Wall clock time and date at job start Tue Mar 31 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00149 * 2 1 4 4 H 1.48504 * 109.47119 * 270.00022 * 3 2 1 5 5 H 1.48500 * 109.47024 * 29.99806 * 3 2 1 6 6 H 1.48494 * 109.47393 * 149.99848 * 3 2 1 7 7 C 1.38812 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00104 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99835 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99934 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47232 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00041 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.47580 * 120.00234 * 180.02562 * 13 12 11 16 16 C 1.39403 * 120.16655 * 359.96895 * 15 13 12 17 17 C 1.38475 * 120.48617 * 180.02562 * 16 15 13 18 18 F 1.35095 * 119.78498 * 180.27992 * 17 16 15 19 19 C 1.38185 * 120.42112 * 0.02562 * 17 16 15 20 20 C 1.39362 * 119.91752 * 359.97438 * 19 17 16 21 21 C 1.46852 * 134.26466 * 180.02562 * 20 19 17 22 22 C 1.33967 * 106.15188 * 180.02562 * 21 20 19 23 23 O 1.34460 * 110.12836 * 359.97438 * 22 21 20 24 24 C 1.34618 * 110.92047 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00473 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00136 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.47452 * 60.00118 * 10 9 7 28 28 H 1.09005 * 109.47336 * 300.00363 * 10 9 7 29 29 H 1.09000 * 109.46777 * 60.00199 * 11 10 9 30 30 H 1.08998 * 109.46745 * 300.00044 * 11 10 9 31 31 H 0.97002 * 120.00212 * 0.02562 * 12 11 10 32 32 H 1.07996 * 119.75624 * 0.04912 * 16 15 13 33 33 H 1.08001 * 120.03581 * 180.02562 * 19 17 16 34 34 H 1.07999 * 126.91924 * 0.02562 * 21 20 19 35 35 H 1.08004 * 124.93455 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1914 -0.0004 12 7 6.3488 -3.4601 0.0001 13 6 7.6965 -3.4601 -0.0005 14 8 8.3045 -2.4072 -0.0020 15 6 8.4344 -4.7382 -0.0006 16 6 7.7409 -5.9475 0.0007 17 6 8.4266 -7.1506 0.0012 18 9 7.7403 -8.3142 -0.0033 19 6 9.8084 -7.1684 0.0010 20 6 10.5190 -5.9696 -0.0003 21 6 11.9463 -5.6241 -0.0013 22 6 12.0058 -4.2857 -0.0017 23 8 10.7651 -3.7674 -0.0016 24 6 9.8368 -4.7424 -0.0006 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3622 -0.0004 27 1 3.8484 -3.0435 -0.8881 28 1 3.8490 -3.0416 0.8919 29 1 5.8803 -1.6187 0.8887 30 1 5.8789 -1.6210 -0.8913 31 1 5.8638 -4.3002 0.0009 32 1 6.6610 -5.9461 0.0009 33 1 10.3368 -8.1103 0.0009 34 1 12.7799 -6.3107 -0.0017 35 1 12.9178 -3.7072 -0.0029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130602269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:43 Heat of formation + Delta-G solvation = -53.114323 kcal Electronic energy + Delta-G solvation = -21808.790331 eV Core-core repulsion = 18108.611850 eV Total energy + Delta-G solvation = -3700.178481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97800 -43.60749 -40.96689 -38.53040 -37.49378 -35.64852 -34.11563 -33.41158 -31.56449 -30.56108 -29.64510 -26.09379 -24.86096 -23.62721 -23.27932 -22.76822 -21.55416 -19.94386 -19.20122 -18.87215 -18.23781 -17.42006 -17.39210 -16.90281 -16.67016 -16.53275 -16.37010 -16.06518 -15.65051 -15.33415 -15.27003 -14.73637 -14.42791 -14.16966 -13.91789 -13.63851 -13.44594 -13.28457 -12.92829 -12.72238 -12.67823 -12.58382 -12.09148 -11.83397 -11.38048 -11.25042 -11.04395 -10.30527 -9.68347 -9.42354 -9.37141 -8.05561 -5.41105 -0.74946 -0.05677 1.11690 1.39306 1.40939 1.48107 1.71855 1.72559 1.84494 2.43467 2.46597 2.88536 3.20237 3.26342 3.43623 3.70699 3.72984 3.86805 3.95626 4.01308 4.16940 4.28174 4.32188 4.52407 4.62057 4.65207 4.80121 4.92316 4.97480 5.07171 5.22564 5.35229 5.43792 5.72096 6.02524 6.17223 6.33771 6.99221 7.03443 7.77028 7.94623 9.15220 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.003046 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.188575 B = 9189.868802 C =10293.609940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.254 1.254 7 C -0.238 4.238 8 H 0.065 0.935 9 N -0.759 5.759 10 C 0.149 3.851 11 C 0.122 3.878 12 N -0.703 5.703 13 C 0.556 3.444 14 O -0.568 6.568 15 C -0.111 4.111 16 C -0.083 4.083 17 C 0.072 3.928 18 F -0.131 7.131 19 C -0.066 4.066 20 C -0.123 4.123 21 C -0.206 4.206 22 C 0.010 3.990 23 O -0.201 6.201 24 C 0.067 3.933 25 H 0.259 0.741 26 H 0.367 0.633 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.416 0.584 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.199 0.801 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.427 -17.628 0.019 33.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.178 1.178 7 C -0.368 4.368 8 H 0.083 0.917 9 N -0.405 5.405 10 C 0.023 3.977 11 C -0.002 4.002 12 N -0.356 5.356 13 C 0.343 3.657 14 O -0.448 6.448 15 C -0.114 4.114 16 C -0.102 4.102 17 C 0.053 3.947 18 F -0.110 7.110 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.224 4.224 22 C -0.053 4.053 23 O -0.101 6.101 24 C 0.018 3.982 25 H 0.068 0.932 26 H 0.200 0.800 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.255 0.745 32 H 0.191 0.809 33 H 0.194 0.806 34 H 0.216 0.784 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 28.520 -16.738 0.020 33.069 hybrid contribution -0.490 0.625 0.001 0.794 sum 28.030 -16.113 0.021 32.331 Atomic orbital electron populations 1.69865 1.07034 1.26842 1.59272 1.25483 0.96111 1.01226 1.02345 0.85454 0.78655 0.79781 0.78198 1.20353 1.22039 1.17833 1.19012 0.82148 0.93826 1.41851 0.91749 1.42541 1.02794 1.03904 1.91286 1.20846 0.88429 0.88363 1.00094 1.21308 0.90976 0.85753 1.02185 1.45585 1.05420 1.10386 1.74225 1.18265 0.82337 0.88690 0.76358 1.90819 1.68901 1.33861 1.51180 1.18519 0.88714 0.93258 1.10953 1.21288 1.02013 0.88807 0.98103 1.17159 0.89884 0.81295 1.06368 1.91554 1.79494 1.45724 1.94226 1.20900 0.91543 0.99133 0.96950 1.19996 0.95086 0.91917 1.05468 1.22905 0.94089 0.95914 1.09489 1.25093 0.86001 0.94993 0.99243 1.84196 1.15511 1.35493 1.74942 1.19674 0.90064 0.87240 1.01252 0.93167 0.80007 0.93763 0.93867 0.91757 0.91635 0.74522 0.80911 0.80573 0.78355 0.73408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.55 13.97 21.65 0.30 -62.24 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 3 Si 0.95 45.69 27.74 68.60 1.90 47.59 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 7 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 8 H 0.06 3.92 8.06 -2.91 -0.02 3.89 16 9 N -0.76 -35.09 5.41 -343.43 -1.86 -36.95 16 10 C 0.15 5.28 6.37 86.38 0.55 5.83 16 11 C 0.12 3.78 5.79 86.38 0.50 4.28 16 12 N -0.70 -17.74 5.51 -466.23 -2.57 -20.31 16 13 C 0.56 16.13 7.77 86.71 0.67 16.81 16 14 O -0.57 -21.28 16.11 6.23 0.10 -21.18 16 15 C -0.11 -2.58 5.88 -20.04 -0.12 -2.70 16 16 C -0.08 -1.41 9.50 22.61 0.21 -1.20 16 17 C 0.07 1.14 7.28 22.31 0.16 1.30 16 18 F -0.13 -2.12 17.26 44.97 0.78 -1.34 16 19 C -0.07 -0.90 10.06 22.53 0.23 -0.67 16 20 C -0.12 -2.08 6.39 -20.23 -0.13 -2.21 16 21 C -0.21 -2.30 11.15 23.55 0.26 -2.04 16 22 C 0.01 0.14 11.96 66.85 0.80 0.94 16 23 O -0.20 -4.87 9.92 3.12 0.03 -4.84 16 24 C 0.07 1.59 6.99 23.28 0.16 1.75 16 25 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 26 H 0.37 16.45 5.53 -92.71 -0.51 15.94 16 27 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.42 7.65 6.49 -92.71 -0.60 7.05 16 32 H 0.17 2.06 6.37 -2.91 -0.02 2.05 16 33 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.25 0.84 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -78.65 313.24 3.33 -75.32 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -0.01 Total: 17.47 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 4.65 Total: 6.49 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -4.12 Total: -119.50 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.13 Total: -26.02 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -78.65 3.33 -75.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130602269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.203 kcal (2) G-P(sol) polarization free energy of solvation -78.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds