Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99623 * 2 1 4 4 H 1.48493 * 109.47060 * 269.99881 * 3 2 1 5 5 H 1.48498 * 109.47055 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46960 * 149.99927 * 3 2 1 7 7 C 1.38810 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00245 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84094 * 359.97438 * 9 7 2 11 11 H 1.09002 * 115.85732 * 359.66289 * 10 9 7 12 12 C 1.55848 * 101.05163 * 233.98621 * 10 9 7 13 13 C 1.54853 * 103.44532 * 327.06431 * 12 10 9 14 14 C 1.50240 * 130.83587 * 180.02562 * 9 7 2 15 15 H 1.08997 * 115.85750 * 0.33431 * 14 9 7 16 16 C 1.55847 * 101.05077 * 233.94644 * 14 9 7 17 17 H 1.08997 * 110.63054 * 208.57623 * 16 14 9 18 18 N 1.46498 * 110.62550 * 85.54990 * 16 14 9 19 19 C 1.34775 * 119.99972 * 154.99826 * 18 16 14 20 20 O 1.21703 * 120.00265 * 0.02562 * 19 18 16 21 21 C 1.46581 * 120.00176 * 180.02562 * 19 18 16 22 22 C 1.36650 * 125.45970 * 179.72068 * 21 19 18 23 23 C 1.37478 * 113.29647 * 179.83719 * 22 21 19 24 24 C 1.33814 * 115.09986 * 0.45584 * 23 22 21 25 25 S 1.70615 * 110.95580 * 359.74702 * 24 23 22 26 26 C 1.55846 * 101.04996 * 125.33662 * 10 9 7 27 27 H 0.96994 * 120.00344 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.62572 * 85.55135 * 12 10 9 29 29 H 1.09000 * 110.62759 * 208.57017 * 12 10 9 30 30 H 1.08997 * 110.62526 * 241.50943 * 13 12 10 31 31 H 1.09000 * 110.76127 * 118.55016 * 13 12 10 32 32 H 0.97000 * 120.00208 * 335.00379 * 18 16 14 33 33 H 1.07995 * 123.34988 * 0.02562 * 22 21 19 34 34 H 1.08003 * 122.44768 * 180.17567 * 23 22 21 35 35 H 1.08004 * 124.52225 * 179.76510 * 24 23 22 36 36 H 1.09006 * 110.62360 * 151.42720 * 26 10 9 37 37 H 1.09001 * 110.62907 * 274.44846 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8013 -1.7966 0.0063 12 6 -0.2741 -3.6101 1.2378 13 6 1.0670 -4.3843 1.2381 14 6 1.8189 -3.8071 0.0016 15 1 2.9014 -3.9342 0.0082 16 6 1.0676 -4.3854 -1.2354 17 1 0.8936 -5.4545 -1.1138 18 7 1.8177 -4.1197 -2.4654 19 6 1.6541 -4.9167 -3.5399 20 8 0.8829 -5.8567 -3.4886 21 6 2.4051 -4.6512 -4.7704 22 6 2.3299 -5.3872 -5.9193 23 6 3.1410 -4.9129 -6.9229 24 6 3.8635 -3.8321 -6.6058 25 16 3.5526 -3.3393 -5.0022 26 6 -0.2769 -3.5956 -1.2472 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3815 -3.0277 2.1529 29 1 -1.1131 -4.2954 1.1169 30 1 0.8931 -5.4535 1.1174 31 1 1.6260 -4.1882 2.1531 32 1 2.4323 -3.3704 -2.5065 33 1 1.6943 -6.2534 -6.0291 34 1 3.1947 -5.3812 -7.8947 35 1 4.5513 -3.3375 -7.2757 36 1 -1.1156 -4.2823 -1.1323 37 1 -0.3863 -3.0027 -2.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096753230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = 42.302096 kcal Electronic energy + Delta-G solvation = -21295.771103 eV Core-core repulsion = 18165.943364 eV Total energy + Delta-G solvation = -3129.827739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80763 -38.57445 -37.25536 -33.80545 -32.54466 -30.09043 -29.12284 -28.73886 -27.64605 -24.89932 -24.15361 -22.00326 -20.43503 -19.88389 -19.24140 -18.72786 -18.10475 -17.01278 -16.04407 -15.65837 -15.11826 -14.82255 -14.58508 -13.93783 -13.83969 -13.44568 -12.97880 -12.84805 -12.70458 -12.28567 -12.05603 -11.83531 -11.27614 -11.13511 -10.95580 -10.93701 -10.91060 -10.54560 -10.36770 -10.11475 -9.94674 -9.82817 -9.29374 -9.18952 -8.99668 -8.92934 -8.63469 -8.44076 -6.96768 -5.76064 -3.15499 0.54259 1.48599 1.89622 2.41715 3.34719 3.39931 3.42136 3.44843 3.55966 4.39022 4.89037 5.06345 5.11742 5.28264 5.34100 5.42764 5.61586 5.68143 5.86420 5.90117 6.02627 6.06623 6.11743 6.18324 6.28047 6.30204 6.41175 6.47813 6.59385 6.72372 6.81397 6.94224 7.08593 7.31608 7.45301 7.77374 7.91722 8.15526 8.51515 9.05387 9.68692 10.49649 11.32812 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.005732 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.486024 B = 4883.421316 C = 6251.557538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.152 3.848 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.128 4.128 14 C 0.124 3.876 15 H 0.088 0.912 16 C 0.128 3.872 17 H 0.084 0.916 18 N -0.700 5.700 19 C 0.583 3.417 20 O -0.542 6.542 21 C -0.256 4.256 22 C -0.067 4.067 23 C -0.151 4.151 24 C -0.242 4.242 25 S 0.214 5.786 26 C -0.142 4.142 27 H 0.254 0.746 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.401 0.599 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.166 0.834 36 H 0.054 0.946 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -7.878 -8.720 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.312 5.312 10 C 0.046 3.954 11 H 0.170 0.830 12 C -0.177 4.177 13 C -0.168 4.168 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.022 3.978 17 H 0.102 0.898 18 N -0.348 5.348 19 C 0.369 3.631 20 O -0.422 6.422 21 C -0.377 4.377 22 C -0.100 4.100 23 C -0.182 4.182 24 C -0.380 4.380 25 S 0.482 5.518 26 C -0.182 4.182 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.184 0.816 36 H 0.072 0.928 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.883 -6.983 -7.723 11.959 hybrid contribution 0.320 0.050 -1.150 1.194 sum 6.203 -6.933 -8.872 12.855 Atomic orbital electron populations 1.69461 1.05006 1.25009 1.57179 1.24697 0.95581 0.97466 1.02743 0.86084 0.78532 0.83397 0.77543 1.21663 1.21682 1.20767 1.19001 0.90212 0.81898 1.43241 0.90383 1.46551 1.01660 0.98565 1.84426 1.23752 0.87372 0.95463 0.88818 0.83043 1.23045 0.95238 0.98243 1.01197 1.22877 0.97727 0.97672 0.98508 1.23167 0.96079 0.87019 0.92168 0.89374 1.22959 0.92732 0.98768 0.83320 0.89844 1.45934 1.45118 1.30946 1.12849 1.16975 0.81548 0.82633 0.81976 1.90782 1.37727 1.30607 1.83107 1.24867 1.08337 1.04188 1.00325 1.20761 0.98668 0.99966 0.90649 1.20008 0.99131 0.97960 1.01110 1.25344 1.07179 1.03151 1.02287 1.83390 1.35139 1.27021 1.06293 1.23629 0.94780 0.98238 1.01563 0.93517 0.92552 0.93278 0.92959 0.92390 0.76461 0.83097 0.84028 0.81619 0.92783 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.52 10.47 55.49 0.58 -24.94 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.22 -5.57 10.59 -15.06 -0.16 -5.73 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.59 -13.88 2.98 -145.83 -0.43 -14.31 16 10 C 0.15 3.45 4.67 -62.80 -0.29 3.16 16 11 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 12 C -0.14 -2.71 6.46 -24.23 -0.16 -2.86 16 13 C -0.13 -2.31 6.44 -24.26 -0.16 -2.46 16 14 C 0.12 2.42 5.06 -62.82 -0.32 2.10 16 15 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.13 2.43 2.85 -64.85 -0.18 2.25 16 17 H 0.08 1.57 7.23 -51.93 -0.38 1.20 16 18 N -0.70 -12.64 5.07 -52.17 -0.26 -12.90 16 19 C 0.58 10.51 7.78 -12.90 -0.10 10.41 16 20 O -0.54 -11.19 16.49 5.19 0.09 -11.10 16 21 C -0.26 -3.85 6.45 -36.79 -0.24 -4.09 16 22 C -0.07 -0.88 10.01 -40.43 -0.40 -1.29 16 23 C -0.15 -1.61 10.15 -41.41 -0.42 -2.03 16 24 C -0.24 -2.50 10.92 29.18 0.32 -2.18 16 25 S 0.21 2.66 22.16 -107.50 -2.38 0.28 16 26 C -0.14 -2.92 6.28 -23.65 -0.15 -3.07 16 27 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.86 7.85 -51.93 -0.41 0.45 16 30 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 7.08 7.77 -40.82 -0.32 6.76 16 33 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.05 1.04 7.85 -51.93 -0.41 0.63 16 37 H 0.06 1.38 8.01 -51.93 -0.42 0.97 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -29.49 317.97 -9.70 -39.20 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.70 Total: 8.98 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.36 Total: -6.12 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.12 Total: -52.16 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.38 Total: 0.28 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.49 -9.70 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096753230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.498 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds