Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99714 * 2 1 4 4 N 1.46499 * 109.47280 * 125.00040 * 3 2 1 5 5 C 1.46497 * 119.99982 * 266.49037 * 4 3 2 6 6 C 1.50695 * 109.47141 * 269.99816 * 5 4 3 7 7 H 1.08007 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00040 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00006 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47139 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47122 * 119.99878 * 10 8 6 13 13 H 1.48501 * 109.47328 * 240.00058 * 10 8 6 14 14 C 1.34776 * 119.99962 * 86.48757 * 4 3 2 15 15 O 1.21624 * 120.00226 * 174.27243 * 14 4 3 16 16 C 1.47252 * 120.00205 * 354.55115 * 14 4 3 17 17 N 1.30556 * 125.54495 * 172.81818 * 16 14 4 18 18 C 1.30711 * 115.90743 * 179.77569 * 17 16 14 19 19 C 1.50703 * 122.10667 * 180.21542 * 18 17 16 20 20 C 1.53004 * 117.49370 * 163.93980 * 19 18 17 21 21 C 1.53003 * 117.49372 * 95.32047 * 19 18 17 22 22 C 1.34231 * 115.78285 * 0.51867 * 18 17 16 23 23 S 1.71068 * 109.09077 * 359.72258 * 22 18 17 24 24 H 1.07997 * 119.99529 * 0.02562 * 1 2 3 25 25 H 1.07993 * 119.99564 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00428 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47967 * 4.99608 * 3 2 1 28 28 H 1.09006 * 109.46840 * 244.99955 * 3 2 1 29 29 H 1.08998 * 109.46831 * 29.99959 * 5 4 3 30 30 H 1.09002 * 109.47161 * 149.99802 * 5 4 3 31 31 H 0.96999 * 119.99875 * 179.97438 * 9 8 6 32 32 H 1.08991 * 115.55031 * 309.64915 * 19 18 17 33 33 H 1.08999 * 117.50108 * 0.02562 * 20 19 18 34 34 H 1.09007 * 117.49170 * 145.02197 * 20 19 18 35 35 H 1.09000 * 117.49674 * 214.97310 * 21 19 18 36 36 H 1.09000 * 117.50248 * 359.97438 * 21 19 18 37 37 H 1.07999 * 125.45400 * 179.71677 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5843 1.9349 2.4022 6 6 2.9392 3.3994 2.4009 7 1 3.4220 3.8373 1.5396 8 6 2.6486 4.1802 3.4995 9 7 2.0613 3.6470 4.5484 10 14 3.0893 5.9956 3.4981 11 1 3.7380 6.3465 2.2092 12 1 1.8556 6.8046 3.6683 13 1 4.0251 6.2787 4.6158 14 6 4.2263 0.8020 1.0031 15 8 5.0342 0.9161 1.9051 16 6 4.5969 0.0902 -0.2315 17 7 5.7912 -0.3472 -0.5261 18 6 5.9079 -0.9596 -1.6749 19 6 7.2212 -1.5240 -2.1520 20 6 7.1809 -2.5305 -3.3037 21 6 7.4928 -3.0055 -1.8831 22 6 4.7854 -1.0486 -2.4057 23 16 3.5027 -0.3030 -1.5541 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3587 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.5074 1.8221 2.5275 30 1 3.0998 1.4369 3.2234 31 1 1.8572 4.1962 5.3214 32 1 8.0696 -0.8410 -2.1095 33 1 6.2045 -2.7841 -3.7165 34 1 8.0029 -2.5096 -4.0193 35 1 8.5199 -3.2972 -1.6641 36 1 6.7217 -3.5718 -1.3607 37 1 4.7051 -1.5159 -3.3761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123885698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = 48.788879 kcal Electronic energy + Delta-G solvation = -20657.037028 eV Core-core repulsion = 17527.490578 eV Total energy + Delta-G solvation = -3129.546451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.43078 -40.50287 -37.65570 -37.32010 -35.21316 -33.80763 -31.53763 -29.79197 -27.77806 -26.96042 -25.54341 -23.64123 -23.21110 -21.46697 -20.56149 -20.24063 -19.20666 -18.65466 -17.86256 -17.41741 -16.83552 -16.61232 -16.37054 -16.03204 -15.59249 -15.12086 -14.74992 -14.45565 -14.26749 -14.24400 -13.58321 -13.37761 -13.24978 -12.95982 -12.65563 -12.44583 -12.35372 -12.25338 -11.94838 -11.70040 -11.50312 -11.41436 -11.31059 -10.75052 -10.67207 -10.64209 -10.28696 -9.69328 -9.51249 -8.24326 -6.38247 -0.78382 0.13708 0.70174 1.23215 1.32028 1.36938 1.40192 1.51462 1.92908 2.18830 2.38884 2.84773 3.06209 3.22363 3.55309 3.88976 3.93612 4.03608 4.06130 4.16690 4.21280 4.30005 4.39521 4.72289 4.76070 4.90205 4.92656 5.02735 5.05640 5.15235 5.15827 5.24365 5.40788 5.66043 5.70847 5.83205 6.01299 6.34802 6.67939 6.70817 7.08936 7.32824 8.83528 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.004452 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.963627 B = 6287.932459 C = 7132.247275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.212 4.212 3 C 0.118 3.882 4 N -0.583 5.583 5 C 0.267 3.733 6 C -0.546 4.546 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.966 3.034 11 H -0.270 1.270 12 H -0.264 1.264 13 H -0.283 1.283 14 C 0.573 3.427 15 O -0.565 6.565 16 C -0.054 4.054 17 N -0.437 5.437 18 C 0.062 3.938 19 C -0.114 4.114 20 C -0.138 4.138 21 C -0.170 4.170 22 C -0.289 4.289 23 S 0.312 5.688 24 H 0.110 0.890 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.001 0.999 31 H 0.268 0.732 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -12.430 -20.683 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.232 4.232 3 C -0.006 4.006 4 N -0.314 5.314 5 C 0.147 3.853 6 C -0.585 4.585 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.790 3.210 11 H -0.194 1.194 12 H -0.189 1.189 13 H -0.209 1.209 14 C 0.358 3.642 15 O -0.444 6.444 16 C -0.327 4.327 17 N -0.155 5.155 18 C -0.075 4.075 19 C -0.135 4.135 20 C -0.175 4.175 21 C -0.208 4.208 22 C -0.429 4.429 23 S 0.569 5.431 24 H 0.128 0.872 25 H 0.144 0.856 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.489 -12.033 -19.826 23.239 hybrid contribution 1.428 0.692 0.606 1.699 sum -0.061 -11.341 -19.220 22.316 Atomic orbital electron populations 1.24165 0.94599 1.03831 0.94505 1.23191 0.97415 0.97232 1.05369 1.21234 0.92995 0.98666 0.87674 1.48048 1.12106 1.55897 1.15321 1.18888 0.95068 0.91928 0.79417 1.21690 1.39904 0.94764 1.02126 0.92985 1.25781 0.94627 1.03605 0.94604 1.70036 1.42371 1.37965 1.05970 0.85396 0.78354 0.79169 0.78050 1.19442 1.18924 1.20933 1.17329 0.82597 0.79163 0.85119 1.90766 1.50551 1.60546 1.42540 1.27082 0.93825 1.09937 1.01818 1.66307 1.22054 1.09233 1.17873 1.19719 0.97237 1.01183 0.89399 1.20456 0.93378 0.93305 1.06368 1.23182 1.04910 0.98741 0.90658 1.23045 1.03376 0.94168 1.00213 1.27656 0.98788 1.08042 1.08394 1.84253 1.08426 1.44026 1.06378 0.87206 0.85575 0.86674 0.87279 0.89101 0.94076 0.98133 0.92252 0.87192 0.86937 0.85949 0.87223 0.89566 0.76547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 14.32 67.77 0.97 -1.63 16 2 C -0.21 -5.23 7.89 25.64 0.20 -5.03 16 3 C 0.12 3.69 5.39 85.63 0.46 4.15 16 4 N -0.58 -25.96 2.45 -834.61 -2.04 -28.00 16 5 C 0.27 14.46 5.10 85.63 0.44 14.90 16 6 C -0.55 -31.73 9.39 25.60 0.24 -31.49 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.77 5.46 84.66 0.46 1.23 16 9 N -0.92 -55.38 13.29 21.45 0.28 -55.09 16 10 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 C 0.57 27.57 7.62 86.61 0.66 28.23 16 15 O -0.57 -33.45 16.71 -4.11 -0.07 -33.52 16 16 C -0.05 -2.04 7.19 87.25 0.63 -1.42 16 17 N -0.44 -16.96 10.57 -178.24 -1.88 -18.85 16 18 C 0.06 1.76 6.35 41.81 0.27 2.02 16 19 C -0.11 -2.58 6.29 -11.54 -0.07 -2.65 16 20 C -0.14 -1.83 9.89 30.60 0.30 -1.53 16 21 C -0.17 -3.12 10.23 30.60 0.31 -2.81 16 22 C -0.29 -6.04 10.23 66.90 0.68 -5.35 16 23 S 0.31 7.26 15.50 -56.49 -0.88 6.38 16 24 H 0.11 2.03 7.84 -2.91 -0.02 2.01 16 25 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 26 H 0.12 2.77 6.54 -3.91 -0.03 2.75 16 27 H 0.11 3.34 7.70 -2.39 -0.02 3.32 16 28 H 0.09 2.49 4.84 -19.25 -0.09 2.40 16 29 H 0.04 2.18 8.07 -2.39 -0.02 2.16 16 30 H 0.00 0.03 7.51 -2.39 -0.02 0.02 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.11 1.11 6.72 -2.39 -0.02 1.10 16 34 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.22 2.56 6.85 -2.91 -0.02 2.54 16 Total: -1.00 -79.79 327.56 3.99 -75.80 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.99 Total: 7.44 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.56 Total: -1.37 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.64 Total: -101.94 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.07 Total: -33.52 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 7.26 SS G_CDS: -0.88 Total: 6.38 kcal Total: -79.79 3.99 -75.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123885698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.590 kcal (2) G-P(sol) polarization free energy of solvation -79.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds