Wall clock time and date at job start Tue Mar 31 2020 06:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47153 * 267.94280 * 3 2 1 5 5 C 1.36945 * 119.99689 * 264.44007 * 4 3 2 6 6 H 1.08001 * 119.99639 * 196.57078 * 5 4 3 7 7 C 1.38810 * 119.99953 * 16.57232 * 5 4 3 8 8 N 1.31621 * 119.99931 * 22.45838 * 7 5 4 9 9 Si 1.86807 * 119.99851 * 202.45032 * 7 5 4 10 10 H 1.48500 * 109.46960 * 90.00440 * 9 7 5 11 11 H 1.48500 * 109.47031 * 210.00301 * 9 7 5 12 12 H 1.48493 * 109.47178 * 330.00160 * 9 7 5 13 13 C 1.46497 * 120.00523 * 84.44289 * 4 3 2 14 14 C 1.50693 * 109.47148 * 270.00285 * 13 4 3 15 15 C 1.33635 * 126.04206 * 90.01684 * 14 13 4 16 16 N 1.31784 * 114.50202 * 180.02562 * 15 14 13 17 17 C 1.29020 * 117.12503 * 0.02562 * 16 15 14 18 18 C 1.50700 * 124.91804 * 180.02562 * 17 16 15 19 19 H 1.09001 * 110.27802 * 164.32443 * 18 17 16 20 20 C 1.54948 * 110.30763 * 286.41211 * 18 17 16 21 21 C 1.55414 * 100.89317 * 155.28643 * 20 18 17 22 22 C 1.54382 * 102.30975 * 325.99246 * 21 20 18 23 23 O 1.43238 * 107.58867 * 21.28342 * 22 21 20 24 24 S 1.70981 * 110.16605 * 359.72509 * 17 16 15 25 25 H 4.40640 * 5.51399 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46664 * 147.94099 * 3 2 1 27 27 H 1.09005 * 109.47140 * 27.94665 * 3 2 1 28 28 H 0.97003 * 119.99478 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46560 * 29.99929 * 13 4 3 30 30 H 1.08995 * 109.47561 * 149.99499 * 13 4 3 31 31 H 1.08001 * 122.75113 * 0.02562 * 15 14 13 32 32 H 1.08999 * 111.12757 * 273.28210 * 20 18 17 33 33 H 1.08999 * 111.12277 * 37.44017 * 20 18 17 34 34 H 1.09000 * 110.88001 * 207.75707 * 21 20 18 35 35 H 1.09003 * 110.76218 * 84.17684 * 21 20 18 36 36 H 1.09001 * 109.82955 * 261.77286 * 22 21 20 37 37 H 1.09004 * 109.90537 * 140.84195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 0.0505 1.3802 5 6 3.4704 1.2521 1.9447 6 1 4.0713 1.2780 2.8417 7 6 3.0387 2.4366 1.3639 8 7 1.9849 2.4370 0.5752 9 14 3.9531 4.0301 1.7018 10 1 5.0219 4.2122 0.6870 11 1 3.0040 5.1700 1.6311 12 1 4.5602 3.9748 3.0558 13 6 3.2633 -1.1851 2.1567 14 6 1.9742 -1.4550 2.8891 15 6 0.9408 -2.1647 2.4264 16 7 -0.0759 -2.2567 3.2598 17 6 0.0421 -1.6636 4.3995 18 6 -1.0078 -1.6554 5.4805 19 1 -0.5728 -1.3347 6.4271 20 6 -2.1804 -0.7233 5.0843 21 6 -3.3388 -1.3377 5.9184 22 6 -2.9904 -2.8417 5.9076 23 8 -1.5928 -2.9602 5.6172 24 16 1.5656 -0.8952 4.5090 25 1 -1.0500 0.0002 0.0000 26 1 3.0089 0.8718 -0.5455 27 1 3.0098 -0.9070 -0.4816 28 1 1.6831 3.2649 0.1696 29 1 3.4801 -2.0155 1.4847 30 1 4.0748 -1.0789 2.8766 31 1 0.9389 -2.6252 1.4495 32 1 -1.9822 0.3061 5.3829 33 1 -2.3893 -0.7871 4.0164 34 1 -4.3008 -1.1589 5.4380 35 1 -3.3330 -0.9455 6.9354 36 1 -3.5722 -3.3505 5.1389 37 1 -3.2039 -3.2791 6.8829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120065836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:34 Heat of formation + Delta-G solvation = 68.177117 kcal Electronic energy + Delta-G solvation = -20982.340185 eV Core-core repulsion = 17853.634471 eV Total energy + Delta-G solvation = -3128.705713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93984 -39.80974 -37.94722 -33.94742 -33.40501 -33.14360 -32.10287 -30.21934 -28.02320 -27.15923 -25.56643 -23.59933 -22.93122 -22.58681 -20.18295 -19.34092 -19.07597 -18.26129 -17.38999 -17.11530 -16.78500 -16.19810 -15.71268 -15.51955 -15.36612 -15.01992 -14.93396 -14.37950 -14.22250 -13.76101 -13.46122 -13.24760 -12.98050 -12.75570 -12.70546 -12.58085 -12.29072 -12.21060 -12.06100 -11.86573 -11.81225 -10.84789 -10.80125 -10.67159 -10.45300 -10.30453 -10.01594 -9.54616 -9.04126 -7.86463 -5.26617 -0.11329 0.51448 0.97580 1.48654 1.51789 1.58085 1.97343 2.36979 2.53519 2.62020 2.90626 3.20747 3.27979 3.60691 3.83227 3.85333 3.91944 4.07656 4.12420 4.31050 4.33296 4.40708 4.43529 4.74827 4.81218 4.81719 4.87675 4.92117 4.97516 5.06460 5.19300 5.30462 5.37005 5.61472 5.67645 5.97581 6.23475 6.94092 7.05239 7.37869 7.76046 8.18123 9.14096 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.004913 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.262595 B = 5697.226137 C = 5912.310998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.114 4.114 3 C 0.267 3.733 4 N -0.580 5.580 5 C -0.265 4.265 6 H 0.079 0.921 7 C -0.038 4.038 8 N -0.908 5.908 9 Si 0.958 3.042 10 H -0.284 1.284 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.208 3.792 14 C -0.204 4.204 15 C 0.014 3.986 16 N -0.472 5.472 17 C 0.003 3.997 18 C 0.164 3.836 19 H 0.107 0.893 20 C -0.144 4.144 21 C -0.140 4.140 22 C 0.043 3.957 23 O -0.390 6.390 24 S 0.133 5.867 25 H 0.203 0.797 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.247 0.753 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -7.501 9.470 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.117 4.117 3 C 0.142 3.858 4 N -0.298 5.298 5 C -0.395 4.395 6 H 0.097 0.903 7 C -0.236 4.236 8 N -0.552 5.552 9 Si 0.787 3.213 10 H -0.211 1.211 11 H -0.232 1.232 12 H -0.195 1.195 13 C 0.079 3.921 14 C -0.328 4.328 15 C -0.137 4.137 16 N -0.187 5.187 17 C -0.275 4.275 18 C 0.103 3.897 19 H 0.125 0.875 20 C -0.183 4.183 21 C -0.178 4.178 22 C -0.033 4.033 23 O -0.310 6.310 24 S 0.387 5.613 25 H 0.220 0.780 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.348 -7.256 10.022 13.480 hybrid contribution -0.400 0.993 -1.097 1.533 sum -5.748 -6.263 8.925 12.326 Atomic orbital electron populations 1.24631 0.96037 1.07515 1.03797 1.24478 0.95780 0.94374 0.97035 1.17913 0.82553 0.99597 0.85776 1.44649 1.73250 1.02860 1.09069 1.19487 1.25499 0.83511 1.10954 0.90327 1.25546 0.96920 1.00362 1.00751 1.70310 1.22484 1.26391 1.35971 0.85412 0.77890 0.79747 0.78239 1.21090 1.23153 1.19494 1.19796 0.89370 0.89397 0.93527 1.27580 1.06074 1.01952 0.97223 1.21467 0.88763 1.03142 1.00364 1.66044 1.29618 1.20518 1.02487 1.27094 1.00255 1.02204 0.97986 1.21439 0.90801 0.84549 0.92947 0.87522 1.23300 0.93997 1.00058 1.00981 1.23139 0.98882 0.93881 1.01859 1.23366 0.80820 0.97382 1.01737 1.88465 1.23419 1.26741 1.92329 1.83574 1.11535 1.51560 1.14641 0.78025 0.90820 0.91051 0.94381 0.88903 0.90788 0.81912 0.88453 0.92250 0.88322 0.87955 0.91526 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.91 19.18 74.32 1.43 -12.48 16 2 C -0.11 -5.41 10.58 31.13 0.33 -5.08 16 3 C 0.27 11.98 5.45 84.58 0.46 12.44 16 4 N -0.58 -26.23 2.49 -716.92 -1.78 -28.02 16 5 C -0.26 -13.22 9.66 84.03 0.81 -12.41 16 6 H 0.08 3.85 7.90 -2.91 -0.02 3.82 16 7 C -0.04 -2.00 4.85 84.86 0.41 -1.59 16 8 N -0.91 -50.40 9.49 21.65 0.21 -50.20 16 9 Si 0.96 42.76 29.61 68.60 2.03 44.79 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 C 0.21 7.76 6.23 85.63 0.53 8.29 16 14 C -0.20 -7.90 5.90 24.64 0.15 -7.75 16 15 C 0.01 0.54 10.45 83.66 0.87 1.41 16 16 N -0.47 -18.97 10.52 -191.45 -2.01 -20.98 16 17 C 0.00 0.09 6.34 88.52 0.56 0.65 16 18 C 0.16 4.72 3.95 30.51 0.12 4.84 16 19 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 20 C -0.14 -3.61 6.57 32.09 0.21 -3.40 16 21 C -0.14 -2.41 7.02 31.89 0.22 -2.19 16 22 C 0.04 0.89 7.80 72.45 0.56 1.45 16 23 O -0.39 -11.69 11.01 -148.98 -1.64 -13.33 16 24 S 0.13 4.78 23.18 -56.49 -1.31 3.47 16 25 H 0.20 8.27 7.80 -4.42 -0.03 8.23 16 26 H 0.07 3.68 6.42 -2.39 -0.02 3.67 16 27 H 0.07 2.69 7.97 -2.38 -0.02 2.67 16 28 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.09 2.96 7.95 -2.38 -0.02 2.94 16 30 H 0.07 2.60 8.02 -2.39 -0.02 2.58 16 31 H 0.16 6.20 8.06 -2.91 -0.02 6.18 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -64.34 330.93 3.22 -61.12 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.06 Total: 18.96 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 6.67 Total: -15.81 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -3.59 Total: -99.19 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.64 Total: -13.33 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.31 Total: 3.47 kcal Total: -64.34 3.22 -61.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120065836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.297 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds