Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99714 * 2 1 4 4 N 1.46499 * 109.47280 * 125.00040 * 3 2 1 5 5 C 1.46497 * 119.99982 * 266.49037 * 4 3 2 6 6 C 1.50695 * 109.47141 * 269.99816 * 5 4 3 7 7 H 1.08007 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00040 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00006 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47139 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47122 * 119.99878 * 10 8 6 13 13 H 1.48501 * 109.47328 * 240.00058 * 10 8 6 14 14 C 1.34776 * 119.99962 * 86.48757 * 4 3 2 15 15 O 1.21624 * 120.00226 * 174.27243 * 14 4 3 16 16 C 1.47252 * 120.00205 * 354.55115 * 14 4 3 17 17 N 1.30556 * 125.54495 * 172.81818 * 16 14 4 18 18 C 1.30711 * 115.90743 * 179.77569 * 17 16 14 19 19 C 1.50703 * 122.10667 * 180.21542 * 18 17 16 20 20 C 1.53004 * 117.49370 * 163.93980 * 19 18 17 21 21 C 1.53003 * 117.49372 * 95.32047 * 19 18 17 22 22 C 1.34231 * 115.78285 * 0.51867 * 18 17 16 23 23 S 1.71068 * 109.09077 * 359.72258 * 22 18 17 24 24 H 1.07997 * 119.99529 * 0.02562 * 1 2 3 25 25 H 1.07993 * 119.99564 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00428 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47967 * 4.99608 * 3 2 1 28 28 H 1.09006 * 109.46840 * 244.99955 * 3 2 1 29 29 H 1.08998 * 109.46831 * 29.99959 * 5 4 3 30 30 H 1.09002 * 109.47161 * 149.99802 * 5 4 3 31 31 H 0.96999 * 119.99875 * 179.97438 * 9 8 6 32 32 H 1.08991 * 115.55031 * 309.64915 * 19 18 17 33 33 H 1.08999 * 117.50108 * 0.02562 * 20 19 18 34 34 H 1.09007 * 117.49170 * 145.02197 * 20 19 18 35 35 H 1.09000 * 117.49674 * 214.97310 * 21 19 18 36 36 H 1.09000 * 117.50248 * 359.97438 * 21 19 18 37 37 H 1.07999 * 125.45400 * 179.71677 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5843 1.9349 2.4022 6 6 2.9392 3.3994 2.4009 7 1 3.4220 3.8373 1.5396 8 6 2.6486 4.1802 3.4995 9 7 2.0613 3.6470 4.5484 10 14 3.0893 5.9956 3.4981 11 1 3.7380 6.3465 2.2092 12 1 1.8556 6.8046 3.6683 13 1 4.0251 6.2787 4.6158 14 6 4.2263 0.8020 1.0031 15 8 5.0342 0.9161 1.9051 16 6 4.5969 0.0902 -0.2315 17 7 5.7912 -0.3472 -0.5261 18 6 5.9079 -0.9596 -1.6749 19 6 7.2212 -1.5240 -2.1520 20 6 7.1809 -2.5305 -3.3037 21 6 7.4928 -3.0055 -1.8831 22 6 4.7854 -1.0486 -2.4057 23 16 3.5027 -0.3030 -1.5541 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3587 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.5074 1.8221 2.5275 30 1 3.0998 1.4369 3.2234 31 1 1.8572 4.1962 5.3214 32 1 8.0696 -0.8410 -2.1095 33 1 6.2045 -2.7841 -3.7165 34 1 8.0029 -2.5096 -4.0193 35 1 8.5199 -3.2972 -1.6641 36 1 6.7217 -3.5718 -1.3607 37 1 4.7051 -1.5159 -3.3761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123885698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = 70.838346 kcal Electronic energy + Delta-G solvation = -20656.080892 eV Core-core repulsion = 17527.490578 eV Total energy + Delta-G solvation = -3128.590314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17490 -38.99692 -36.67994 -35.84336 -33.35635 -32.19779 -30.27280 -28.02097 -26.50310 -25.49918 -24.03052 -22.55488 -22.03951 -20.32678 -19.28991 -19.09389 -17.88650 -16.59077 -16.48574 -16.02912 -15.69167 -15.13451 -14.97489 -14.62259 -14.28219 -13.77825 -13.37688 -13.13590 -13.00924 -12.44680 -12.24865 -12.10529 -11.72781 -11.48418 -11.23774 -11.01268 -10.89221 -10.73284 -10.65882 -10.46549 -10.25908 -9.90733 -9.71611 -9.61403 -9.27387 -9.09941 -8.47834 -8.43877 -7.88729 -6.08465 -4.13358 0.43587 1.32965 1.79229 2.32210 2.53424 3.29197 3.32223 3.37692 3.43403 3.69188 3.75011 4.29370 4.43291 4.68432 4.75110 4.79973 5.01131 5.06644 5.19608 5.23892 5.27933 5.36355 5.39999 5.42162 5.64813 5.86583 5.88897 5.97514 5.99823 6.08166 6.63483 6.73272 6.89921 7.29256 7.37454 7.74030 7.87846 8.13105 8.17101 8.73193 8.92502 9.51875 10.99802 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.004452 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.963627 B = 6287.932459 C = 7132.247275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.122 3.878 4 N -0.581 5.581 5 C 0.250 3.750 6 C -0.530 4.530 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.579 3.421 15 O -0.493 6.493 16 C 0.013 3.987 17 N -0.401 5.401 18 C 0.085 3.915 19 C -0.084 4.084 20 C -0.172 4.172 21 C -0.164 4.164 22 C -0.312 4.312 23 S 0.208 5.792 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -11.608 -16.999 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.206 4.206 3 C -0.003 4.003 4 N -0.313 5.313 5 C 0.132 3.868 6 C -0.568 4.568 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.361 3.639 15 O -0.367 6.367 16 C -0.264 4.264 17 N -0.116 5.116 18 C -0.052 4.052 19 C -0.104 4.104 20 C -0.209 4.209 21 C -0.202 4.202 22 C -0.452 4.452 23 S 0.467 5.533 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.031 -11.210 -16.104 19.622 hybrid contribution 1.060 0.546 -0.415 1.262 sum 1.091 -10.664 -16.520 19.693 Atomic orbital electron populations 1.23852 0.95388 1.02172 0.98666 1.23404 0.96785 0.98712 1.01691 1.20950 0.93554 0.96699 0.89116 1.48125 1.11256 1.56657 1.15260 1.19428 0.96008 0.93070 0.78252 1.21451 1.39777 0.93538 1.02063 0.92154 1.24917 0.94911 0.98985 0.95109 1.69935 1.41668 1.36200 1.05385 0.86425 0.78096 0.84566 0.78256 1.19733 1.20928 1.20804 1.16750 0.83210 0.79758 0.84212 1.90843 1.48601 1.57697 1.39529 1.28020 0.91485 1.06393 1.00529 1.66348 1.20853 1.08720 1.15662 1.19319 0.95150 1.00661 0.90052 1.20376 0.94637 0.92519 1.02876 1.23025 1.03292 1.02989 0.91615 1.22974 1.02966 0.95748 0.98465 1.27045 0.99965 1.10564 1.07616 1.84810 1.11208 1.46639 1.10674 0.87877 0.88308 0.87009 0.87434 0.90574 0.94148 0.93490 0.92665 0.86224 0.88641 0.88130 0.88175 0.88703 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 14.32 29.01 0.42 -1.43 16 2 C -0.19 -2.46 7.89 -36.03 -0.28 -2.74 16 3 C 0.12 1.94 5.39 -5.19 -0.03 1.91 16 4 N -0.58 -12.31 2.45 -177.78 -0.43 -12.74 16 5 C 0.25 6.39 5.10 -5.20 -0.03 6.36 16 6 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 7 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 10 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.58 13.00 7.62 -12.60 -0.10 12.91 16 15 O -0.49 -13.31 16.71 5.26 0.09 -13.23 16 16 C 0.01 0.24 7.19 -14.43 -0.10 0.14 16 17 N -0.40 -7.51 10.57 -7.69 -0.08 -7.59 16 18 C 0.09 1.26 6.35 -84.48 -0.54 0.72 16 19 C -0.08 -0.99 6.29 -91.77 -0.58 -1.57 16 20 C -0.17 -1.46 9.89 -26.73 -0.26 -1.73 16 21 C -0.16 -1.63 10.23 -26.73 -0.27 -1.91 16 22 C -0.31 -3.82 10.23 29.32 0.30 -3.52 16 23 S 0.21 2.69 15.50 -107.50 -1.67 1.02 16 24 H 0.10 1.12 7.84 -52.49 -0.41 0.71 16 25 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 26 H 0.11 1.46 6.54 -50.92 -0.33 1.12 16 27 H 0.11 1.68 7.70 -51.93 -0.40 1.28 16 28 H 0.08 1.09 4.84 -25.40 -0.12 0.97 16 29 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.10 0.73 6.72 -51.93 -0.35 0.38 16 34 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.17 1.57 6.85 -52.49 -0.36 1.21 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -33.30 327.56 -7.78 -41.08 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.44 Total: -0.58 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.89 Total: -4.26 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.22 Total: -45.63 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.67 Total: 1.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.30 -7.78 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123885698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.921 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds