Wall clock time and date at job start Tue Mar 31 2020 06:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47153 * 267.94280 * 3 2 1 5 5 C 1.36945 * 119.99689 * 264.44007 * 4 3 2 6 6 H 1.08001 * 119.99639 * 196.57078 * 5 4 3 7 7 C 1.38810 * 119.99953 * 16.57232 * 5 4 3 8 8 N 1.31621 * 119.99931 * 22.45838 * 7 5 4 9 9 Si 1.86807 * 119.99851 * 202.45032 * 7 5 4 10 10 H 1.48500 * 109.46960 * 90.00440 * 9 7 5 11 11 H 1.48500 * 109.47031 * 210.00301 * 9 7 5 12 12 H 1.48493 * 109.47178 * 330.00160 * 9 7 5 13 13 C 1.46497 * 120.00523 * 84.44289 * 4 3 2 14 14 C 1.50693 * 109.47148 * 270.00285 * 13 4 3 15 15 C 1.33635 * 126.04206 * 90.01684 * 14 13 4 16 16 N 1.31784 * 114.50202 * 180.02562 * 15 14 13 17 17 C 1.29020 * 117.12503 * 0.02562 * 16 15 14 18 18 C 1.50700 * 124.91804 * 180.02562 * 17 16 15 19 19 H 1.09001 * 110.27802 * 164.32443 * 18 17 16 20 20 C 1.54948 * 110.30763 * 286.41211 * 18 17 16 21 21 C 1.55414 * 100.89317 * 155.28643 * 20 18 17 22 22 C 1.54382 * 102.30975 * 325.99246 * 21 20 18 23 23 O 1.43238 * 107.58867 * 21.28342 * 22 21 20 24 24 S 1.70981 * 110.16605 * 359.72509 * 17 16 15 25 25 H 4.40640 * 5.51399 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46664 * 147.94099 * 3 2 1 27 27 H 1.09005 * 109.47140 * 27.94665 * 3 2 1 28 28 H 0.97003 * 119.99478 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46560 * 29.99929 * 13 4 3 30 30 H 1.08995 * 109.47561 * 149.99499 * 13 4 3 31 31 H 1.08001 * 122.75113 * 0.02562 * 15 14 13 32 32 H 1.08999 * 111.12757 * 273.28210 * 20 18 17 33 33 H 1.08999 * 111.12277 * 37.44017 * 20 18 17 34 34 H 1.09000 * 110.88001 * 207.75707 * 21 20 18 35 35 H 1.09003 * 110.76218 * 84.17684 * 21 20 18 36 36 H 1.09001 * 109.82955 * 261.77286 * 22 21 20 37 37 H 1.09004 * 109.90537 * 140.84195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 0.0505 1.3802 5 6 3.4704 1.2521 1.9447 6 1 4.0713 1.2780 2.8417 7 6 3.0387 2.4366 1.3639 8 7 1.9849 2.4370 0.5752 9 14 3.9531 4.0301 1.7018 10 1 5.0219 4.2122 0.6870 11 1 3.0040 5.1700 1.6311 12 1 4.5602 3.9748 3.0558 13 6 3.2633 -1.1851 2.1567 14 6 1.9742 -1.4550 2.8891 15 6 0.9408 -2.1647 2.4264 16 7 -0.0759 -2.2567 3.2598 17 6 0.0421 -1.6636 4.3995 18 6 -1.0078 -1.6554 5.4805 19 1 -0.5728 -1.3347 6.4271 20 6 -2.1804 -0.7233 5.0843 21 6 -3.3388 -1.3377 5.9184 22 6 -2.9904 -2.8417 5.9076 23 8 -1.5928 -2.9602 5.6172 24 16 1.5656 -0.8952 4.5090 25 1 -1.0500 0.0002 0.0000 26 1 3.0089 0.8718 -0.5455 27 1 3.0098 -0.9070 -0.4816 28 1 1.6831 3.2649 0.1696 29 1 3.4801 -2.0155 1.4847 30 1 4.0748 -1.0789 2.8766 31 1 0.9389 -2.6252 1.4495 32 1 -1.9822 0.3061 5.3829 33 1 -2.3893 -0.7871 4.0164 34 1 -4.3008 -1.1589 5.4380 35 1 -3.3330 -0.9455 6.9354 36 1 -3.5722 -3.3505 5.1389 37 1 -3.2039 -3.2791 6.8829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120065836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:35 Heat of formation + Delta-G solvation = 85.379098 kcal Electronic energy + Delta-G solvation = -20981.594251 eV Core-core repulsion = 17853.634471 eV Total energy + Delta-G solvation = -3127.959780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66794 -38.47446 -36.22102 -32.33321 -32.02879 -31.58701 -30.68182 -28.77485 -26.25854 -25.63346 -24.07446 -22.17962 -21.65294 -21.34800 -18.72467 -17.78082 -17.45236 -16.48777 -16.24808 -15.81926 -15.15331 -14.87406 -14.22935 -13.98994 -13.72699 -13.52324 -13.37243 -13.11276 -12.97965 -12.24515 -11.79031 -11.73181 -11.54349 -11.42015 -11.37292 -11.20550 -10.90429 -10.88129 -10.41918 -10.33926 -10.11104 -9.60615 -9.03898 -8.99380 -8.88023 -8.54906 -8.43765 -8.01490 -7.20304 -5.94064 -3.31927 1.37771 1.99096 2.49903 3.29562 3.36672 3.38206 3.47925 4.03576 4.16825 4.35237 4.36692 4.46631 4.70248 4.81900 4.98873 5.11584 5.20889 5.22736 5.54344 5.59610 5.66973 5.75790 5.78167 5.82792 5.90236 5.90344 5.93856 6.16321 6.30490 6.56997 6.63448 6.89517 7.01734 7.12943 7.38864 7.61707 8.10695 8.45448 8.94269 9.18946 9.58635 10.03975 11.07841 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.004913 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.262595 B = 5697.226137 C = 5912.310998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.100 4.100 3 C 0.266 3.734 4 N -0.568 5.568 5 C -0.265 4.265 6 H 0.079 0.921 7 C 0.008 3.992 8 N -0.877 5.877 9 Si 0.904 3.096 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.207 3.793 14 C -0.185 4.185 15 C 0.014 3.986 16 N -0.444 5.444 17 C -0.005 4.005 18 C 0.171 3.829 19 H 0.084 0.916 20 C -0.143 4.143 21 C -0.154 4.154 22 C 0.052 3.948 23 O -0.363 6.363 24 S 0.120 5.880 25 H 0.186 0.814 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.257 0.743 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.161 0.839 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 -6.961 7.733 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.103 4.103 3 C 0.141 3.859 4 N -0.285 5.285 5 C -0.395 4.395 6 H 0.097 0.903 7 C -0.193 4.193 8 N -0.519 5.519 9 Si 0.733 3.267 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 C 0.078 3.922 14 C -0.310 4.310 15 C -0.137 4.137 16 N -0.158 5.158 17 C -0.283 4.283 18 C 0.110 3.890 19 H 0.102 0.898 20 C -0.182 4.182 21 C -0.192 4.192 22 C -0.025 4.025 23 O -0.282 6.282 24 S 0.373 5.627 25 H 0.203 0.797 26 H 0.117 0.883 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.178 0.822 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.883 -6.689 8.263 11.698 hybrid contribution -0.492 0.999 -0.667 1.298 sum -5.375 -5.689 7.596 10.906 Atomic orbital electron populations 1.24089 0.95227 1.07580 1.03910 1.24064 0.95090 0.94275 0.96890 1.17923 0.83023 0.99273 0.85674 1.44664 1.72780 1.02543 1.08494 1.19304 1.26153 0.82512 1.11502 0.90327 1.24991 0.96166 0.98040 1.00099 1.70165 1.20912 1.26704 1.34083 0.86265 0.79267 0.82929 0.78218 1.21151 1.21805 1.20290 1.19682 0.89479 0.90012 0.93034 1.27638 1.06182 1.01104 0.96098 1.21332 0.88749 1.03387 1.00250 1.65987 1.29130 1.19075 1.01620 1.26353 0.99967 1.04038 0.97896 1.21152 0.90807 0.83903 0.93161 0.89785 1.23316 0.93233 0.99575 1.02039 1.23141 0.99672 0.95430 1.00959 1.23102 0.82877 0.96076 1.00439 1.88504 1.21161 1.26434 1.92079 1.83697 1.11527 1.52068 1.15398 0.79680 0.88347 0.94203 0.93256 0.91411 0.91759 0.82186 0.89522 0.89464 0.89885 0.90496 0.91347 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.68 19.18 29.55 0.57 -6.11 16 2 C -0.10 -2.38 10.58 -37.12 -0.39 -2.78 16 3 C 0.27 6.01 5.45 -6.83 -0.04 5.97 16 4 N -0.57 -13.03 2.49 -177.95 -0.44 -13.47 16 5 C -0.27 -6.68 9.66 -15.06 -0.15 -6.83 16 6 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 7 C 0.01 0.21 4.85 -17.43 -0.08 0.12 16 8 N -0.88 -23.98 9.49 55.49 0.53 -23.45 16 9 Si 0.90 20.64 29.61 -169.99 -5.03 15.61 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.21 4.02 6.23 -5.20 -0.03 3.99 16 14 C -0.18 -3.68 5.90 -35.92 -0.21 -3.89 16 15 C 0.01 0.29 10.45 -19.18 -0.20 0.09 16 16 N -0.44 -9.05 10.52 -11.86 -0.12 -9.17 16 17 C 0.00 -0.09 6.34 -13.46 -0.09 -0.18 16 18 C 0.17 2.62 3.95 -26.85 -0.11 2.51 16 19 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 20 C -0.14 -1.92 6.57 -24.42 -0.16 -2.08 16 21 C -0.15 -1.57 7.02 -24.73 -0.17 -1.75 16 22 C 0.05 0.60 7.80 37.88 0.30 0.90 16 23 O -0.36 -5.76 11.01 -35.23 -0.39 -6.15 16 24 S 0.12 2.22 23.18 -107.50 -2.49 -0.27 16 25 H 0.19 3.82 7.80 -54.09 -0.42 3.39 16 26 H 0.10 2.42 6.42 -51.93 -0.33 2.09 16 27 H 0.04 0.78 7.97 -51.93 -0.41 0.36 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.07 1.15 7.95 -51.92 -0.41 0.74 16 30 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 31 H 0.16 3.09 8.06 -52.49 -0.42 2.67 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -30.09 330.93 -8.66 -38.75 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.93 Total: 3.20 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.77 Total: -10.03 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.04 Total: -46.09 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.39 Total: -6.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.49 Total: -0.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.09 -8.66 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120065836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.126 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds