Wall clock time and date at job start Tue Mar 31 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00304 * 2 1 4 4 H 1.48493 * 109.47372 * 239.99549 * 3 2 1 5 5 H 1.48499 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47119 * 119.99652 * 3 2 1 7 7 C 1.37878 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00116 * 0.02562 * 7 2 1 10 10 N 1.46510 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.34770 * 119.99980 * 89.99522 * 10 9 7 12 12 O 1.21290 * 119.99731 * 174.91324 * 11 10 9 13 13 C 1.50699 * 120.00051 * 354.91131 * 11 10 9 14 14 H 1.08997 * 113.34417 * 307.08552 * 13 11 10 15 15 C 1.53210 * 114.12390 * 80.00271 * 13 11 10 16 16 C 1.50927 * 89.02038 * 113.72251 * 15 13 11 17 17 O 1.21288 * 135.56929 * 180.02562 * 16 15 13 18 18 N 1.35077 * 88.86870 * 0.02562 * 16 15 13 19 19 C 1.40030 * 119.99776 * 269.99801 * 10 9 7 20 20 C 1.38848 * 120.04150 * 112.57860 * 19 10 9 21 21 C 1.38124 * 119.94821 * 179.76739 * 20 19 10 22 22 C 1.38465 * 120.04554 * 0.50839 * 21 20 19 23 23 F 1.35106 * 119.95517 * 179.72121 * 22 21 20 24 24 C 1.38476 * 120.09139 * 359.74628 * 22 21 20 25 25 C 1.38106 * 120.04444 * 359.97438 * 24 22 21 26 26 H 0.97001 * 119.99898 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47843 * 59.99191 * 9 7 2 28 28 H 1.09003 * 109.46874 * 299.98835 * 9 7 2 29 29 H 1.09003 * 113.27097 * 358.71548 * 15 13 11 30 30 H 1.09001 * 113.27355 * 228.73834 * 15 13 11 31 31 H 0.97001 * 130.89201 * 179.97438 * 18 16 15 32 32 H 1.07993 * 120.02986 * 0.02562 * 20 19 10 33 33 H 1.08003 * 119.97247 * 180.27984 * 21 20 19 34 34 H 1.08001 * 119.97550 * 180.02562 * 24 22 21 35 35 H 1.08004 * 120.02163 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6407 -4.1249 1.1677 12 8 3.3557 -5.1047 1.1697 13 6 2.2421 -3.4803 2.4702 14 1 2.4536 -2.4116 2.5057 15 6 0.8370 -3.8568 2.9510 16 6 1.4588 -4.5734 4.1248 17 8 1.0427 -5.2005 5.0760 18 7 2.6770 -4.2173 3.6625 19 6 2.6577 -4.1450 -1.2122 20 6 3.9868 -3.9919 -1.5835 21 6 4.4345 -4.5218 -2.7779 22 6 3.5566 -5.1961 -3.6096 23 9 3.9952 -5.7088 -4.7801 24 6 2.2294 -5.3453 -3.2435 25 6 1.7790 -4.8220 -2.0474 26 1 -0.4850 0.8401 -0.0004 27 1 0.6244 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 0.3125 -4.5245 2.2675 30 1 0.2359 -2.9951 3.2416 31 1 3.5649 -4.3941 4.0109 32 1 4.6710 -3.4625 -0.9370 33 1 5.4694 -4.4068 -3.0650 34 1 1.5463 -5.8720 -3.8934 35 1 0.7438 -4.9382 -1.7624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118651473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:22 Heat of formation + Delta-G solvation = -70.941377 kcal Electronic energy + Delta-G solvation = -23000.440363 eV Core-core repulsion = 19299.488843 eV Total energy + Delta-G solvation = -3700.951520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.87027 -42.35492 -40.84986 -39.19082 -37.53279 -36.74103 -34.53468 -32.15553 -31.13310 -29.57812 -28.86865 -27.03755 -25.01848 -23.94597 -23.54745 -21.11703 -20.40655 -18.81037 -18.73864 -18.47464 -18.43473 -17.76710 -17.28186 -17.15576 -16.61181 -16.52207 -16.05277 -15.58626 -15.44087 -14.75713 -14.53154 -14.42796 -14.19759 -14.01891 -13.78007 -13.48292 -13.23277 -13.16258 -12.91205 -12.80319 -12.57111 -12.17358 -12.09492 -11.72152 -11.35079 -11.15426 -10.55950 -10.28314 -10.10778 -10.09003 -9.24412 -8.16448 -6.29189 0.07568 0.26201 1.31632 1.37984 1.47356 1.52036 1.56180 1.85453 2.35246 2.47319 2.58393 3.00644 3.16837 3.26860 3.46238 3.60492 3.79758 3.91678 4.20515 4.25506 4.41061 4.46155 4.67113 4.79637 4.91371 5.00542 5.10514 5.14237 5.15344 5.23589 5.43296 5.62593 5.74464 5.75852 5.99468 6.06644 6.37625 6.79528 7.09423 7.22525 7.42448 8.88712 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.006931 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.320953 B = 4039.093652 C = 6198.407754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.033 3.967 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.550 5.550 11 C 0.520 3.480 12 O -0.569 6.569 13 C 0.130 3.870 14 H 0.153 0.847 15 C -0.158 4.158 16 C 0.541 3.459 17 O -0.543 6.543 18 N -0.713 5.713 19 C 0.131 3.869 20 C -0.094 4.094 21 C -0.141 4.141 22 C 0.078 3.922 23 F -0.142 7.142 24 C -0.136 4.136 25 C -0.101 4.101 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.400 0.600 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -4.741 -2.776 6.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.277 5.277 11 C 0.308 3.692 12 O -0.448 6.448 13 C 0.022 3.978 14 H 0.170 0.830 15 C -0.198 4.198 16 C 0.327 3.673 17 O -0.419 6.419 18 N -0.370 5.370 19 C 0.040 3.960 20 C -0.114 4.114 21 C -0.160 4.160 22 C 0.059 3.941 23 F -0.121 7.121 24 C -0.155 4.155 25 C -0.121 4.121 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.240 0.760 32 H 0.144 0.856 33 H 0.174 0.826 34 H 0.181 0.819 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.286 -5.459 -2.278 6.766 hybrid contribution 0.999 1.010 -0.206 1.436 sum 4.285 -4.449 -2.484 6.658 Atomic orbital electron populations 1.69955 1.06880 1.28223 1.49932 1.25440 0.95380 1.01572 0.94450 0.85813 0.78552 0.79764 0.78783 1.20561 1.21256 1.19247 1.21570 0.93500 0.91157 1.52350 0.92453 1.19472 0.87057 0.81660 0.99170 1.45798 1.45122 1.34179 1.02639 1.20726 0.79711 0.83008 0.85738 1.90675 1.39217 1.27095 1.87840 1.22025 0.94440 0.98510 0.82824 0.83023 1.23824 0.96962 1.03284 0.95706 1.21612 0.83700 0.77243 0.84761 1.90744 1.74814 1.43508 1.32880 1.48418 1.09092 1.54908 1.24566 1.17942 0.93446 0.96679 0.87903 1.21152 0.95317 0.98676 0.96247 1.21151 1.01197 0.99562 0.94114 1.17769 0.93621 0.99438 0.83255 1.91476 1.90128 1.85160 1.45339 1.21197 0.94444 1.02207 0.97680 1.21249 1.00738 0.96109 0.93987 0.92293 0.95424 0.92431 0.86436 0.83760 0.75979 0.85587 0.82577 0.81857 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.41 13.29 21.45 0.28 -44.12 16 2 C 0.03 1.54 5.46 84.66 0.46 2.00 16 3 Si 0.94 37.70 29.54 68.60 2.03 39.73 16 4 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.55 -24.28 9.05 25.60 0.23 -24.04 16 8 H 0.06 2.58 7.81 -2.91 -0.02 2.55 16 9 C 0.25 9.69 4.85 85.63 0.42 10.10 16 10 N -0.55 -19.73 2.51 -635.24 -1.59 -21.32 16 11 C 0.52 18.20 7.05 87.66 0.62 18.82 16 12 O -0.57 -22.63 16.46 -3.06 -0.05 -22.68 16 13 C 0.13 3.82 3.94 44.26 0.17 4.00 16 14 H 0.15 4.36 7.77 -2.39 -0.02 4.34 16 15 C -0.16 -4.18 6.32 30.39 0.19 -3.99 16 16 C 0.54 16.66 10.03 87.68 0.88 17.54 16 17 O -0.54 -20.25 18.03 -3.06 -0.06 -20.31 16 18 N -0.71 -20.11 6.65 -542.08 -3.61 -23.72 16 19 C 0.13 4.55 4.77 38.12 0.18 4.73 16 20 C -0.09 -3.08 9.53 22.39 0.21 -2.86 16 21 C -0.14 -3.94 10.02 22.30 0.22 -3.72 16 22 C 0.08 2.15 7.30 22.38 0.16 2.32 16 23 F -0.14 -3.77 17.27 44.97 0.78 -3.00 16 24 C -0.14 -3.56 10.02 22.30 0.22 -3.33 16 25 C -0.10 -3.04 9.66 22.38 0.22 -2.82 16 26 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 27 H 0.03 1.19 7.84 -2.39 -0.02 1.17 16 28 H 0.06 2.18 5.86 -2.39 -0.01 2.16 16 29 H 0.12 2.99 7.99 -2.39 -0.02 2.97 16 30 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.40 10.20 8.96 -92.71 -0.83 9.37 16 32 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -57.52 317.98 2.29 -55.23 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.31 Total: 21.43 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 4.20 Total: 18.75 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -4.92 Total: -89.16 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.11 Total: -42.98 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -57.52 2.29 -55.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118651473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.708 kcal (2) G-P(sol) polarization free energy of solvation -57.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds