Wall clock time and date at job start Tue Mar 31 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48501 * 109.47198 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46714 * 239.99666 * 3 2 1 6 6 H 1.48494 * 109.47197 * 119.99952 * 3 2 1 7 7 C 1.38806 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 157.98197 * 7 2 1 9 9 N 1.36941 * 119.99862 * 337.98637 * 7 2 1 10 10 C 1.50238 * 130.83797 * 342.39556 * 9 7 2 11 11 H 1.08991 * 115.86175 * 0.39214 * 10 9 7 12 12 C 1.55847 * 101.04723 * 234.00583 * 10 9 7 13 13 C 1.54218 * 103.56830 * 327.14938 * 12 10 9 14 14 C 1.50236 * 130.83651 * 162.74191 * 9 7 2 15 15 H 1.09003 * 115.86318 * 359.59448 * 14 9 7 16 16 C 1.55855 * 101.04905 * 233.92933 * 14 9 7 17 17 H 1.08998 * 110.62481 * 208.57755 * 16 14 9 18 18 N 1.46493 * 110.62598 * 85.70594 * 16 14 9 19 19 C 1.34779 * 119.99622 * 155.00284 * 18 16 14 20 20 O 1.21637 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.47195 * 119.99924 * 180.02562 * 19 18 16 22 22 C 1.44423 * 123.45876 * 180.02562 * 21 19 18 23 23 C 1.32772 * 113.08120 * 179.97438 * 22 21 19 24 24 S 1.75497 * 110.57590 * 0.02562 * 23 22 21 25 25 C 1.36007 * 123.46208 * 359.70247 * 21 19 18 26 26 C 1.54855 * 103.44066 * 327.05779 * 16 14 9 27 27 H 0.97000 * 119.99592 * 173.97059 * 1 2 3 28 28 H 1.09004 * 110.62907 * 85.55612 * 12 10 9 29 29 H 1.09006 * 110.62362 * 208.41201 * 12 10 9 30 30 H 1.09002 * 110.64963 * 241.43899 * 13 12 10 31 31 H 1.08996 * 110.49962 * 118.49541 * 13 12 10 32 32 H 0.96995 * 120.00611 * 335.00476 * 18 16 14 33 33 H 1.07998 * 123.46064 * 0.02562 * 22 21 19 34 34 H 1.07995 * 124.70947 * 179.97438 * 23 22 21 35 35 H 1.08004 * 124.59093 * 359.97438 * 25 21 19 36 36 H 1.08999 * 110.62274 * 118.48658 * 26 16 14 37 37 H 1.08997 * 110.63159 * 241.50735 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0312 -1.2364 -0.3501 9 7 1.4005 -2.3446 0.4456 10 6 0.1705 -2.5381 1.2863 11 1 -0.3392 -1.6272 1.5999 12 6 0.7282 -3.4403 2.4282 13 6 1.8060 -4.2897 1.7245 14 6 1.7593 -3.7902 0.2491 15 1 2.6488 -3.9820 -0.3511 16 6 0.4253 -4.3534 -0.3272 17 1 0.3110 -5.4068 -0.0715 18 7 0.3712 -4.1675 -1.7793 19 6 -0.3931 -4.9810 -2.5348 20 8 -1.0381 -5.8692 -2.0108 21 6 -0.4470 -4.7947 -3.9939 22 6 -1.2400 -5.6213 -4.8734 23 6 -1.1367 -5.2715 -6.1500 24 16 -0.0530 -3.9027 -6.3287 25 6 0.2398 -3.8223 -4.6516 26 6 -0.6592 -3.5006 0.3762 27 1 -0.4849 -0.8354 -0.0882 28 1 1.1750 -2.8320 3.2147 29 1 -0.0591 -4.0746 2.8356 30 1 1.5566 -5.3494 1.7792 31 1 2.7863 -4.1018 2.1626 32 1 0.8853 -3.4591 -2.1971 33 1 -1.8546 -6.4395 -4.5281 34 1 -1.6479 -5.7618 -6.9653 35 1 0.8849 -3.0985 -4.1758 36 1 -1.2384 -2.9369 -0.3551 37 1 -1.3113 -4.1311 0.9806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096773377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:37 Heat of formation + Delta-G solvation = 38.217309 kcal Electronic energy + Delta-G solvation = -21435.931398 eV Core-core repulsion = 18305.926530 eV Total energy + Delta-G solvation = -3130.004868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00766 -38.76383 -36.60224 -33.89738 -32.80059 -30.15727 -29.09706 -28.83275 -27.67331 -24.87649 -23.97469 -22.07414 -20.62352 -19.92928 -19.09550 -18.71907 -17.88851 -17.63706 -16.84131 -15.68624 -14.85234 -14.63720 -14.30539 -13.87661 -13.76197 -13.66706 -13.02414 -12.98692 -12.76566 -12.49728 -12.34581 -11.78259 -11.58642 -11.37932 -11.15499 -10.81347 -10.68883 -10.64294 -10.43039 -10.12366 -9.88575 -9.77030 -9.43943 -9.33064 -9.09640 -8.74890 -8.56637 -8.35128 -7.06770 -6.16114 -3.22523 0.78909 1.50816 1.88142 2.06827 3.43173 3.48240 3.57162 3.65034 3.65582 4.46442 4.76517 4.92652 5.14446 5.25271 5.28584 5.38072 5.48813 5.53058 5.71450 5.78614 5.83130 5.96338 5.97252 6.05122 6.10094 6.20186 6.24770 6.32612 6.45523 6.53327 6.62548 6.77852 6.91208 7.07482 7.20563 7.50328 7.96747 8.31105 8.58604 8.88715 9.69800 10.39324 11.20350 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.005487 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.223119 B = 5101.460379 C = 6479.070025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.067 2.933 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.322 4.322 8 H 0.065 0.935 9 N -0.594 5.594 10 C 0.140 3.860 11 H 0.108 0.892 12 C -0.134 4.134 13 C -0.125 4.125 14 C 0.126 3.874 15 H 0.090 0.910 16 C 0.129 3.871 17 H 0.082 0.918 18 N -0.699 5.699 19 C 0.572 3.428 20 O -0.551 6.551 21 C -0.152 4.152 22 C -0.084 4.084 23 C -0.242 4.242 24 S 0.176 5.824 25 C -0.205 4.205 26 C -0.140 4.140 27 H 0.271 0.729 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -8.916 -8.562 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.228 4.228 3 Si 0.897 3.103 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.449 4.449 8 H 0.083 0.917 9 N -0.317 5.317 10 C 0.033 3.967 11 H 0.126 0.874 12 C -0.173 4.173 13 C -0.165 4.165 14 C 0.018 3.982 15 H 0.108 0.892 16 C 0.022 3.978 17 H 0.100 0.900 18 N -0.348 5.348 19 C 0.357 3.643 20 O -0.431 6.431 21 C -0.170 4.170 22 C -0.113 4.113 23 C -0.377 4.377 24 S 0.441 5.559 25 C -0.344 4.344 26 C -0.180 4.180 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.238 0.762 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.190 0.810 36 H 0.082 0.918 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.562 -6.841 -9.422 11.657 hybrid contribution -0.039 -2.074 0.961 2.286 sum 0.524 -8.915 -8.461 12.302 Atomic orbital electron populations 1.70771 1.06471 1.30613 1.48557 1.25726 0.96650 1.00797 0.99590 0.83483 0.74641 0.76105 0.76080 1.21060 1.22150 1.22142 1.19713 0.95803 0.86243 1.43169 0.91725 1.46550 1.29255 0.99311 1.56561 1.23137 0.88792 0.95230 0.89536 0.87379 1.22834 0.97730 0.98223 0.98507 1.22747 0.99086 0.97805 0.96832 1.23206 0.94067 0.86692 0.94217 0.89215 1.22597 0.98231 0.98790 0.78171 0.89953 1.45864 1.46923 1.33792 1.08182 1.17604 0.79566 0.81770 0.85349 1.90738 1.44369 1.33845 1.74104 1.20449 1.02688 0.98933 0.94894 1.21139 0.99001 1.00017 0.91174 1.25474 1.07539 1.03859 1.00796 1.82985 1.41452 1.28819 1.02662 1.25771 1.05274 1.03283 1.00032 1.23504 0.97127 0.98033 0.99383 0.91663 0.92491 0.92729 0.92586 0.92152 0.76229 0.83011 0.81499 0.81022 0.91779 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 12.67 55.49 0.70 -25.95 16 2 C -0.03 -0.71 5.34 -17.43 -0.09 -0.81 16 3 Si 1.07 24.46 29.97 -169.99 -5.10 19.37 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.32 -8.46 10.42 -15.06 -0.16 -8.61 16 8 H 0.06 1.69 7.92 -52.49 -0.42 1.27 16 9 N -0.59 -13.90 2.83 -145.54 -0.41 -14.31 16 10 C 0.14 3.08 3.84 -62.54 -0.24 2.84 16 11 H 0.11 2.69 6.54 -51.93 -0.34 2.35 16 12 C -0.13 -2.48 6.41 -24.57 -0.16 -2.64 16 13 C -0.12 -2.18 6.41 -24.58 -0.16 -2.34 16 14 C 0.13 2.45 5.06 -62.80 -0.32 2.14 16 15 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 16 C 0.13 2.44 2.80 -65.43 -0.18 2.26 16 17 H 0.08 1.56 7.22 -51.93 -0.38 1.18 16 18 N -0.70 -12.77 5.05 -52.54 -0.27 -13.04 16 19 C 0.57 10.49 7.79 -12.62 -0.10 10.39 16 20 O -0.55 -11.52 16.44 5.24 0.09 -11.44 16 21 C -0.15 -2.34 5.98 -104.63 -0.63 -2.96 16 22 C -0.08 -1.12 10.10 -39.02 -0.39 -1.51 16 23 C -0.24 -2.58 11.12 28.86 0.32 -2.26 16 24 S 0.18 1.86 23.02 -107.50 -2.47 -0.61 16 25 C -0.21 -2.75 10.38 29.93 0.31 -2.44 16 26 C -0.14 -2.85 6.11 -23.98 -0.15 -3.00 16 27 H 0.27 7.78 5.66 -40.82 -0.23 7.55 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.90 7.83 -51.93 -0.41 0.49 16 30 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 7.27 7.16 -40.82 -0.29 6.98 16 33 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.17 2.22 7.01 -52.48 -0.37 1.86 16 36 H 0.06 1.44 7.57 -51.93 -0.39 1.05 16 37 H 0.06 1.11 7.83 -51.93 -0.41 0.70 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -30.72 316.18 -9.18 -39.90 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.54 Total: 10.26 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.94 Total: -8.94 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.03 Total: -53.30 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.10 Total: 19.37 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.47 Total: -0.61 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.72 -9.18 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096773377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.118 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds