Wall clock time and date at job start Tue Mar 31 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48501 * 109.47198 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46714 * 239.99666 * 3 2 1 6 6 H 1.48494 * 109.47197 * 119.99952 * 3 2 1 7 7 C 1.38806 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 157.98197 * 7 2 1 9 9 N 1.36941 * 119.99862 * 337.98637 * 7 2 1 10 10 C 1.50238 * 130.83797 * 342.39556 * 9 7 2 11 11 H 1.08991 * 115.86175 * 0.39214 * 10 9 7 12 12 C 1.55847 * 101.04723 * 234.00583 * 10 9 7 13 13 C 1.54218 * 103.56830 * 327.14938 * 12 10 9 14 14 C 1.50236 * 130.83651 * 162.74191 * 9 7 2 15 15 H 1.09003 * 115.86318 * 359.59448 * 14 9 7 16 16 C 1.55855 * 101.04905 * 233.92933 * 14 9 7 17 17 H 1.08998 * 110.62481 * 208.57755 * 16 14 9 18 18 N 1.46493 * 110.62598 * 85.70594 * 16 14 9 19 19 C 1.34779 * 119.99622 * 155.00284 * 18 16 14 20 20 O 1.21637 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.47195 * 119.99924 * 180.02562 * 19 18 16 22 22 C 1.44423 * 123.45876 * 180.02562 * 21 19 18 23 23 C 1.32772 * 113.08120 * 179.97438 * 22 21 19 24 24 S 1.75497 * 110.57590 * 0.02562 * 23 22 21 25 25 C 1.36007 * 123.46208 * 359.70247 * 21 19 18 26 26 C 1.54855 * 103.44066 * 327.05779 * 16 14 9 27 27 H 0.97000 * 119.99592 * 173.97059 * 1 2 3 28 28 H 1.09004 * 110.62907 * 85.55612 * 12 10 9 29 29 H 1.09006 * 110.62362 * 208.41201 * 12 10 9 30 30 H 1.09002 * 110.64963 * 241.43899 * 13 12 10 31 31 H 1.08996 * 110.49962 * 118.49541 * 13 12 10 32 32 H 0.96995 * 120.00611 * 335.00476 * 18 16 14 33 33 H 1.07998 * 123.46064 * 0.02562 * 22 21 19 34 34 H 1.07995 * 124.70947 * 179.97438 * 23 22 21 35 35 H 1.08004 * 124.59093 * 359.97438 * 25 21 19 36 36 H 1.08999 * 110.62274 * 118.48658 * 26 16 14 37 37 H 1.08997 * 110.63159 * 241.50735 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0312 -1.2364 -0.3501 9 7 1.4005 -2.3446 0.4456 10 6 0.1705 -2.5381 1.2863 11 1 -0.3392 -1.6272 1.5999 12 6 0.7282 -3.4403 2.4282 13 6 1.8060 -4.2897 1.7245 14 6 1.7593 -3.7902 0.2491 15 1 2.6488 -3.9820 -0.3511 16 6 0.4253 -4.3534 -0.3272 17 1 0.3110 -5.4068 -0.0715 18 7 0.3712 -4.1675 -1.7793 19 6 -0.3931 -4.9810 -2.5348 20 8 -1.0381 -5.8692 -2.0108 21 6 -0.4470 -4.7947 -3.9939 22 6 -1.2400 -5.6213 -4.8734 23 6 -1.1367 -5.2715 -6.1500 24 16 -0.0530 -3.9027 -6.3287 25 6 0.2398 -3.8223 -4.6516 26 6 -0.6592 -3.5006 0.3762 27 1 -0.4849 -0.8354 -0.0882 28 1 1.1750 -2.8320 3.2147 29 1 -0.0591 -4.0746 2.8356 30 1 1.5566 -5.3494 1.7792 31 1 2.7863 -4.1018 2.1626 32 1 0.8853 -3.4591 -2.1971 33 1 -1.8546 -6.4395 -4.5281 34 1 -1.6479 -5.7618 -6.9653 35 1 0.8849 -3.0985 -4.1758 36 1 -1.2384 -2.9369 -0.3551 37 1 -1.3113 -4.1311 0.9806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096773377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:37 Heat of formation + Delta-G solvation = 19.627848 kcal Electronic energy + Delta-G solvation = -21436.737497 eV Core-core repulsion = 18305.926530 eV Total energy + Delta-G solvation = -3130.810968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52781 -40.22189 -37.74622 -35.47904 -34.67205 -31.32809 -30.89613 -30.36748 -29.18468 -26.16681 -25.78196 -23.39575 -21.99953 -21.63399 -20.60536 -20.03892 -19.50412 -18.99765 -18.06189 -17.15067 -16.57265 -15.97994 -15.81090 -15.56349 -15.35314 -15.17529 -14.48592 -14.02236 -13.99104 -13.86669 -13.46985 -13.39114 -13.31840 -12.92135 -12.59619 -12.42121 -12.21054 -12.11358 -11.97216 -11.94200 -11.58918 -11.37235 -11.23823 -10.83655 -10.62841 -10.15623 -9.99524 -9.38046 -8.99673 -8.25930 -5.27220 -0.26336 0.58484 0.93005 0.98179 1.58488 1.66117 1.83866 2.19469 2.31803 2.63160 3.18523 3.35439 3.75834 3.84445 3.91004 3.95811 4.10429 4.26470 4.29442 4.33533 4.39283 4.47493 4.53717 4.65447 4.77539 4.80847 4.86304 5.02228 5.05038 5.10346 5.24506 5.25754 5.34833 5.45024 5.58337 5.66173 6.29548 6.51234 6.84840 7.14689 7.69049 8.45912 9.12234 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.005487 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.223119 B = 5101.460379 C = 6479.070025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.080 4.080 3 Si 1.114 2.886 4 H -0.298 1.298 5 H -0.275 1.275 6 H -0.285 1.285 7 C -0.318 4.318 8 H 0.064 0.936 9 N -0.615 5.615 10 C 0.131 3.869 11 H 0.071 0.929 12 C -0.125 4.125 13 C -0.115 4.115 14 C 0.127 3.873 15 H 0.098 0.902 16 C 0.136 3.864 17 H 0.091 0.909 18 N -0.700 5.700 19 C 0.569 3.431 20 O -0.583 6.583 21 C -0.182 4.182 22 C -0.109 4.109 23 C -0.226 4.226 24 S 0.245 5.755 25 C -0.219 4.219 26 C -0.131 4.131 27 H 0.260 0.740 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.150 0.850 34 H 0.203 0.797 35 H 0.169 0.831 36 H 0.031 0.969 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -9.940 -9.905 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.275 4.275 3 Si 0.940 3.060 4 H -0.225 1.225 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.446 4.446 8 H 0.082 0.918 9 N -0.338 5.338 10 C 0.024 3.976 11 H 0.089 0.911 12 C -0.164 4.164 13 C -0.155 4.155 14 C 0.020 3.980 15 H 0.116 0.884 16 C 0.030 3.970 17 H 0.109 0.891 18 N -0.348 5.348 19 C 0.357 3.643 20 O -0.466 6.466 21 C -0.200 4.200 22 C -0.138 4.138 23 C -0.361 4.361 24 S 0.511 5.489 25 C -0.358 4.358 26 C -0.172 4.172 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.167 0.833 34 H 0.220 0.780 35 H 0.187 0.813 36 H 0.050 0.950 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.650 -7.899 -10.775 13.461 hybrid contribution -0.368 -1.779 1.273 2.218 sum 1.282 -9.678 -9.501 13.622 Atomic orbital electron populations 1.70858 1.07540 1.30029 1.51710 1.26908 0.96686 1.03907 0.99998 0.82836 0.73642 0.72429 0.77092 1.22452 1.20046 1.21160 1.19952 0.95708 0.87406 1.41563 0.91794 1.46722 1.29615 1.00332 1.57177 1.23088 0.88559 0.94743 0.91177 0.91114 1.22764 0.98655 0.97905 0.97053 1.22704 0.99003 0.99132 0.94611 1.23404 0.94346 0.84404 0.95880 0.88414 1.22500 0.97266 0.98651 0.78612 0.89132 1.45864 1.47102 1.33883 1.07980 1.18082 0.78586 0.80941 0.86734 1.90698 1.45643 1.35155 1.75077 1.20375 1.05162 1.01052 0.93430 1.21151 1.00004 1.00671 0.91972 1.25912 1.06342 1.03186 1.00670 1.82786 1.39604 1.27368 0.99188 1.25941 1.04827 1.02627 1.02400 1.23393 0.97283 0.97752 0.98722 0.92898 0.93075 0.90196 0.89591 0.91509 0.76278 0.83271 0.78001 0.81304 0.94962 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.31 12.67 21.65 0.27 -57.04 16 2 C -0.08 -4.38 5.34 84.86 0.45 -3.93 16 3 Si 1.11 49.92 29.97 68.60 2.06 51.98 16 4 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.32 -16.84 10.42 84.03 0.88 -15.97 16 8 H 0.06 3.33 7.92 -2.91 -0.02 3.30 16 9 N -0.62 -28.96 2.83 -614.38 -1.74 -30.69 16 10 C 0.13 5.87 3.84 46.39 0.18 6.04 16 11 H 0.07 3.70 6.54 -2.39 -0.02 3.68 16 12 C -0.12 -4.46 6.41 31.99 0.21 -4.26 16 13 C -0.12 -3.73 6.41 31.99 0.21 -3.52 16 14 C 0.13 4.78 5.06 46.23 0.23 5.01 16 15 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 16 C 0.14 5.13 2.80 46.61 0.13 5.26 16 17 H 0.09 3.30 7.22 -2.39 -0.02 3.29 16 18 N -0.70 -26.00 5.05 -438.36 -2.21 -28.21 16 19 C 0.57 21.26 7.79 86.60 0.67 21.94 16 20 O -0.58 -24.83 16.44 -4.15 -0.07 -24.90 16 21 C -0.18 -5.59 5.98 -19.87 -0.12 -5.71 16 22 C -0.11 -2.81 10.10 22.67 0.23 -2.58 16 23 C -0.23 -4.19 11.12 66.64 0.74 -3.45 16 24 S 0.24 4.51 23.02 -56.49 -1.30 3.21 16 25 C -0.22 -5.72 10.38 67.30 0.70 -5.02 16 26 C -0.13 -5.43 6.11 32.38 0.20 -5.23 16 27 H 0.26 15.68 5.66 -92.71 -0.53 15.15 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 2.45 7.83 -2.38 -0.02 2.43 16 30 H 0.09 2.32 7.82 -2.39 -0.02 2.30 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.40 14.88 7.16 -92.71 -0.66 14.21 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.20 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.17 4.38 7.01 -2.91 -0.02 4.36 16 36 H 0.03 1.51 7.57 -2.39 -0.02 1.50 16 37 H 0.07 2.81 7.83 -2.39 -0.02 2.79 16 Total: -1.00 -68.27 316.18 2.39 -65.88 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.68 Total: 31.18 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.70 Total: -11.40 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.68 Total: -115.94 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.07 Total: -24.90 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.06 Total: 51.98 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.30 Total: 3.21 kcal Total: -68.27 2.39 -65.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096773377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.505 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds