Wall clock time and date at job start Tue Mar 31 2020 07:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40055 * 125.87021 * 2 1 4 4 C 1.30221 * 109.72758 * 179.97438 * 3 2 1 5 5 C 1.41242 * 108.46612 * 0.02562 * 4 3 2 6 6 C 1.36326 * 125.86775 * 179.97438 * 2 1 3 7 7 N 1.33139 * 134.64136 * 359.97438 * 6 2 1 8 8 C 1.31495 * 120.63691 * 180.02562 * 7 6 2 9 9 C 1.50693 * 118.69131 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47065 * 90.00223 * 9 8 7 11 11 C 1.50708 * 109.47254 * 180.02562 * 10 9 8 12 12 O 1.21212 * 119.99579 * 359.97438 * 11 10 9 13 13 O 1.34311 * 119.99802 * 179.97438 * 11 10 9 14 14 C 1.34918 * 116.99426 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00406 * 0.02562 * 14 13 11 16 16 C 1.38755 * 119.99649 * 179.97438 * 14 13 11 17 17 N 1.31446 * 120.00034 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00118 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47356 * 90.00086 * 18 16 14 20 20 H 1.48503 * 109.47023 * 209.99822 * 18 16 14 21 21 H 1.48498 * 109.47081 * 329.99487 * 18 16 14 22 22 N 1.32163 * 122.61650 * 359.71543 * 8 7 6 23 23 C 1.32662 * 121.22698 * 0.57694 * 22 8 7 24 24 O 1.35368 * 120.79302 * 179.71333 * 23 22 8 25 25 H 1.09001 * 109.47315 * 89.97530 * 1 2 3 26 26 H 1.09009 * 109.47210 * 209.97564 * 1 2 3 27 27 H 1.08997 * 109.47241 * 329.97088 * 1 2 3 28 28 H 1.07994 * 125.77125 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47228 * 209.99889 * 9 8 7 30 30 H 1.09001 * 109.47130 * 330.00105 * 9 8 7 31 31 H 1.09005 * 109.47214 * 299.99866 * 10 9 8 32 32 H 1.09001 * 109.47745 * 59.99789 * 10 9 8 33 33 H 0.97002 * 120.00493 * 179.97438 * 17 16 14 34 34 H 0.96700 * 114.00230 * 269.72689 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2856 1.1349 0.0000 4 6 3.5365 0.7729 0.0005 5 6 3.5937 -0.6384 0.0003 6 6 2.2637 -1.1047 0.0005 7 7 2.0442 -2.4179 0.0015 8 6 3.0496 -3.2654 0.0022 9 6 2.7508 -4.7424 0.0028 10 6 2.6503 -5.2429 -1.4395 11 6 2.3508 -6.7199 -1.4390 12 8 2.2303 -7.3135 -0.3891 13 8 2.2175 -7.3785 -2.6020 14 6 1.9504 -8.6990 -2.5309 15 1 1.8528 -9.1792 -1.5684 16 6 1.7998 -9.4400 -3.6943 17 7 1.5400 -10.7267 -3.6251 18 14 1.9678 -8.6094 -5.3590 19 1 3.3845 -8.6674 -5.8005 20 1 1.1115 -9.3092 -6.3501 21 1 1.5410 -7.1912 -5.2499 22 7 4.3117 -2.8734 -0.0035 23 6 4.6321 -1.5860 0.0010 24 8 5.9279 -1.1943 0.0009 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8903 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 4.3865 1.4390 0.0003 29 1 3.5509 -5.2748 0.5171 30 1 1.8063 -4.9218 0.5163 31 1 1.8502 -4.7106 -1.9540 32 1 3.5948 -5.0635 -1.9532 33 1 1.4344 -11.2447 -4.4384 34 1 6.3043 -1.0798 0.8843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115832441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:33 Heat of formation + Delta-G solvation = 3.221126 kcal Electronic energy + Delta-G solvation = -22116.865658 eV Core-core repulsion = 18439.050027 eV Total energy + Delta-G solvation = -3677.815631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.44814 -39.72819 -39.14195 -38.03915 -35.57654 -34.05618 -33.31963 -32.72448 -32.26148 -30.04755 -27.46911 -26.60281 -24.84312 -23.98490 -22.30699 -21.42277 -19.67017 -19.01619 -18.81180 -17.93949 -17.56425 -16.73743 -16.64305 -15.90806 -15.28786 -15.08475 -15.04525 -14.64294 -14.20346 -13.74709 -13.58096 -13.34604 -13.06558 -13.00079 -12.47347 -12.38172 -12.05652 -11.79848 -11.59249 -11.29544 -11.24636 -10.94240 -10.83512 -10.44137 -10.33770 -9.67648 -9.61350 -9.47165 -9.16905 -9.03973 -8.64963 -6.33849 -4.09488 0.11252 0.87630 1.65923 1.97024 2.92993 3.16881 3.24986 3.33251 3.39094 3.44545 3.55413 3.70692 4.17691 4.25411 4.28654 4.44689 4.56540 4.87030 4.92502 4.95399 5.11845 5.15300 5.18454 5.36737 5.56624 5.75924 5.87457 6.03996 6.21239 6.27619 6.43244 6.71244 6.89037 7.04817 7.77070 7.85924 8.06863 8.64371 9.04751 9.71595 10.74709 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.003285 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.790214 B = 8522.423821 C = 8824.617740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.382 5.382 3 N -0.244 5.244 4 C 0.110 3.890 5 C -0.309 4.309 6 C 0.357 3.643 7 N -0.534 5.534 8 C 0.404 3.596 9 C -0.038 4.038 10 C -0.096 4.096 11 C 0.414 3.586 12 O -0.539 6.539 13 O -0.252 6.252 14 C -0.381 4.381 15 H 0.110 0.890 16 C 0.066 3.934 17 N -0.876 5.876 18 Si 0.904 3.096 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.260 1.260 22 N -0.554 5.554 23 C 0.454 3.546 24 O -0.470 6.470 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.203 0.797 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.279 0.721 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 25.250 7.677 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.171 5.171 3 N -0.058 5.058 4 C -0.088 4.088 5 C -0.323 4.323 6 C 0.110 3.890 7 N -0.257 5.257 8 C 0.134 3.866 9 C -0.077 4.077 10 C -0.135 4.135 11 C 0.260 3.740 12 O -0.434 6.434 13 O -0.161 6.161 14 C -0.457 4.457 15 H 0.128 0.872 16 C -0.138 4.138 17 N -0.515 5.515 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.184 1.184 22 N -0.282 5.282 23 C 0.256 3.744 24 O -0.278 6.278 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.220 0.780 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.198 25.023 7.225 26.138 hybrid contribution 0.855 0.495 -0.386 1.060 sum 3.053 25.518 6.839 26.594 Atomic orbital electron populations 1.21950 0.72466 1.04908 1.03911 1.48341 1.06694 0.99996 1.62099 1.76983 1.02049 1.07149 1.19584 1.23788 0.95234 0.92654 0.97112 1.20347 0.95263 0.96227 1.20500 1.19073 0.88118 0.88365 0.93467 1.67440 1.37179 0.99164 1.21890 1.23000 0.81283 0.96575 0.85747 1.20282 1.05713 0.83852 0.97868 1.20977 1.04611 0.91332 0.96631 1.22705 0.78935 0.89442 0.82939 1.90605 1.50436 1.69606 1.32795 1.83516 1.75051 1.24785 1.32719 1.20660 1.48927 0.78905 0.97187 0.87220 1.24542 0.95568 0.94761 0.98922 1.69609 1.46172 1.05766 1.29988 0.86232 0.78611 0.80321 0.81871 1.19842 1.20797 1.18449 1.67980 1.22529 1.16984 1.20676 1.18950 0.83945 0.86103 0.85398 1.84633 1.21230 1.87546 1.34393 0.90481 0.88628 0.89005 0.78038 0.87408 0.87619 0.88625 0.88430 0.91078 0.72613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.81 11.47 59.85 0.69 1.50 16 2 N -0.38 -4.22 4.05 -67.24 -0.27 -4.49 16 3 N -0.24 -2.54 12.44 30.81 0.38 -2.16 16 4 C 0.11 0.96 12.05 -17.09 -0.21 0.75 16 5 C -0.31 -3.45 6.19 -106.85 -0.66 -4.11 16 6 C 0.36 4.59 8.04 -156.24 -1.26 3.33 16 7 N -0.53 -7.53 10.35 -10.10 -0.10 -7.63 16 8 C 0.40 5.75 6.88 -157.14 -1.08 4.67 16 9 C -0.04 -0.57 4.92 -27.89 -0.14 -0.71 16 10 C -0.10 -1.63 5.79 -27.88 -0.16 -1.79 16 11 C 0.41 9.61 7.91 36.01 0.28 9.89 16 12 O -0.54 -13.91 15.22 -19.05 -0.29 -14.20 16 13 O -0.25 -6.71 8.58 -20.70 -0.18 -6.88 16 14 C -0.38 -11.42 10.10 30.92 0.31 -11.11 16 15 H 0.11 3.60 7.09 -52.49 -0.37 3.23 16 16 C 0.07 1.90 5.49 -17.53 -0.10 1.80 16 17 N -0.88 -26.17 13.96 55.48 0.77 -25.40 16 18 Si 0.90 21.69 28.62 -169.99 -4.86 16.83 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 22 N -0.55 -7.59 10.33 -10.53 -0.11 -7.70 16 23 C 0.45 5.13 7.90 -16.31 -0.13 5.00 16 24 O -0.47 -3.82 13.58 -17.80 -0.24 -4.06 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.20 0.90 8.06 -52.49 -0.42 0.47 16 29 H 0.11 1.62 8.10 -51.93 -0.42 1.20 16 30 H 0.11 1.59 8.10 -51.93 -0.42 1.17 16 31 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.41 1.04 9.06 45.56 0.41 1.45 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -37.07 314.61 -5.08 -42.15 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -2.47 Total: -0.42 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -2.45 Total: 9.23 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.67 Total: -47.38 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.71 Total: -25.15 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.07 -5.08 -42.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115832441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.367 kcal (2) G-P(sol) polarization free energy of solvation -37.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds