Wall clock time and date at job start Tue Mar 31 2020 06:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00264 * 2 1 4 4 H 1.48502 * 109.47018 * 270.00063 * 3 2 1 5 5 H 1.48500 * 109.46965 * 29.99996 * 3 2 1 6 6 H 1.48500 * 109.47277 * 149.99950 * 3 2 1 7 7 C 1.38817 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.50241 * 130.84272 * 0.02562 * 9 7 2 11 11 H 1.09001 * 115.85775 * 0.34503 * 10 9 7 12 12 C 1.55841 * 101.05507 * 233.95425 * 10 9 7 13 13 C 1.55876 * 103.52921 * 327.66589 * 12 10 9 14 14 C 1.50241 * 130.83733 * 179.97438 * 9 7 2 15 15 H 1.08999 * 115.85702 * 359.66155 * 14 9 7 16 16 C 1.55848 * 101.05138 * 233.98249 * 14 9 7 17 17 H 1.09001 * 110.62398 * 85.55248 * 16 14 9 18 18 N 1.46499 * 110.62795 * 208.57219 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.02519 * 18 16 14 20 20 O 1.21641 * 119.99791 * 359.97438 * 19 18 16 21 21 C 1.47184 * 119.99966 * 180.02562 * 19 18 16 22 22 C 1.44428 * 123.46173 * 179.72253 * 21 19 18 23 23 C 1.32775 * 113.08260 * 179.80733 * 22 21 19 24 24 S 1.75504 * 110.57404 * 0.44960 * 23 22 21 25 25 C 1.36013 * 123.46201 * 0.02689 * 21 19 18 26 26 C 1.54850 * 103.44495 * 327.06474 * 16 14 9 27 27 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.62754 * 85.55108 * 12 10 9 29 29 H 1.08997 * 110.62782 * 208.41310 * 12 10 9 30 30 H 1.09004 * 110.10034 * 241.14157 * 13 12 10 31 31 H 1.09000 * 111.60397 * 117.80726 * 13 12 10 32 32 H 0.96993 * 120.00088 * 94.02333 * 18 16 14 33 33 H 1.07996 * 123.45525 * 0.02562 * 22 21 19 34 34 H 1.07996 * 124.70927 * 180.18395 * 23 22 21 35 35 H 1.07996 * 124.58922 * 0.02562 * 25 21 19 36 36 H 1.09000 * 110.62664 * 241.50617 * 26 16 14 37 37 H 1.09004 * 110.62989 * 118.48767 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1501 -2.6706 -0.0005 11 1 -0.8014 -1.7966 -0.0073 12 6 -0.2752 -3.6102 1.2365 13 6 1.0804 -4.3794 1.2488 14 6 1.8187 -3.8072 0.0005 15 1 2.9012 -3.9343 -0.0053 16 6 1.0671 -4.3846 -1.2366 17 1 1.6251 -4.1864 -2.1518 18 7 0.8333 -5.8216 -1.0741 19 6 1.7829 -6.7047 -1.4413 20 8 2.8340 -6.3084 -1.9082 21 6 1.5478 -8.1485 -1.2785 22 6 2.5097 -9.1591 -1.6518 23 6 2.0865 -10.3945 -1.4120 24 16 0.4720 -10.3707 -0.7243 25 6 0.3999 -8.6683 -0.7666 26 6 -0.2739 -3.6103 -1.2369 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3833 -3.0279 2.1516 29 1 -1.1158 -4.2935 1.1162 30 1 0.9052 -5.4491 1.1341 31 1 1.6482 -4.1774 2.1571 32 1 -0.0049 -6.1376 -0.7021 33 1 3.4756 -8.9329 -2.0788 34 1 2.6550 -11.2897 -1.6161 35 1 -0.4433 -8.0819 -0.4329 36 1 -1.1130 -4.2955 -1.1162 37 1 -0.3810 -3.0281 -2.1522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095150883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:35 Heat of formation + Delta-G solvation = 27.573546 kcal Electronic energy + Delta-G solvation = -21256.620077 eV Core-core repulsion = 18126.153661 eV Total energy + Delta-G solvation = -3130.466416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53662 -39.99326 -37.65846 -35.51553 -34.23598 -31.28742 -30.97545 -30.44683 -28.99511 -26.37972 -25.62776 -23.14887 -22.47293 -21.37650 -20.34000 -20.09023 -19.09632 -18.62473 -18.01891 -16.86739 -16.63711 -16.50105 -15.91905 -15.50078 -15.38963 -14.53784 -14.13903 -13.91741 -13.89172 -13.67682 -13.46170 -13.36850 -13.17775 -12.88683 -12.78856 -12.60081 -12.38700 -12.05024 -12.00543 -11.91754 -11.57492 -11.21295 -11.06431 -10.86988 -10.81005 -10.09761 -9.93039 -9.29582 -8.86695 -7.80675 -5.19919 -0.16456 0.67948 0.99642 1.04683 1.45750 1.47121 1.55232 2.18619 2.38975 2.50321 3.32927 3.50293 3.83018 3.92902 4.02658 4.11452 4.15443 4.36017 4.38036 4.45848 4.50843 4.59385 4.69388 4.78569 4.87749 4.95554 5.04467 5.12901 5.15882 5.22389 5.29911 5.32566 5.44810 5.53669 5.72999 5.87754 6.26611 6.61598 7.04858 7.28203 7.67857 8.54030 9.26273 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037255 B = 0.003701 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.392814 B = 7563.255345 C = 7927.124695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.061 4.061 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.227 4.227 8 H 0.069 0.931 9 N -0.619 5.619 10 C 0.138 3.862 11 H 0.123 0.877 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.118 3.882 15 H 0.061 0.939 16 C 0.147 3.853 17 H 0.051 0.949 18 N -0.691 5.691 19 C 0.569 3.431 20 O -0.590 6.590 21 C -0.181 4.181 22 C -0.115 4.115 23 C -0.233 4.233 24 S 0.249 5.751 25 C -0.207 4.207 26 C -0.126 4.126 27 H 0.250 0.750 28 H 0.035 0.965 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.412 0.588 33 H 0.138 0.862 34 H 0.194 0.806 35 H 0.194 0.806 36 H 0.098 0.902 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -23.247 0.045 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.254 4.254 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.356 4.356 8 H 0.087 0.913 9 N -0.341 5.341 10 C 0.032 3.968 11 H 0.140 0.860 12 C -0.163 4.163 13 C -0.155 4.155 14 C 0.010 3.990 15 H 0.079 0.921 16 C 0.040 3.960 17 H 0.069 0.931 18 N -0.343 5.343 19 C 0.356 3.644 20 O -0.472 6.472 21 C -0.199 4.199 22 C -0.143 4.143 23 C -0.368 4.368 24 S 0.515 5.485 25 C -0.346 4.346 26 C -0.165 4.165 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.250 0.750 33 H 0.156 0.844 34 H 0.211 0.789 35 H 0.211 0.789 36 H 0.117 0.883 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.899 -23.764 0.200 24.265 hybrid contribution 1.567 2.542 -0.496 3.027 sum -3.332 -21.222 -0.296 21.484 Atomic orbital electron populations 1.69652 1.05827 1.25116 1.58644 1.25396 0.96572 1.00102 1.03320 0.85113 0.77538 0.79572 0.77306 1.21617 1.21566 1.20224 1.19298 0.90462 0.83633 1.42217 0.91290 1.46745 1.03105 0.99377 1.84832 1.23703 0.85875 0.95517 0.91691 0.85977 1.23116 0.96578 0.97991 0.98585 1.22965 0.96565 0.99192 0.96763 1.23323 0.95702 0.84975 0.95040 0.92059 1.22090 0.97449 0.78747 0.97697 0.93051 1.45793 1.19325 1.05393 1.63763 1.18164 0.83124 0.86230 0.76876 1.90765 1.27856 1.81177 1.47391 1.20197 0.96973 0.92748 1.09992 1.21164 1.00277 0.91278 1.01628 1.25848 1.01277 1.01460 1.08194 1.82839 1.11072 0.97408 1.57206 1.26053 1.01726 1.02982 1.03817 1.23134 0.95175 0.98232 0.99984 0.94059 0.94595 0.89120 0.89814 0.93840 0.74979 0.84393 0.78871 0.78908 0.88328 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.93 10.47 21.65 0.23 -54.71 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.98 46.64 29.55 68.60 2.03 48.66 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.23 -13.11 10.59 84.04 0.89 -12.22 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.62 -31.98 2.98 -615.21 -1.83 -33.81 16 10 C 0.14 6.20 4.71 46.21 0.22 6.42 16 11 H 0.12 6.40 5.52 -2.39 -0.01 6.38 16 12 C -0.12 -4.50 6.46 32.57 0.21 -4.29 16 13 C -0.12 -4.15 6.42 32.59 0.21 -3.94 16 14 C 0.12 5.12 5.30 46.25 0.25 5.36 16 15 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 16 C 0.15 5.60 3.08 46.61 0.14 5.74 16 17 H 0.05 2.29 7.70 -2.39 -0.02 2.27 16 18 N -0.69 -19.91 3.63 -438.38 -1.59 -21.50 16 19 C 0.57 18.28 7.79 86.59 0.67 18.95 16 20 O -0.59 -24.82 16.53 -4.16 -0.07 -24.89 16 21 C -0.18 -4.32 5.98 -19.87 -0.12 -4.44 16 22 C -0.11 -2.52 10.10 22.67 0.23 -2.29 16 23 C -0.23 -3.36 11.12 66.64 0.74 -2.62 16 24 S 0.25 2.77 23.02 -56.49 -1.30 1.47 16 25 C -0.21 -3.26 10.38 67.30 0.70 -2.56 16 26 C -0.13 -4.64 6.20 32.19 0.20 -4.44 16 27 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 2.49 7.82 -2.39 -0.02 2.47 16 30 H 0.08 2.41 6.56 -2.38 -0.02 2.40 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.41 8.56 6.55 -92.71 -0.61 7.95 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.19 1.95 7.01 -2.91 -0.02 1.93 16 36 H 0.10 2.72 7.34 -2.39 -0.02 2.71 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -72.81 314.45 2.76 -70.05 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.49 Total: 18.05 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.81 Total: -3.32 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.20 Total: -110.02 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.07 Total: -24.89 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.30 Total: 1.47 kcal Total: -72.81 2.76 -70.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095150883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.626 kcal (2) G-P(sol) polarization free energy of solvation -72.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds