Wall clock time and date at job start Tue Mar 31 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00304 * 2 1 4 4 H 1.48493 * 109.47372 * 239.99549 * 3 2 1 5 5 H 1.48499 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47119 * 119.99652 * 3 2 1 7 7 C 1.37878 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00116 * 0.02562 * 7 2 1 10 10 N 1.46510 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.34770 * 119.99980 * 89.99522 * 10 9 7 12 12 O 1.21290 * 119.99731 * 174.91324 * 11 10 9 13 13 C 1.50699 * 120.00051 * 354.91131 * 11 10 9 14 14 H 1.08997 * 113.34417 * 307.08552 * 13 11 10 15 15 C 1.53210 * 114.12390 * 80.00271 * 13 11 10 16 16 C 1.50927 * 89.02038 * 113.72251 * 15 13 11 17 17 O 1.21288 * 135.56929 * 180.02562 * 16 15 13 18 18 N 1.35077 * 88.86870 * 0.02562 * 16 15 13 19 19 C 1.40030 * 119.99776 * 269.99801 * 10 9 7 20 20 C 1.38848 * 120.04150 * 112.57860 * 19 10 9 21 21 C 1.38124 * 119.94821 * 179.76739 * 20 19 10 22 22 C 1.38465 * 120.04554 * 0.50839 * 21 20 19 23 23 F 1.35106 * 119.95517 * 179.72121 * 22 21 20 24 24 C 1.38476 * 120.09139 * 359.74628 * 22 21 20 25 25 C 1.38106 * 120.04444 * 359.97438 * 24 22 21 26 26 H 0.97001 * 119.99898 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47843 * 59.99191 * 9 7 2 28 28 H 1.09003 * 109.46874 * 299.98835 * 9 7 2 29 29 H 1.09003 * 113.27097 * 358.71548 * 15 13 11 30 30 H 1.09001 * 113.27355 * 228.73834 * 15 13 11 31 31 H 0.97001 * 130.89201 * 179.97438 * 18 16 15 32 32 H 1.07993 * 120.02986 * 0.02562 * 20 19 10 33 33 H 1.08003 * 119.97247 * 180.27984 * 21 20 19 34 34 H 1.08001 * 119.97550 * 180.02562 * 24 22 21 35 35 H 1.08004 * 120.02163 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6407 -4.1249 1.1677 12 8 3.3557 -5.1047 1.1697 13 6 2.2421 -3.4803 2.4702 14 1 2.4536 -2.4116 2.5057 15 6 0.8370 -3.8568 2.9510 16 6 1.4588 -4.5734 4.1248 17 8 1.0427 -5.2005 5.0760 18 7 2.6770 -4.2173 3.6625 19 6 2.6577 -4.1450 -1.2122 20 6 3.9868 -3.9919 -1.5835 21 6 4.4345 -4.5218 -2.7779 22 6 3.5566 -5.1961 -3.6096 23 9 3.9952 -5.7088 -4.7801 24 6 2.2294 -5.3453 -3.2435 25 6 1.7790 -4.8220 -2.0474 26 1 -0.4850 0.8401 -0.0004 27 1 0.6244 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 0.3125 -4.5245 2.2675 30 1 0.2359 -2.9951 3.2416 31 1 3.5649 -4.3941 4.0109 32 1 4.6710 -3.4625 -0.9370 33 1 5.4694 -4.4068 -3.0650 34 1 1.5463 -5.8720 -3.8934 35 1 0.7438 -4.9382 -1.7624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118651473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:22 Heat of formation + Delta-G solvation = -53.734113 kcal Electronic energy + Delta-G solvation = -22999.694200 eV Core-core repulsion = 19299.488843 eV Total energy + Delta-G solvation = -3700.205357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.71404 -41.04109 -39.55253 -37.87517 -36.18843 -35.24725 -32.81214 -30.97243 -29.82538 -28.29063 -27.30220 -25.73700 -23.44525 -22.66056 -22.28115 -19.81979 -19.16348 -17.57218 -17.26608 -17.13104 -16.99363 -16.28763 -15.99947 -15.88768 -15.41079 -15.07122 -14.50224 -14.25199 -14.16096 -13.41776 -13.36412 -13.12986 -12.72137 -12.60475 -12.42147 -12.11358 -11.95791 -11.70895 -11.61143 -11.23123 -10.94171 -10.93325 -10.41888 -10.06954 -9.94788 -9.83208 -8.98426 -8.90781 -8.74284 -8.71468 -7.87848 -6.37478 -4.46630 1.31078 1.44660 2.60125 2.75267 3.12930 3.16925 3.19926 3.22169 3.67653 3.79774 4.18014 4.23472 4.44546 4.73718 4.87774 4.95447 4.97401 5.02212 5.39385 5.44157 5.58203 5.72789 5.78524 5.97761 6.06415 6.28676 6.34890 6.40667 6.50841 6.63417 6.87491 6.94337 6.97698 7.32702 7.55146 7.78730 7.85697 8.40420 8.50305 8.63801 9.22424 10.69184 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.006931 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.320953 B = 4039.093652 C = 6198.407754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.071 3.929 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.233 3.767 10 N -0.554 5.554 11 C 0.520 3.480 12 O -0.544 6.544 13 C 0.128 3.872 14 H 0.147 0.853 15 C -0.168 4.168 16 C 0.541 3.459 17 O -0.510 6.510 18 N -0.721 5.721 19 C 0.165 3.835 20 C -0.078 4.078 21 C -0.144 4.144 22 C 0.082 3.918 23 F -0.146 7.146 24 C -0.144 4.144 25 C -0.094 4.094 26 H 0.269 0.731 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.393 0.607 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -4.788 -2.151 6.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.115 3.885 10 N -0.281 5.281 11 C 0.307 3.693 12 O -0.422 6.422 13 C 0.020 3.980 14 H 0.164 0.836 15 C -0.209 4.209 16 C 0.327 3.673 17 O -0.385 6.385 18 N -0.379 5.379 19 C 0.073 3.927 20 C -0.098 4.098 21 C -0.163 4.163 22 C 0.063 3.937 23 F -0.125 7.125 24 C -0.163 4.163 25 C -0.114 4.114 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.232 0.768 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.029 -5.510 -1.637 6.497 hybrid contribution 1.008 1.077 -0.309 1.507 sum 4.037 -4.432 -1.946 6.303 Atomic orbital electron populations 1.69885 1.05982 1.27836 1.48583 1.24903 0.94865 0.99289 0.94324 0.86563 0.79628 0.82454 0.78950 1.20040 1.21010 1.19962 1.21358 0.93644 0.90117 1.53507 0.91884 1.19740 0.87166 0.81917 0.99662 1.45913 1.45503 1.34708 1.02019 1.20379 0.80289 0.83407 0.85187 1.90693 1.38043 1.25929 1.87500 1.22062 0.93454 0.98589 0.83877 0.83617 1.23813 0.97461 1.02790 0.96790 1.21406 0.83256 0.77752 0.84934 1.90762 1.74199 1.42047 1.31454 1.48467 1.08813 1.55503 1.25078 1.17570 0.92466 0.95135 0.87521 1.21091 0.95545 0.97797 0.95370 1.20935 0.99966 1.00469 0.94961 1.17641 0.93288 0.99617 0.83201 1.91463 1.90138 1.85267 1.45603 1.20902 0.94162 1.03165 0.98082 1.21069 1.00386 0.96204 0.93721 0.92145 0.93832 0.93307 0.87165 0.85635 0.76755 0.85117 0.84848 0.84735 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.88 13.29 55.43 0.74 -21.15 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 18.74 29.54 -169.99 -5.02 13.72 16 4 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.55 -12.37 9.05 -34.44 -0.31 -12.68 16 8 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.23 4.69 4.85 -5.19 -0.03 4.66 16 10 N -0.55 -10.09 2.51 -114.72 -0.29 -10.38 16 11 C 0.52 9.29 7.05 -10.99 -0.08 9.22 16 12 O -0.54 -10.94 16.46 5.55 0.09 -10.85 16 13 C 0.13 1.96 3.94 -68.83 -0.27 1.69 16 14 H 0.15 2.20 7.77 -51.93 -0.40 1.80 16 15 C -0.17 -2.36 6.32 -28.82 -0.18 -2.54 16 16 C 0.54 8.61 10.03 -10.74 -0.11 8.50 16 17 O -0.51 -9.65 18.03 5.55 0.10 -9.55 16 18 N -0.72 -10.55 6.65 -85.33 -0.57 -11.12 16 19 C 0.16 2.90 4.77 -83.66 -0.40 2.50 16 20 C -0.08 -1.30 9.53 -39.40 -0.38 -1.68 16 21 C -0.14 -2.12 10.02 -39.54 -0.40 -2.51 16 22 C 0.08 1.21 7.30 -39.41 -0.29 0.92 16 23 F -0.15 -2.11 17.27 2.25 0.04 -2.07 16 24 C -0.14 -2.03 10.02 -39.54 -0.40 -2.43 16 25 C -0.09 -1.47 9.66 -39.40 -0.38 -1.85 16 26 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 27 H 0.04 0.95 7.84 -51.93 -0.41 0.54 16 28 H 0.05 0.95 5.86 -51.93 -0.30 0.65 16 29 H 0.11 1.49 7.99 -51.93 -0.41 1.08 16 30 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.39 5.19 8.96 -40.82 -0.37 4.83 16 32 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -27.84 317.98 -6.98 -34.82 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.55 Total: 6.40 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -3.31 Total: 5.38 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.12 Total: -42.64 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.19 Total: -20.40 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.84 -6.98 -34.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118651473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.914 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds