Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99623 * 2 1 4 4 H 1.48493 * 109.47060 * 269.99881 * 3 2 1 5 5 H 1.48498 * 109.47055 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46960 * 149.99927 * 3 2 1 7 7 C 1.38810 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00245 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84094 * 359.97438 * 9 7 2 11 11 H 1.09002 * 115.85732 * 359.66289 * 10 9 7 12 12 C 1.55848 * 101.05163 * 233.98621 * 10 9 7 13 13 C 1.54853 * 103.44532 * 327.06431 * 12 10 9 14 14 C 1.50240 * 130.83587 * 180.02562 * 9 7 2 15 15 H 1.08997 * 115.85750 * 0.33431 * 14 9 7 16 16 C 1.55847 * 101.05077 * 233.94644 * 14 9 7 17 17 H 1.08997 * 110.63054 * 208.57623 * 16 14 9 18 18 N 1.46498 * 110.62550 * 85.54990 * 16 14 9 19 19 C 1.34775 * 119.99972 * 154.99826 * 18 16 14 20 20 O 1.21703 * 120.00265 * 0.02562 * 19 18 16 21 21 C 1.46581 * 120.00176 * 180.02562 * 19 18 16 22 22 C 1.36650 * 125.45970 * 179.72068 * 21 19 18 23 23 C 1.37478 * 113.29647 * 179.83719 * 22 21 19 24 24 C 1.33814 * 115.09986 * 0.45584 * 23 22 21 25 25 S 1.70615 * 110.95580 * 359.74702 * 24 23 22 26 26 C 1.55846 * 101.04996 * 125.33662 * 10 9 7 27 27 H 0.96994 * 120.00344 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.62572 * 85.55135 * 12 10 9 29 29 H 1.09000 * 110.62759 * 208.57017 * 12 10 9 30 30 H 1.08997 * 110.62526 * 241.50943 * 13 12 10 31 31 H 1.09000 * 110.76127 * 118.55016 * 13 12 10 32 32 H 0.97000 * 120.00208 * 335.00379 * 18 16 14 33 33 H 1.07995 * 123.34988 * 0.02562 * 22 21 19 34 34 H 1.08003 * 122.44768 * 180.17567 * 23 22 21 35 35 H 1.08004 * 124.52225 * 179.76510 * 24 23 22 36 36 H 1.09006 * 110.62360 * 151.42720 * 26 10 9 37 37 H 1.09001 * 110.62907 * 274.44846 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8013 -1.7966 0.0063 12 6 -0.2741 -3.6101 1.2378 13 6 1.0670 -4.3843 1.2381 14 6 1.8189 -3.8071 0.0016 15 1 2.9014 -3.9342 0.0082 16 6 1.0676 -4.3854 -1.2354 17 1 0.8936 -5.4545 -1.1138 18 7 1.8177 -4.1197 -2.4654 19 6 1.6541 -4.9167 -3.5399 20 8 0.8829 -5.8567 -3.4886 21 6 2.4051 -4.6512 -4.7704 22 6 2.3299 -5.3872 -5.9193 23 6 3.1410 -4.9129 -6.9229 24 6 3.8635 -3.8321 -6.6058 25 16 3.5526 -3.3393 -5.0022 26 6 -0.2769 -3.5956 -1.2472 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3815 -3.0277 2.1529 29 1 -1.1131 -4.2954 1.1169 30 1 0.8931 -5.4535 1.1174 31 1 1.6260 -4.1882 2.1531 32 1 2.4323 -3.3704 -2.5065 33 1 1.6943 -6.2534 -6.0291 34 1 3.1947 -5.3812 -7.8947 35 1 4.5513 -3.3375 -7.2757 36 1 -1.1156 -4.2823 -1.1323 37 1 -0.3863 -3.0027 -2.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096753230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = 24.931869 kcal Electronic energy + Delta-G solvation = -21296.524332 eV Core-core repulsion = 18165.943364 eV Total energy + Delta-G solvation = -3130.580968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31137 -40.01094 -38.31450 -35.34521 -34.41914 -31.25588 -30.96341 -30.28027 -29.12841 -26.24711 -25.75766 -23.33049 -21.84742 -21.55869 -20.58476 -20.02070 -19.39680 -18.84156 -17.36948 -16.84331 -16.77493 -16.27533 -16.06461 -15.63091 -15.23225 -14.90716 -14.40774 -13.91511 -13.74496 -13.66719 -13.61855 -13.20945 -12.93132 -12.88054 -12.74924 -12.70324 -12.12902 -11.96092 -11.90207 -11.87364 -11.70639 -11.34024 -11.00180 -10.93693 -10.77431 -10.14111 -9.78869 -9.55275 -8.86672 -7.74526 -5.14783 -0.46941 0.50356 0.97591 1.44283 1.50202 1.50827 1.58844 2.15137 2.22901 2.51370 3.38432 3.44625 3.80280 4.00160 4.06202 4.14460 4.25993 4.37655 4.44195 4.46611 4.55452 4.62224 4.68213 4.82086 4.89171 5.03151 5.07645 5.15760 5.17631 5.22713 5.37720 5.39408 5.50769 5.57225 5.69100 5.89997 6.27816 6.50311 7.06703 7.11918 7.73513 8.59172 9.32745 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.005732 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.486024 B = 4883.421316 C = 6251.557538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.215 4.215 8 H 0.086 0.914 9 N -0.610 5.610 10 C 0.139 3.861 11 H 0.116 0.884 12 C -0.131 4.131 13 C -0.119 4.119 14 C 0.126 3.874 15 H 0.102 0.898 16 C 0.138 3.862 17 H 0.092 0.908 18 N -0.701 5.701 19 C 0.583 3.417 20 O -0.577 6.577 21 C -0.301 4.301 22 C -0.058 4.058 23 C -0.155 4.155 24 C -0.218 4.218 25 S 0.209 5.791 26 C -0.133 4.133 27 H 0.245 0.755 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.152 0.848 34 H 0.175 0.825 35 H 0.201 0.799 36 H 0.067 0.933 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.769 -8.923 -10.009 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.344 4.344 8 H 0.103 0.897 9 N -0.332 5.332 10 C 0.033 3.967 11 H 0.133 0.867 12 C -0.170 4.170 13 C -0.158 4.158 14 C 0.018 3.982 15 H 0.120 0.880 16 C 0.032 3.968 17 H 0.109 0.891 18 N -0.349 5.349 19 C 0.371 3.629 20 O -0.459 6.459 21 C -0.421 4.421 22 C -0.092 4.092 23 C -0.186 4.186 24 C -0.356 4.356 25 S 0.476 5.524 26 C -0.173 4.173 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.169 0.831 34 H 0.193 0.807 35 H 0.218 0.782 36 H 0.085 0.915 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.833 -8.051 -9.011 14.400 hybrid contribution -0.246 0.334 -0.854 0.950 sum 7.587 -7.717 -9.865 14.644 Atomic orbital electron populations 1.69717 1.06226 1.24788 1.59035 1.25419 0.96294 1.00319 1.03804 0.85154 0.77649 0.79774 0.77229 1.21631 1.22818 1.19518 1.19358 0.90780 0.82942 1.41329 0.89655 1.46733 1.02242 0.99599 1.84602 1.23591 0.86762 0.95270 0.91110 0.86685 1.22939 0.97290 0.97976 0.98777 1.22831 0.96223 0.99016 0.97772 1.23369 0.97091 0.84792 0.92911 0.87984 1.22797 0.91709 0.98643 0.83687 0.89054 1.45902 1.45056 1.31135 1.12848 1.17359 0.81112 0.81804 0.82633 1.90744 1.39371 1.31963 1.83868 1.24652 1.10733 1.06821 0.99878 1.21045 0.98221 0.99371 0.90602 1.20278 0.98390 0.98088 1.01813 1.25794 1.06369 1.02287 1.01115 1.83407 1.34470 1.26275 1.08272 1.23491 0.96570 0.97927 0.99361 0.94510 0.94122 0.91023 0.89956 0.91994 0.76331 0.83079 0.80739 0.78160 0.91450 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.54 10.47 21.65 0.23 -54.31 16 2 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 3 Si 0.97 44.07 29.55 68.60 2.03 46.09 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.22 -11.16 10.59 84.03 0.89 -10.27 16 8 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -28.73 2.98 -615.30 -1.83 -30.56 16 10 C 0.14 6.41 4.67 46.23 0.22 6.63 16 11 H 0.12 6.26 5.52 -2.39 -0.01 6.25 16 12 C -0.13 -5.03 6.46 32.21 0.21 -4.82 16 13 C -0.12 -4.03 6.44 32.20 0.21 -3.82 16 14 C 0.13 4.72 5.06 46.22 0.23 4.96 16 15 H 0.10 3.54 8.14 -2.39 -0.02 3.53 16 16 C 0.14 5.14 2.85 46.99 0.13 5.27 16 17 H 0.09 3.30 7.23 -2.39 -0.02 3.29 16 18 N -0.70 -25.26 5.07 -437.17 -2.22 -27.48 16 19 C 0.58 21.03 7.78 86.42 0.67 21.71 16 20 O -0.58 -23.91 16.49 -4.36 -0.07 -23.98 16 21 C -0.30 -8.82 6.45 24.08 0.16 -8.67 16 22 C -0.06 -1.42 10.01 21.72 0.22 -1.21 16 23 C -0.16 -2.79 10.15 21.08 0.21 -2.57 16 24 C -0.22 -3.72 10.92 66.81 0.73 -2.99 16 25 S 0.21 4.84 22.16 -56.49 -1.25 3.59 16 26 C -0.13 -5.55 6.28 32.59 0.20 -5.34 16 27 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.40 7.85 -2.39 -0.02 2.39 16 30 H 0.08 2.33 7.81 -2.39 -0.02 2.31 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.40 14.21 7.77 -92.71 -0.72 13.49 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.07 2.57 7.85 -2.38 -0.02 2.55 16 37 H 0.03 1.60 8.01 -2.39 -0.02 1.58 16 Total: -1.00 -65.16 317.97 1.80 -63.36 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.37 Total: 27.49 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 4.55 Total: -4.20 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -3.82 Total: -112.35 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.07 Total: -23.98 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.25 Total: 3.59 kcal Total: -65.16 1.80 -63.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096753230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.287 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds