 3.871 17 H 0.084 0.916 18 N -0.705 5.705 19 C 0.569 3.431 20 O -0.538 6.538 21 C -0.146 4.146 22 C -0.085 4.085 23 C -0.238 4.238 24 S 0.172 5.828 25 C -0.214 4.214 26 C -0.141 4.141 27 H 0.254 0.746 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.393 0.607 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.054 0.946 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -20.082 -0.737 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.172 0.828 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.023 3.977 17 H 0.102 0.898 18 N -0.355 5.355 19 C 0.354 3.646 20 O -0.416 6.416 21 C -0.164 4.164 22 C -0.114 4.114 23 C -0.373 4.373 24 S 0.437 5.563 25 C -0.352 4.352 26 C -0.181 4.181 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.227 0.773 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.187 0.813 36 H 0.072 0.928 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.018 -20.536 -0.597 20.765 hybrid contribution 1.013 1.724 -0.254 2.016 sum -2.006 -18.812 -0.851 18.937 Atomic orbital electron populations 1.69430 1.05001 1.24966 1.57869 1.24693 0.95648 0.97499 1.02915 0.86024 0.78511 0.83124 0.77571 1.21643 1.21696 1.20749 1.19077 0.90403 0.81860 1.42395 0.90286 1.46488 1.01566 0.98835 1.84169 1.23762 0.87779 0.95168 0.88588 0.82797 1.23220 0.94921 0.98177 1.01259 1.23069 0.97477 0.97489 0.98893 1.23203 0.96306 0.86090 0.92476 0.89721 1.22658 0.98195 0.76493 1.00340 0.89834 1.46106 1.18480 1.07290 1.63660 1.17589 0.84094 0.84620 0.78302 1.90793 1.25703 1.80055 1.45090 1.20506 0.94796 0.95011 1.06062 1.21192 1.00324 0.90232 0.99630 1.25488 1.00242 1.01631 1.09902 1.82988 1.13205 1.00219 1.59929 1.25667 1.02444 1.00882 1.06178 1.23305 0.93869 0.98446 1.02490 0.93578 0.92723 0.93652 0.93267 0.92861 0.77264 0.82852 0.81442 0.81303 0.92796 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.47 55.49 0.58 -25.61 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.21 -5.81 10.59 -15.06 -0.16 -5.97 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.59 -14.79 2.98 -145.81 -0.43 -15.23 16 10 C 0.15 3.45 4.71 -62.83 -0.30 3.16 16 11 H 0.16 3.95 5.52 -51.93 -0.29 3.66 16 12 C -0.14 -2.62 6.46 -23.68 -0.15 -2.78 16 13 C -0.13 -2.43 6.42 -23.64 -0.15 -2.58 16 14 C 0.13 2.74 5.30 -62.76 -0.33 2.40 16 15 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 16 C 0.13 2.45 3.08 -65.44 -0.20 2.25 16 17 H 0.08 1.78 7.70 -51.93 -0.40 1.38 16 18 N -0.70 -10.77 3.63 -52.54 -0.19 -10.96 16 19 C 0.57 9.26 7.79 -12.63 -0.10 9.16 16 20 O -0.54 -10.86 16.53 5.24 0.09 -10.77 16 21 C -0.15 -1.87 5.98 -104.63 -0.63 -2.49 16 22 C -0.08 -0.97 10.10 -39.02 -0.39 -1.37 16 23 C -0.24 -2.09 11.12 28.86 0.32 -1.77 16 24 S 0.17 1.36 23.02 -107.50 -2.48 -1.11 16 25 C -0.21 -2.11 10.38 29.93 0.31 -1.80 16 26 C -0.14 -2.68 6.20 -24.26 -0.15 -2.83 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 30 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.39 4.88 6.55 -40.82 -0.27 4.61 16 33 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.17 1.33 7.01 -52.49 -0.37 0.96 16 36 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -31.24 314.45 -9.28 -40.52 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.53 Total: 6.41 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.03 Total: -5.05 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.04 Total: -51.80 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.48 Total: -1.11 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.24 -9.28 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095150883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.362 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds