Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47387 * 300.00213 * 3 2 1 6 6 H 1.48507 * 109.46832 * 60.00076 * 3 2 1 7 7 C 1.37880 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46874 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47256 * 180.02562 * 10 9 7 12 12 N 1.30276 * 126.28250 * 90.02168 * 11 10 9 13 13 N 1.28674 * 109.37873 * 179.97438 * 12 11 10 14 14 C 1.30272 * 109.38187 * 0.02562 * 13 12 11 15 15 C 1.50701 * 126.28028 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.47130 * 90.02213 * 15 14 13 17 17 C 1.35960 * 116.99784 * 179.97438 * 16 15 14 18 18 C 1.38652 * 120.06488 * 0.02562 * 17 16 15 19 19 C 1.38177 * 119.97175 * 179.97438 * 18 17 16 20 20 C 1.38267 * 120.09667 * 0.02562 * 19 18 17 21 21 C 1.38257 * 120.12073 * 359.97438 * 20 19 18 22 22 C 1.38328 * 120.03129 * 359.70180 * 21 20 19 23 23 F 1.35105 * 120.05040 * 180.27934 * 22 21 20 24 24 O 1.34364 * 107.43764 * 359.97438 * 14 13 12 25 25 H 0.97002 * 120.00058 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46891 * 60.00234 * 9 7 2 27 27 H 1.08991 * 109.47022 * 300.00166 * 9 7 2 28 28 H 1.09002 * 109.47602 * 60.00251 * 10 9 7 29 29 H 1.09002 * 109.47598 * 300.00442 * 10 9 7 30 30 H 1.08995 * 109.47102 * 210.02300 * 15 14 13 31 31 H 1.09003 * 109.47108 * 330.02056 * 15 14 13 32 32 H 1.08000 * 120.01495 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.95667 * 180.02562 * 19 18 17 34 34 H 1.07992 * 119.93699 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.98097 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4916 -4.9672 -0.0025 12 7 1.1061 -5.6343 -1.0529 13 7 0.4910 -6.7010 -0.6793 14 6 0.4629 -6.7504 0.6221 15 6 -0.1623 -7.8359 1.4600 16 8 0.8077 -8.8512 1.7250 17 6 0.4030 -9.9107 2.4749 18 6 -0.8999 -9.9717 2.9450 19 6 -1.3093 -11.0496 3.7065 20 6 -0.4212 -12.0676 4.0010 21 6 0.8790 -12.0107 3.5343 22 6 1.2924 -10.9373 2.7659 23 9 2.5612 -10.8841 2.3049 24 8 1.0944 -5.6565 1.0804 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8725 -3.6049 0.8877 29 1 2.8712 -3.6040 -0.8922 30 1 -0.5115 -7.4123 2.4016 31 1 -1.0051 -8.2700 0.9222 32 1 -1.5946 -9.1771 2.7161 33 1 -2.3243 -11.0971 4.0721 34 1 -0.7437 -12.9086 4.5967 35 1 1.5709 -12.8069 3.7660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118423579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = -47.537126 kcal Electronic energy + Delta-G solvation = -21516.914335 eV Core-core repulsion = 17816.977699 eV Total energy + Delta-G solvation = -3699.936636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.88302 -45.44504 -41.17548 -38.61574 -37.40269 -36.34858 -34.32877 -32.57841 -31.69739 -30.79633 -28.98422 -27.32325 -24.59936 -24.47731 -23.54003 -23.07487 -22.64837 -19.77667 -18.95424 -18.51127 -18.33766 -17.91859 -17.72124 -17.31815 -16.52538 -16.46533 -16.26540 -15.90132 -15.63443 -15.40114 -15.05470 -14.36227 -14.18522 -13.81555 -13.67241 -13.55114 -13.41911 -13.14511 -12.91506 -12.71282 -12.63022 -12.43875 -12.24164 -12.19828 -11.96703 -11.90700 -11.37348 -10.70692 -10.61520 -9.96563 -9.32214 -8.24458 -6.36855 -0.19587 0.11240 0.21773 0.87274 1.14202 1.43462 1.44452 1.57557 2.01902 2.40374 2.58921 2.70312 3.10909 3.19898 3.22731 3.55692 3.75032 3.77079 3.96465 4.15808 4.20370 4.25637 4.32571 4.35050 4.43379 4.48181 4.48494 4.82755 4.94628 5.07555 5.25388 5.36157 5.42250 5.45485 5.60507 5.72809 6.07968 6.10223 6.78255 7.04972 7.33498 8.88337 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034098 B = 0.002511 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.967803 B =11149.303299 C =11315.053853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.034 3.966 10 C -0.014 4.014 11 C 0.203 3.797 12 N -0.325 5.325 13 N -0.283 5.283 14 C 0.142 3.858 15 C 0.167 3.833 16 O -0.333 6.333 17 C 0.075 3.925 18 C -0.182 4.182 19 C -0.081 4.081 20 C -0.120 4.120 21 C -0.117 4.117 22 C 0.033 3.967 23 F -0.155 7.155 24 O -0.222 6.222 25 H 0.265 0.735 26 H -0.004 1.004 27 H -0.002 1.002 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -24.470 11.324 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.004 4.004 10 C -0.053 4.053 11 C -0.007 4.007 12 N -0.171 5.171 13 N -0.132 5.132 14 C -0.070 4.070 15 C 0.092 3.908 16 O -0.247 6.247 17 C 0.029 3.971 18 C -0.201 4.201 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.135 4.135 22 C 0.013 3.987 23 F -0.134 7.134 24 O -0.102 6.102 25 H 0.074 0.926 26 H 0.014 0.986 27 H 0.017 0.983 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.186 0.814 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.401 -24.662 9.988 26.825 hybrid contribution 0.594 1.470 0.696 1.731 sum -2.807 -23.193 10.685 25.689 Atomic orbital electron populations 1.70111 1.08046 1.28021 1.51203 1.26014 0.95739 1.03642 0.94409 0.85294 0.79281 0.78248 0.77595 1.17942 1.20715 1.20472 1.21570 0.94136 0.90930 1.51172 0.90477 1.18962 0.93911 0.91784 0.95730 1.20586 0.96810 0.81600 1.06255 1.28947 0.95758 0.97252 0.78733 1.74423 1.14195 1.02187 1.26310 1.74234 1.15357 1.13335 1.10259 1.27807 0.98180 0.89663 0.91379 1.21087 0.88538 0.81770 0.99410 1.86086 1.40040 1.30403 1.68154 1.19260 0.94827 0.87443 0.95535 1.21574 0.93107 1.02935 1.02438 1.21529 1.01663 0.91729 0.94988 1.21440 0.91505 1.00530 1.00337 1.21363 0.99058 0.96377 0.96736 1.17599 0.79265 0.97514 1.04327 1.91457 1.37493 1.96666 1.87781 1.84812 1.56216 1.30514 1.38611 0.92618 0.98577 0.98332 0.87098 0.86459 0.85136 0.84042 0.81903 0.81380 0.81365 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -29.13 9.11 25.60 0.23 -28.90 16 8 H 0.08 3.84 7.74 -2.92 -0.02 3.82 16 9 C 0.03 1.75 4.96 29.85 0.15 1.90 16 10 C -0.01 -0.57 5.78 29.85 0.17 -0.39 16 11 C 0.20 8.24 7.73 88.34 0.68 8.93 16 12 N -0.32 -13.91 12.22 -165.50 -2.02 -15.93 16 13 N -0.28 -11.02 12.22 -165.50 -2.02 -13.04 16 14 C 0.14 4.68 8.11 88.34 0.72 5.39 16 15 C 0.17 3.55 5.36 71.24 0.38 3.93 16 16 O -0.33 -8.67 9.99 -93.10 -0.93 -9.60 16 17 C 0.07 1.56 6.69 22.53 0.15 1.71 16 18 C -0.18 -2.32 9.04 22.35 0.20 -2.12 16 19 C -0.08 -0.67 10.04 22.26 0.22 -0.45 16 20 C -0.12 -1.01 10.04 22.28 0.22 -0.79 16 21 C -0.12 -1.60 10.02 22.30 0.22 -1.38 16 22 C 0.03 0.71 7.31 22.45 0.16 0.87 16 23 F -0.16 -4.28 17.11 44.97 0.77 -3.52 16 24 O -0.22 -8.27 10.87 -3.71 -0.04 -8.31 16 25 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 29 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 30 H 0.13 1.90 7.66 -2.39 -0.02 1.88 16 31 H 0.14 2.12 7.66 -2.39 -0.02 2.10 16 32 H 0.16 1.22 6.30 -2.91 -0.02 1.20 16 33 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 34 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 35 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -74.80 320.63 3.17 -71.62 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: 1.12 Total: 0.31 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 3.98 Total: -10.82 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -3.76 Total: -84.47 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.97 Total: -17.91 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.77 Total: -3.52 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.80 3.17 -71.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118423579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.084 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds