Wall clock time and date at job start Tue Mar 31 2020 07:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40055 * 125.87021 * 2 1 4 4 C 1.30221 * 109.72758 * 179.97438 * 3 2 1 5 5 C 1.41242 * 108.46612 * 0.02562 * 4 3 2 6 6 C 1.36326 * 125.86775 * 179.97438 * 2 1 3 7 7 N 1.33139 * 134.64136 * 359.97438 * 6 2 1 8 8 C 1.31495 * 120.63691 * 180.02562 * 7 6 2 9 9 C 1.50693 * 118.69131 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47065 * 90.00223 * 9 8 7 11 11 C 1.50708 * 109.47254 * 180.02562 * 10 9 8 12 12 O 1.21212 * 119.99579 * 359.97438 * 11 10 9 13 13 O 1.34311 * 119.99802 * 179.97438 * 11 10 9 14 14 C 1.34918 * 116.99426 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00406 * 0.02562 * 14 13 11 16 16 C 1.38755 * 119.99649 * 179.97438 * 14 13 11 17 17 N 1.31446 * 120.00034 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00118 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47356 * 90.00086 * 18 16 14 20 20 H 1.48503 * 109.47023 * 209.99822 * 18 16 14 21 21 H 1.48498 * 109.47081 * 329.99487 * 18 16 14 22 22 N 1.32163 * 122.61650 * 359.71543 * 8 7 6 23 23 C 1.32662 * 121.22698 * 0.57694 * 22 8 7 24 24 O 1.35368 * 120.79302 * 179.71333 * 23 22 8 25 25 H 1.09001 * 109.47315 * 89.97530 * 1 2 3 26 26 H 1.09009 * 109.47210 * 209.97564 * 1 2 3 27 27 H 1.08997 * 109.47241 * 329.97088 * 1 2 3 28 28 H 1.07994 * 125.77125 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47228 * 209.99889 * 9 8 7 30 30 H 1.09001 * 109.47130 * 330.00105 * 9 8 7 31 31 H 1.09005 * 109.47214 * 299.99866 * 10 9 8 32 32 H 1.09001 * 109.47745 * 59.99789 * 10 9 8 33 33 H 0.97002 * 120.00493 * 179.97438 * 17 16 14 34 34 H 0.96700 * 114.00230 * 269.72689 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2856 1.1349 0.0000 4 6 3.5365 0.7729 0.0005 5 6 3.5937 -0.6384 0.0003 6 6 2.2637 -1.1047 0.0005 7 7 2.0442 -2.4179 0.0015 8 6 3.0496 -3.2654 0.0022 9 6 2.7508 -4.7424 0.0028 10 6 2.6503 -5.2429 -1.4395 11 6 2.3508 -6.7199 -1.4390 12 8 2.2303 -7.3135 -0.3891 13 8 2.2175 -7.3785 -2.6020 14 6 1.9504 -8.6990 -2.5309 15 1 1.8528 -9.1792 -1.5684 16 6 1.7998 -9.4400 -3.6943 17 7 1.5400 -10.7267 -3.6251 18 14 1.9678 -8.6094 -5.3590 19 1 3.3845 -8.6674 -5.8005 20 1 1.1115 -9.3092 -6.3501 21 1 1.5410 -7.1912 -5.2499 22 7 4.3117 -2.8734 -0.0035 23 6 4.6321 -1.5860 0.0010 24 8 5.9279 -1.1943 0.0009 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8903 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 4.3865 1.4390 0.0003 29 1 3.5509 -5.2748 0.5171 30 1 1.8063 -4.9218 0.5163 31 1 1.8502 -4.7106 -1.9540 32 1 3.5948 -5.0635 -1.9532 33 1 1.4344 -11.2447 -4.4384 34 1 6.3043 -1.0798 0.8843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115832441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:32 Heat of formation + Delta-G solvation = -26.307973 kcal Electronic energy + Delta-G solvation = -22118.146136 eV Core-core repulsion = 18439.050027 eV Total energy + Delta-G solvation = -3679.096109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.28264 -41.21753 -40.46348 -38.82786 -37.54420 -34.80506 -34.65698 -34.44455 -33.59472 -31.07895 -28.34900 -28.07550 -26.48025 -24.87425 -23.42029 -22.21631 -21.44224 -20.13658 -19.83402 -19.64322 -18.66928 -18.29125 -17.47518 -17.07780 -16.92143 -16.61862 -15.94265 -15.82596 -15.27756 -15.01845 -14.91086 -14.79858 -14.35301 -13.99159 -13.67175 -13.62440 -13.26520 -13.14912 -12.98753 -12.54591 -12.40494 -12.25915 -12.21287 -12.08041 -11.85153 -11.72908 -11.14554 -10.82329 -10.54516 -10.30703 -9.87203 -8.53458 -6.40054 -0.74290 -0.02153 0.91647 1.24398 1.30008 1.34918 1.53382 1.58624 2.13132 2.19911 2.29620 2.54642 2.80637 2.92501 2.94449 3.41852 3.59439 3.79884 3.84186 4.07647 4.10559 4.33799 4.37369 4.39219 4.59183 4.62240 4.77252 4.84176 5.04414 5.16873 5.37564 5.51204 5.84575 5.90445 6.20477 6.51113 6.54491 6.83915 6.91947 7.59848 8.59520 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.003285 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.790214 B = 8522.423821 C = 8824.617740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.386 5.386 3 N -0.259 5.259 4 C 0.125 3.875 5 C -0.312 4.312 6 C 0.332 3.668 7 N -0.549 5.549 8 C 0.398 3.602 9 C -0.030 4.030 10 C -0.081 4.081 11 C 0.416 3.584 12 O -0.569 6.569 13 O -0.260 6.260 14 C -0.408 4.408 15 H 0.060 0.940 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.982 3.018 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.252 1.252 22 N -0.577 5.577 23 C 0.463 3.537 24 O -0.467 6.467 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.245 0.755 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.289 0.711 34 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.601 28.475 6.412 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.175 5.175 3 N -0.072 5.072 4 C -0.072 4.072 5 C -0.327 4.327 6 C 0.085 3.915 7 N -0.273 5.273 8 C 0.127 3.873 9 C -0.069 4.069 10 C -0.119 4.119 11 C 0.263 3.737 12 O -0.465 6.465 13 O -0.169 6.169 14 C -0.484 4.484 15 H 0.078 0.922 16 C -0.184 4.184 17 N -0.558 5.558 18 Si 0.802 3.198 19 H -0.184 1.184 20 H -0.190 1.190 21 H -0.175 1.175 22 N -0.305 5.305 23 C 0.266 3.734 24 O -0.279 6.279 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.261 0.739 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 3.207 28.283 6.010 29.091 hybrid contribution 0.591 -0.405 0.188 0.741 sum 3.798 27.877 6.198 28.809 Atomic orbital electron populations 1.22180 0.71087 1.05889 1.04717 1.48696 1.07696 0.99631 1.61465 1.76999 1.02742 1.07023 1.20446 1.24463 0.95798 0.92003 0.94914 1.20556 0.94532 0.97368 1.20197 1.19352 0.89558 0.88330 0.94303 1.67335 1.37364 1.00051 1.22543 1.22544 0.81823 0.95840 0.87066 1.20089 1.05352 0.85074 0.96387 1.21038 1.06106 0.86201 0.98575 1.24063 0.76355 0.91559 0.81680 1.90592 1.51134 1.70947 1.33784 1.83528 1.76162 1.23091 1.34157 1.20350 1.51465 0.80675 0.95924 0.92179 1.25559 0.94253 0.95313 1.03289 1.69706 1.46666 1.07472 1.31926 0.85095 0.79491 0.79407 0.75841 1.18416 1.18995 1.17516 1.67948 1.22157 1.18418 1.22014 1.18991 0.85031 0.85398 0.83948 1.84597 1.19626 1.87098 1.36534 0.89737 0.88738 0.86992 0.73875 0.87875 0.88208 0.86671 0.86429 0.90104 0.69681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 11.47 127.77 1.47 2.84 16 2 N -0.39 -7.87 4.05 -366.64 -1.48 -9.35 16 3 N -0.26 -4.72 12.44 -56.43 -0.70 -5.43 16 4 C 0.12 1.77 12.05 85.67 1.03 2.80 16 5 C -0.31 -6.22 6.19 -21.31 -0.13 -6.35 16 6 C 0.33 8.06 8.04 134.18 1.08 9.14 16 7 N -0.55 -15.03 10.35 -185.88 -1.92 -16.96 16 8 C 0.40 11.00 6.88 138.73 0.95 11.95 16 9 C -0.03 -0.89 4.92 29.85 0.15 -0.74 16 10 C -0.08 -2.65 5.79 29.85 0.17 -2.48 16 11 C 0.42 19.59 7.91 71.24 0.56 20.16 16 12 O -0.57 -30.48 15.22 20.77 0.32 -30.17 16 13 O -0.26 -13.99 8.58 14.89 0.13 -13.86 16 14 C -0.41 -25.37 10.10 67.94 0.69 -24.69 16 15 H 0.06 4.22 7.09 -2.91 -0.02 4.20 16 16 C 0.02 0.92 5.49 84.87 0.47 1.39 16 17 N -0.92 -56.02 13.96 21.63 0.30 -55.72 16 18 Si 0.98 44.16 28.62 68.60 1.96 46.12 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 21 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 22 N -0.58 -14.95 10.33 -300.05 -3.10 -18.05 16 23 C 0.46 9.40 7.90 85.14 0.67 10.07 16 24 O -0.47 -6.11 13.58 -86.59 -1.18 -7.28 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.25 1.01 8.06 -2.91 -0.02 0.99 16 29 H 0.10 3.13 8.10 -2.39 -0.02 3.11 16 30 H 0.10 3.05 8.10 -2.39 -0.02 3.03 16 31 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 32 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.29 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.44 0.71 9.06 -74.06 -0.67 0.04 16 Total: -1.00 -82.87 314.61 1.93 -80.93 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.50 Total: 5.68 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 7.11 Total: 24.08 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -6.91 Total: -105.51 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.73 Total: -51.31 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.96 Total: 46.12 kcal Total: -82.87 1.93 -80.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115832441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.625 kcal (2) G-P(sol) polarization free energy of solvation -82.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds