Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99908 * 2 1 4 4 H 1.48503 * 109.46930 * 269.99738 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99466 * 3 2 1 6 6 H 1.48502 * 109.47221 * 149.99608 * 3 2 1 7 7 C 1.37878 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99704 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99948 * 269.99814 * 10 9 7 12 12 O 1.21288 * 119.99927 * 185.07630 * 11 10 9 13 13 C 1.50695 * 120.00026 * 5.08077 * 11 10 9 14 14 H 1.08999 * 112.92029 * 49.66782 * 13 11 10 15 15 C 1.53725 * 113.70827 * 278.18155 * 13 11 10 16 16 C 1.51521 * 86.60734 * 245.60104 * 15 13 11 17 17 O 1.21276 * 134.17815 * 179.97438 * 16 15 13 18 18 N 1.36121 * 91.65545 * 359.94486 * 16 15 13 19 19 C 1.40036 * 120.00324 * 89.99799 * 10 9 7 20 20 C 1.38854 * 120.04086 * 67.00037 * 19 10 9 21 21 C 1.38115 * 119.95210 * 179.74301 * 20 19 10 22 22 C 1.38470 * 120.04432 * 0.51360 * 21 20 19 23 23 F 1.35105 * 119.95383 * 179.74170 * 22 21 20 24 24 C 1.38478 * 120.08956 * 359.77080 * 22 21 20 25 25 C 1.38103 * 120.04846 * 359.96829 * 24 22 21 26 26 H 0.97006 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47305 * 59.99760 * 9 7 2 28 28 H 1.08995 * 109.47132 * 299.99760 * 9 7 2 29 29 H 1.08998 * 113.68906 * 0.02562 * 15 13 11 30 30 H 1.08998 * 113.69198 * 131.17305 * 15 13 11 31 31 H 0.96997 * 132.49702 * 180.08612 * 18 16 15 32 32 H 1.07999 * 120.02402 * 0.02562 * 20 19 10 33 33 H 1.08004 * 119.97544 * 180.28239 * 21 20 19 34 34 H 1.07998 * 119.97397 * 180.02562 * 24 22 21 35 35 H 1.07997 * 120.03073 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6409 -4.1249 -1.1667 12 8 3.3561 -5.1044 -1.1687 13 6 2.2419 -3.4804 -2.4692 14 1 2.4040 -2.4026 -2.4767 15 6 0.8483 -3.8993 -2.9647 16 6 1.5594 -4.5588 -4.1289 17 8 1.1904 -5.1868 -5.0986 18 7 2.7756 -4.1682 -3.6585 19 6 2.6581 -4.1448 1.2132 20 6 1.7787 -4.8189 2.0501 21 6 2.2307 -5.3477 3.2433 22 6 3.5573 -5.1968 3.6101 23 9 3.9963 -5.7103 4.7801 24 6 4.4346 -4.5198 2.7796 25 6 3.9879 -3.9942 1.5832 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 0.3424 -4.6040 -2.3047 30 1 0.2165 -3.0602 -3.2559 31 1 3.6783 -4.2966 -3.9894 32 1 0.7430 -4.9336 1.7661 33 1 1.5480 -5.8760 3.8924 34 1 5.4690 -4.4035 3.0674 35 1 4.6724 -3.4666 0.9355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118651479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -72.785256 kcal Electronic energy + Delta-G solvation = -22999.328595 eV Core-core repulsion = 19298.297119 eV Total energy + Delta-G solvation = -3701.031477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.86925 -42.23708 -40.78561 -39.17860 -37.41302 -36.73537 -34.53299 -32.15474 -31.12224 -29.64881 -28.87216 -26.90615 -25.01144 -23.93861 -23.47796 -21.10126 -20.48885 -18.80674 -18.73389 -18.43790 -18.40676 -17.73828 -17.27712 -17.12119 -16.58879 -16.50945 -16.01200 -15.55811 -15.42931 -14.72022 -14.53151 -14.38869 -14.19537 -14.03860 -13.76487 -13.48826 -13.25524 -13.16458 -12.90846 -12.81553 -12.59122 -12.16595 -12.10360 -11.70532 -11.34156 -11.18588 -10.56074 -10.25604 -10.10156 -10.08836 -9.23636 -8.16644 -6.29225 0.07783 0.26330 1.32043 1.38757 1.45711 1.51855 1.57342 1.88653 2.36739 2.47611 2.58515 2.93242 3.16448 3.26951 3.47003 3.60787 3.79884 3.91765 4.22470 4.25671 4.41235 4.46470 4.67287 4.80754 4.91468 5.00825 5.09171 5.10865 5.15455 5.22987 5.43459 5.63045 5.75621 5.80590 5.99966 6.06720 6.38389 6.79771 7.10176 7.23847 7.42489 8.88577 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.006941 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.603950 B = 4032.989257 C = 6190.455591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.033 3.967 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.245 3.755 10 N -0.551 5.551 11 C 0.518 3.482 12 O -0.569 6.569 13 C 0.124 3.876 14 H 0.148 0.852 15 C -0.148 4.148 16 C 0.533 3.467 17 O -0.547 6.547 18 N -0.717 5.717 19 C 0.132 3.868 20 C -0.101 4.101 21 C -0.136 4.136 22 C 0.078 3.922 23 F -0.142 7.142 24 C -0.141 4.141 25 C -0.095 4.095 26 H 0.268 0.732 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.123 0.877 30 H 0.150 0.850 31 H 0.410 0.590 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -4.781 2.840 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.126 3.874 10 N -0.278 5.278 11 C 0.306 3.694 12 O -0.449 6.449 13 C 0.016 3.984 14 H 0.165 0.835 15 C -0.188 4.188 16 C 0.320 3.680 17 O -0.424 6.424 18 N -0.376 5.376 19 C 0.041 3.959 20 C -0.121 4.121 21 C -0.155 4.155 22 C 0.059 3.941 23 F -0.121 7.121 24 C -0.160 4.160 25 C -0.115 4.115 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.141 0.859 30 H 0.168 0.832 31 H 0.252 0.748 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.174 0.826 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.007 -5.507 2.321 6.690 hybrid contribution 1.052 1.042 0.196 1.493 sum 4.059 -4.465 2.516 6.538 Atomic orbital electron populations 1.69962 1.06839 1.28145 1.49991 1.25434 0.95385 1.01548 0.94468 0.85761 0.78629 0.80085 0.78435 1.19698 1.21390 1.20076 1.21594 0.93459 0.91203 1.52251 0.92572 1.19467 0.87048 0.81634 0.99205 1.45816 1.45151 1.34174 1.02654 1.20809 0.79710 0.83042 0.85800 1.90672 1.39204 1.27143 1.87853 1.22283 0.93484 0.99531 0.83141 0.83451 1.23922 0.96644 1.03290 0.94993 1.22416 0.83862 0.76821 0.84916 1.90714 1.77168 1.42691 1.31791 1.48513 1.09063 1.56230 1.23816 1.17950 0.93393 0.96678 0.87923 1.21253 1.00746 0.96062 0.93995 1.21202 0.94413 1.02148 0.97737 1.17768 0.93647 0.99411 0.83279 1.91475 1.90122 1.85132 1.45378 1.21142 1.01197 0.99614 0.94090 1.21139 0.95355 0.98741 0.96219 0.92295 0.92407 0.95346 0.85906 0.83230 0.74786 0.83606 0.81825 0.82631 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.27 13.29 21.45 0.28 -43.98 16 2 C 0.03 1.54 5.46 84.65 0.46 2.00 16 3 Si 0.94 37.77 29.54 68.60 2.03 39.80 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.55 -24.29 8.94 25.60 0.23 -24.06 16 8 H 0.06 2.54 7.81 -2.91 -0.02 2.52 16 9 C 0.25 9.67 4.83 85.63 0.41 10.08 16 10 N -0.55 -19.75 2.51 -635.24 -1.59 -21.35 16 11 C 0.52 18.17 7.04 87.66 0.62 18.79 16 12 O -0.57 -22.73 16.42 -3.05 -0.05 -22.78 16 13 C 0.12 3.65 3.78 44.21 0.17 3.82 16 14 H 0.15 4.31 7.58 -2.39 -0.02 4.29 16 15 C -0.15 -3.87 6.66 30.36 0.20 -3.66 16 16 C 0.53 16.48 9.85 87.60 0.86 17.34 16 17 O -0.55 -20.51 18.03 -3.02 -0.05 -20.56 16 18 N -0.72 -20.38 6.91 -456.60 -3.15 -23.53 16 19 C 0.13 4.57 4.78 38.12 0.18 4.75 16 20 C -0.10 -3.02 9.65 22.39 0.22 -2.81 16 21 C -0.14 -3.54 10.02 22.30 0.22 -3.32 16 22 C 0.08 2.15 7.30 22.38 0.16 2.32 16 23 F -0.14 -3.78 17.27 44.97 0.78 -3.00 16 24 C -0.14 -3.97 10.02 22.29 0.22 -3.75 16 25 C -0.09 -3.12 9.52 22.39 0.21 -2.90 16 26 H 0.27 12.57 8.31 -92.70 -0.77 11.80 16 27 H 0.06 2.17 5.97 -2.39 -0.01 2.16 16 28 H 0.03 1.22 7.84 -2.39 -0.02 1.20 16 29 H 0.12 3.02 8.00 -2.39 -0.02 3.00 16 30 H 0.15 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.41 10.48 8.96 -92.71 -0.83 9.65 16 32 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -58.06 317.97 2.72 -55.34 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.31 Total: 21.47 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 4.18 Total: 18.60 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -4.46 Total: -88.86 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.10 Total: -43.34 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -58.06 2.72 -55.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118651479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.449 kcal (2) G-P(sol) polarization free energy of solvation -58.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds