Wall clock time and date at job start Tue Mar 31 2020 06:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00149 * 2 1 4 4 H 1.48504 * 109.47119 * 270.00022 * 3 2 1 5 5 H 1.48500 * 109.47024 * 29.99806 * 3 2 1 6 6 H 1.48494 * 109.47393 * 149.99848 * 3 2 1 7 7 C 1.38812 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00104 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99835 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99934 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47232 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00041 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.47580 * 120.00234 * 180.02562 * 13 12 11 16 16 C 1.39403 * 120.16655 * 359.96895 * 15 13 12 17 17 C 1.38475 * 120.48617 * 180.02562 * 16 15 13 18 18 F 1.35095 * 119.78498 * 180.27992 * 17 16 15 19 19 C 1.38185 * 120.42112 * 0.02562 * 17 16 15 20 20 C 1.39362 * 119.91752 * 359.97438 * 19 17 16 21 21 C 1.46852 * 134.26466 * 180.02562 * 20 19 17 22 22 C 1.33967 * 106.15188 * 180.02562 * 21 20 19 23 23 O 1.34460 * 110.12836 * 359.97438 * 22 21 20 24 24 C 1.34618 * 110.92047 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00473 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00136 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.47452 * 60.00118 * 10 9 7 28 28 H 1.09005 * 109.47336 * 300.00363 * 10 9 7 29 29 H 1.09000 * 109.46777 * 60.00199 * 11 10 9 30 30 H 1.08998 * 109.46745 * 300.00044 * 11 10 9 31 31 H 0.97002 * 120.00212 * 0.02562 * 12 11 10 32 32 H 1.07996 * 119.75624 * 0.04912 * 16 15 13 33 33 H 1.08001 * 120.03581 * 180.02562 * 19 17 16 34 34 H 1.07999 * 126.91924 * 0.02562 * 21 20 19 35 35 H 1.08004 * 124.93455 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1914 -0.0004 12 7 6.3488 -3.4601 0.0001 13 6 7.6965 -3.4601 -0.0005 14 8 8.3045 -2.4072 -0.0020 15 6 8.4344 -4.7382 -0.0006 16 6 7.7409 -5.9475 0.0007 17 6 8.4266 -7.1506 0.0012 18 9 7.7403 -8.3142 -0.0033 19 6 9.8084 -7.1684 0.0010 20 6 10.5190 -5.9696 -0.0003 21 6 11.9463 -5.6241 -0.0013 22 6 12.0058 -4.2857 -0.0017 23 8 10.7651 -3.7674 -0.0016 24 6 9.8368 -4.7424 -0.0006 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3622 -0.0004 27 1 3.8484 -3.0435 -0.8881 28 1 3.8490 -3.0416 0.8919 29 1 5.8803 -1.6187 0.8887 30 1 5.8789 -1.6210 -0.8913 31 1 5.8638 -4.3002 0.0009 32 1 6.6610 -5.9461 0.0009 33 1 10.3368 -8.1103 0.0009 34 1 12.7799 -6.3107 -0.0017 35 1 12.9178 -3.7072 -0.0029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130602269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:44 Heat of formation + Delta-G solvation = -27.989557 kcal Electronic energy + Delta-G solvation = -21807.700839 eV Core-core repulsion = 18108.611850 eV Total energy + Delta-G solvation = -3699.088989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.28060 -42.91742 -39.87356 -37.73295 -35.92567 -34.08670 -33.30623 -31.52832 -30.70046 -29.83339 -28.16998 -24.95111 -23.42813 -22.88319 -22.09629 -21.52141 -20.55535 -18.53702 -18.21148 -17.72182 -17.37750 -16.64839 -16.50888 -15.83265 -15.74846 -15.43903 -15.33075 -14.64859 -14.19879 -13.92938 -13.83844 -13.62359 -13.47516 -13.32553 -12.97281 -12.64547 -12.22312 -11.92909 -11.64127 -11.52742 -10.99570 -10.86823 -10.69690 -10.17861 -10.09288 -9.64007 -9.15479 -8.97371 -8.94271 -8.75118 -7.32648 -5.81569 -3.19329 -0.01771 0.67096 1.75658 2.34048 2.56738 2.93499 3.29932 3.37506 3.41136 3.45164 3.57410 3.95219 4.07797 4.38512 4.56083 4.57451 4.67825 4.80990 4.99717 5.13166 5.28007 5.34488 5.42059 5.46401 5.53845 5.61157 5.62301 5.83071 5.92017 6.07866 6.27851 6.54591 6.55070 6.67700 7.37901 7.91454 8.07337 8.36324 9.13851 9.86114 10.04163 11.36224 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.003046 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.188575 B = 9189.868802 C =10293.609940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.752 5.752 10 C 0.148 3.852 11 C 0.107 3.893 12 N -0.715 5.715 13 C 0.555 3.445 14 O -0.522 6.522 15 C -0.087 4.087 16 C -0.094 4.094 17 C 0.081 3.919 18 F -0.131 7.131 19 C -0.083 4.083 20 C -0.115 4.115 21 C -0.214 4.214 22 C 0.021 3.979 23 O -0.166 6.166 24 C 0.096 3.904 25 H 0.261 0.739 26 H 0.364 0.636 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.401 0.599 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.164 0.836 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.739 -16.217 0.001 30.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.016 4.016 12 N -0.367 5.367 13 C 0.340 3.660 14 O -0.399 6.399 15 C -0.090 4.090 16 C -0.113 4.113 17 C 0.061 3.939 18 F -0.109 7.109 19 C -0.102 4.102 20 C -0.116 4.116 21 C -0.233 4.233 22 C -0.044 4.044 23 O -0.065 6.065 24 C 0.046 3.954 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.236 0.764 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.182 0.818 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 25.796 -15.257 0.001 29.970 hybrid contribution 0.285 0.370 0.010 0.467 sum 26.081 -14.887 0.011 30.031 Atomic orbital electron populations 1.69697 1.05122 1.26026 1.57030 1.24674 0.95266 0.97338 1.01610 0.86542 0.79292 0.84754 0.77946 1.20896 1.21576 1.20150 1.19006 0.80176 0.94894 1.43838 0.89056 1.42522 1.04167 1.01807 1.91370 1.20741 0.87473 0.90370 0.99424 1.21668 0.92477 0.84658 1.02805 1.45790 1.05655 1.10604 1.74657 1.17867 0.82346 0.88162 0.77603 1.90854 1.68037 1.32052 1.48911 1.18702 0.88504 0.93945 1.07883 1.21140 1.01096 0.89449 0.99624 1.17112 0.89434 0.81530 1.05808 1.91550 1.79404 1.45840 1.94148 1.20557 0.91775 0.98311 0.99573 1.19651 0.93864 0.92515 1.05541 1.22474 0.94472 0.95609 1.10776 1.24233 0.86475 0.94010 0.99730 1.84226 1.13867 1.34151 1.74289 1.19299 0.89705 0.86023 1.00326 0.92911 0.80348 0.94775 0.94828 0.90986 0.90978 0.76398 0.82787 0.83601 0.81823 0.77034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.75 -17.75 5.41 -59.90 -0.32 -18.07 16 10 C 0.15 2.70 6.37 -4.04 -0.03 2.68 16 11 C 0.11 1.71 5.79 -4.04 -0.02 1.68 16 12 N -0.71 -9.32 5.51 -61.34 -0.34 -9.66 16 13 C 0.55 8.04 7.77 -12.45 -0.10 7.95 16 14 O -0.52 -9.56 16.11 -5.42 -0.09 -9.65 16 15 C -0.09 -1.03 5.88 -104.90 -0.62 -1.64 16 16 C -0.09 -0.87 9.50 -39.06 -0.37 -1.24 16 17 C 0.08 0.72 7.28 -39.51 -0.29 0.43 16 18 F -0.13 -1.21 17.26 2.25 0.04 -1.17 16 19 C -0.08 -0.68 10.06 -39.18 -0.39 -1.07 16 20 C -0.11 -1.08 6.39 -105.18 -0.67 -1.75 16 21 C -0.21 -1.50 11.15 -37.60 -0.42 -1.92 16 22 C 0.02 0.16 11.96 29.23 0.35 0.50 16 23 O -0.17 -2.02 9.92 -6.29 -0.06 -2.08 16 24 C 0.10 1.16 6.99 -38.02 -0.27 0.89 16 25 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 26 H 0.36 8.44 5.53 -40.82 -0.23 8.21 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 3.99 6.49 -40.82 -0.26 3.72 16 32 H 0.15 1.07 6.37 -52.49 -0.33 0.73 16 33 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.21 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -35.52 313.24 -6.44 -41.96 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.38 Total: 5.45 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.08 Total: -0.56 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.11 Total: -56.10 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.15 Total: -11.73 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.52 -6.44 -41.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130602269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.973 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds